Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02699

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02698 and CCNA_02699 are separated by 114 nucleotidesCCNA_02699 and CCNA_02700 overlap by 14 nucleotides CCNA_02698: CCNA_02698 - Inosine-uridine nucleoside N-ribohydrolase, at 2,851,489 to 2,852,460 _02698 CCNA_02699: CCNA_02699 - guanine deaminase, at 2,852,575 to 2,853,861 _02699 CCNA_02700: CCNA_02700 - xanthine dehydrogenase accessory protein XdhC, at 2,853,848 to 2,854,864 _02700 Position (kb) 2852 2853 2854Strain fitness (log2 ratio) -2 -1 0 1at 2851.578 kb on + strandat 2851.600 kb on + strand, within CCNA_02698at 2851.644 kb on + strand, within CCNA_02698at 2851.678 kb on + strand, within CCNA_02698at 2851.678 kb on + strand, within CCNA_02698at 2851.678 kb on + strand, within CCNA_02698at 2851.719 kb on + strand, within CCNA_02698at 2851.738 kb on - strand, within CCNA_02698at 2851.758 kb on - strand, within CCNA_02698at 2851.758 kb on - strand, within CCNA_02698at 2851.760 kb on + strand, within CCNA_02698at 2851.763 kb on - strand, within CCNA_02698at 2851.774 kb on + strand, within CCNA_02698at 2851.823 kb on - strand, within CCNA_02698at 2851.845 kb on + strand, within CCNA_02698at 2851.850 kb on + strand, within CCNA_02698at 2851.857 kb on + strand, within CCNA_02698at 2851.868 kb on - strand, within CCNA_02698at 2851.873 kb on + strand, within CCNA_02698at 2851.873 kb on + strand, within CCNA_02698at 2851.877 kb on + strand, within CCNA_02698at 2851.881 kb on - strand, within CCNA_02698at 2851.896 kb on - strand, within CCNA_02698at 2851.904 kb on - strand, within CCNA_02698at 2851.926 kb on + strand, within CCNA_02698at 2851.926 kb on + strand, within CCNA_02698at 2851.934 kb on - strand, within CCNA_02698at 2851.934 kb on - strand, within CCNA_02698at 2851.983 kb on + strand, within CCNA_02698at 2851.985 kb on - strand, within CCNA_02698at 2852.016 kb on - strand, within CCNA_02698at 2852.027 kb on + strand, within CCNA_02698at 2852.037 kb on + strand, within CCNA_02698at 2852.037 kb on + strand, within CCNA_02698at 2852.037 kb on + strand, within CCNA_02698at 2852.045 kb on - strand, within CCNA_02698at 2852.051 kb on + strand, within CCNA_02698at 2852.059 kb on - strand, within CCNA_02698at 2852.072 kb on + strand, within CCNA_02698at 2852.166 kb on + strand, within CCNA_02698at 2852.166 kb on + strand, within CCNA_02698at 2852.192 kb on - strand, within CCNA_02698at 2852.211 kb on + strand, within CCNA_02698at 2852.320 kb on - strand, within CCNA_02698at 2852.324 kb on - strand, within CCNA_02698at 2852.342 kb on - strand, within CCNA_02698at 2852.342 kb on - strand, within CCNA_02698at 2852.439 kb on - strandat 2852.500 kb on + strandat 2852.500 kb on + strandat 2852.500 kb on + strandat 2852.505 kb on + strandat 2852.511 kb on + strandat 2852.549 kb on - strandat 2853.055 kb on - strand, within CCNA_02699at 2853.119 kb on - strand, within CCNA_02699at 2853.121 kb on + strand, within CCNA_02699at 2853.853 kb on + strandat 2853.889 kb on - strandat 2853.980 kb on + strand, within CCNA_02700at 2853.980 kb on + strand, within CCNA_02700at 2853.980 kb on + strand, within CCNA_02700at 2853.980 kb on + strand, within CCNA_02700at 2853.980 kb on + strand, within CCNA_02700at 2853.988 kb on - strand, within CCNA_02700at 2853.988 kb on - strand, within CCNA_02700at 2853.988 kb on - strand, within CCNA_02700at 2853.988 kb on - strand, within CCNA_02700at 2854.052 kb on - strand, within CCNA_02700at 2854.108 kb on + strand, within CCNA_02700at 2854.114 kb on - strand, within CCNA_02700at 2854.114 kb on - strand, within CCNA_02700at 2854.136 kb on + strand, within CCNA_02700at 2854.137 kb on + strand, within CCNA_02700at 2854.141 kb on + strand, within CCNA_02700at 2854.144 kb on - strand, within CCNA_02700at 2854.144 kb on - strand, within CCNA_02700at 2854.147 kb on + strand, within CCNA_02700at 2854.147 kb on + strand, within CCNA_02700at 2854.147 kb on + strand, within CCNA_02700at 2854.147 kb on + strand, within CCNA_02700at 2854.149 kb on + strand, within CCNA_02700at 2854.155 kb on - strand, within CCNA_02700at 2854.155 kb on - strand, within CCNA_02700at 2854.177 kb on - strand, within CCNA_02700at 2854.293 kb on + strand, within CCNA_02700at 2854.368 kb on - strand, within CCNA_02700at 2854.420 kb on + strand, within CCNA_02700at 2854.466 kb on + strand, within CCNA_02700at 2854.474 kb on + strand, within CCNA_02700at 2854.575 kb on + strand, within CCNA_02700at 2854.596 kb on + strand, within CCNA_02700at 2854.807 kb on - strandat 2854.807 kb on - strandat 2854.832 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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2,851,578 + -0.8
2,851,600 + CCNA_02698 0.11 +0.8
2,851,644 + CCNA_02698 0.16 +0.3
2,851,678 + CCNA_02698 0.19 -0.2
2,851,678 + CCNA_02698 0.19 +0.7
2,851,678 + CCNA_02698 0.19 -0.0
2,851,719 + CCNA_02698 0.24 -0.9
2,851,738 - CCNA_02698 0.26 +0.1
2,851,758 - CCNA_02698 0.28 -1.5
2,851,758 - CCNA_02698 0.28 -1.7
2,851,760 + CCNA_02698 0.28 +1.1
2,851,763 - CCNA_02698 0.28 +0.3
2,851,774 + CCNA_02698 0.29 +0.6
2,851,823 - CCNA_02698 0.34 +0.1
2,851,845 + CCNA_02698 0.37 +0.3
2,851,850 + CCNA_02698 0.37 +0.3
2,851,857 + CCNA_02698 0.38 +0.8
2,851,868 - CCNA_02698 0.39 +0.8
2,851,873 + CCNA_02698 0.40 +0.3
2,851,873 + CCNA_02698 0.40 +0.3
2,851,877 + CCNA_02698 0.40 +0.8
2,851,881 - CCNA_02698 0.40 -0.4
2,851,896 - CCNA_02698 0.42 +0.3
2,851,904 - CCNA_02698 0.43 -1.7
2,851,926 + CCNA_02698 0.45 +1.2
2,851,926 + CCNA_02698 0.45 +0.8
2,851,934 - CCNA_02698 0.46 -0.4
2,851,934 - CCNA_02698 0.46 -2.2
2,851,983 + CCNA_02698 0.51 -1.0
2,851,985 - CCNA_02698 0.51 +0.5
2,852,016 - CCNA_02698 0.54 -0.3
2,852,027 + CCNA_02698 0.55 +0.2
2,852,037 + CCNA_02698 0.56 +0.3
2,852,037 + CCNA_02698 0.56 +0.1
2,852,037 + CCNA_02698 0.56 +0.4
2,852,045 - CCNA_02698 0.57 +0.8
2,852,051 + CCNA_02698 0.58 -0.6
2,852,059 - CCNA_02698 0.59 +0.6
2,852,072 + CCNA_02698 0.60 -0.3
2,852,166 + CCNA_02698 0.70 -0.0
2,852,166 + CCNA_02698 0.70 +0.7
2,852,192 - CCNA_02698 0.72 -0.8
2,852,211 + CCNA_02698 0.74 +0.3
2,852,320 - CCNA_02698 0.85 -0.5
2,852,324 - CCNA_02698 0.86 -1.3
2,852,342 - CCNA_02698 0.88 -0.2
2,852,342 - CCNA_02698 0.88 -1.2
2,852,439 - -0.6
2,852,500 + -0.1
2,852,500 + +0.2
2,852,500 + -0.0
2,852,505 + +0.5
2,852,511 + -0.6
2,852,549 - +0.2
2,853,055 - CCNA_02699 0.37 +0.5
2,853,119 - CCNA_02699 0.42 +0.4
2,853,121 + CCNA_02699 0.42 +0.9
2,853,853 + -0.4
2,853,889 - -0.7
2,853,980 + CCNA_02700 0.13 +0.1
2,853,980 + CCNA_02700 0.13 +0.3
2,853,980 + CCNA_02700 0.13 -0.1
2,853,980 + CCNA_02700 0.13 -0.5
2,853,980 + CCNA_02700 0.13 +0.2
2,853,988 - CCNA_02700 0.14 -0.1
2,853,988 - CCNA_02700 0.14 +0.3
2,853,988 - CCNA_02700 0.14 -0.0
2,853,988 - CCNA_02700 0.14 +1.3
2,854,052 - CCNA_02700 0.20 -0.3
2,854,108 + CCNA_02700 0.26 +1.4
2,854,114 - CCNA_02700 0.26 +0.4
2,854,114 - CCNA_02700 0.26 -0.1
2,854,136 + CCNA_02700 0.28 -0.6
2,854,137 + CCNA_02700 0.28 -1.6
2,854,141 + CCNA_02700 0.29 +0.4
2,854,144 - CCNA_02700 0.29 -0.4
2,854,144 - CCNA_02700 0.29 -0.5
2,854,147 + CCNA_02700 0.29 +0.0
2,854,147 + CCNA_02700 0.29 +0.3
2,854,147 + CCNA_02700 0.29 -0.8
2,854,147 + CCNA_02700 0.29 +0.9
2,854,149 + CCNA_02700 0.30 +0.4
2,854,155 - CCNA_02700 0.30 +0.3
2,854,155 - CCNA_02700 0.30 +0.6
2,854,177 - CCNA_02700 0.32 +0.7
2,854,293 + CCNA_02700 0.44 -0.1
2,854,368 - CCNA_02700 0.51 +0.4
2,854,420 + CCNA_02700 0.56 +0.2
2,854,466 + CCNA_02700 0.61 -1.5
2,854,474 + CCNA_02700 0.62 -0.6
2,854,575 + CCNA_02700 0.71 +0.3
2,854,596 + CCNA_02700 0.74 -0.9
2,854,807 - +0.5
2,854,807 - +0.3
2,854,832 + +0.5

Or see this region's nucleotide sequence