Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02664

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02662 and CCNA_02663 are separated by 128 nucleotidesCCNA_02663 and CCNA_02664 are separated by 211 nucleotidesCCNA_02664 and CCNA_02665 are separated by 230 nucleotides CCNA_02662: CCNA_02662 - M28-family zinc peptidase, at 2,815,723 to 2,817,327 _02662 CCNA_02663: CCNA_02663 - DnaK suppressor protein DksA, at 2,817,456 to 2,817,884 _02663 CCNA_02664: CCNA_02664 - flagellar assembly regulator FliX, at 2,818,096 to 2,818,530 _02664 CCNA_02665: CCNA_02665 - flagellar P-ring protein FlgI, at 2,818,761 to 2,819,873 _02665 Position (kb) 2818 2819Strain fitness (log2 ratio) -2 -1 0 1 2at 2817.097 kb on - strand, within CCNA_02662at 2817.097 kb on - strand, within CCNA_02662at 2817.142 kb on - strand, within CCNA_02662at 2817.154 kb on + strand, within CCNA_02662at 2817.162 kb on - strand, within CCNA_02662at 2817.206 kb on + strandat 2817.206 kb on + strandat 2817.214 kb on - strandat 2817.223 kb on + strandat 2817.241 kb on + strandat 2817.249 kb on - strandat 2817.265 kb on + strandat 2817.273 kb on - strandat 2817.387 kb on + strandat 2817.387 kb on + strandat 2817.405 kb on - strandat 2817.409 kb on - strandat 2817.409 kb on - strandat 2817.419 kb on - strandat 2817.437 kb on - strandat 2817.442 kb on + strandat 2817.449 kb on - strandat 2817.455 kb on - strandat 2817.551 kb on - strand, within CCNA_02663at 2817.659 kb on + strand, within CCNA_02663at 2817.665 kb on - strand, within CCNA_02663at 2817.676 kb on + strand, within CCNA_02663at 2817.889 kb on - strandat 2818.027 kb on + strandat 2818.045 kb on + strandat 2818.080 kb on - strandat 2818.084 kb on + strandat 2818.098 kb on + strandat 2818.101 kb on - strandat 2818.103 kb on + strandat 2818.332 kb on - strand, within CCNA_02664at 2818.332 kb on - strand, within CCNA_02664at 2818.332 kb on - strand, within CCNA_02664at 2818.560 kb on + strandat 2818.568 kb on - strandat 2818.568 kb on - strandat 2818.568 kb on - strandat 2818.584 kb on + strandat 2818.584 kb on + strandat 2818.692 kb on - strandat 2818.718 kb on + strandat 2818.721 kb on - strandat 2818.766 kb on - strandat 2818.783 kb on - strandat 2818.785 kb on + strandat 2818.785 kb on + strandat 2818.785 kb on + strandat 2818.785 kb on + strandat 2818.785 kb on + strandat 2818.793 kb on - strandat 2818.793 kb on - strandat 2818.793 kb on - strandat 2818.793 kb on - strandat 2818.838 kb on - strandat 2818.871 kb on - strandat 2818.895 kb on - strand, within CCNA_02665at 2818.908 kb on + strand, within CCNA_02665at 2818.940 kb on + strand, within CCNA_02665at 2818.940 kb on + strand, within CCNA_02665at 2818.967 kb on + strand, within CCNA_02665at 2818.991 kb on - strand, within CCNA_02665at 2818.993 kb on + strand, within CCNA_02665at 2818.993 kb on + strand, within CCNA_02665at 2818.993 kb on + strand, within CCNA_02665at 2819.008 kb on + strand, within CCNA_02665at 2819.023 kb on - strand, within CCNA_02665at 2819.074 kb on - strand, within CCNA_02665at 2819.106 kb on + strand, within CCNA_02665at 2819.106 kb on + strand, within CCNA_02665at 2819.106 kb on + strand, within CCNA_02665at 2819.149 kb on + strand, within CCNA_02665at 2819.160 kb on - strand, within CCNA_02665at 2819.180 kb on - strand, within CCNA_02665at 2819.180 kb on - strand, within CCNA_02665at 2819.180 kb on - strand, within CCNA_02665at 2819.190 kb on + strand, within CCNA_02665at 2819.249 kb on + strand, within CCNA_02665at 2819.249 kb on + strand, within CCNA_02665at 2819.249 kb on + strand, within CCNA_02665at 2819.257 kb on - strand, within CCNA_02665at 2819.257 kb on - strand, within CCNA_02665at 2819.257 kb on - strand, within CCNA_02665at 2819.311 kb on + strand, within CCNA_02665at 2819.311 kb on + strand, within CCNA_02665at 2819.318 kb on - strand, within CCNA_02665at 2819.341 kb on + strand, within CCNA_02665at 2819.346 kb on + strand, within CCNA_02665at 2819.346 kb on + strand, within CCNA_02665at 2819.349 kb on - strand, within CCNA_02665at 2819.354 kb on - strand, within CCNA_02665at 2819.356 kb on + strand, within CCNA_02665at 2819.371 kb on + strand, within CCNA_02665at 2819.425 kb on + strand, within CCNA_02665at 2819.432 kb on - strand, within CCNA_02665at 2819.467 kb on - strand, within CCNA_02665at 2819.525 kb on + strand, within CCNA_02665

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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2,817,097 - CCNA_02662 0.86 -0.2
2,817,097 - CCNA_02662 0.86 +0.5
2,817,142 - CCNA_02662 0.88 +0.5
2,817,154 + CCNA_02662 0.89 +0.1
2,817,162 - CCNA_02662 0.90 +0.5
2,817,206 + -0.4
2,817,206 + +0.1
2,817,214 - +0.4
2,817,223 + +0.8
2,817,241 + -0.8
2,817,249 - -0.7
2,817,265 + +0.2
2,817,273 - +0.5
2,817,387 + +0.5
2,817,387 + -0.2
2,817,405 - +0.3
2,817,409 - +0.5
2,817,409 - +0.5
2,817,419 - +0.4
2,817,437 - +1.1
2,817,442 + -1.4
2,817,449 - +0.5
2,817,455 - +0.2
2,817,551 - CCNA_02663 0.22 +1.0
2,817,659 + CCNA_02663 0.47 +0.0
2,817,665 - CCNA_02663 0.49 -0.4
2,817,676 + CCNA_02663 0.51 +0.5
2,817,889 - +2.5
2,818,027 + +0.5
2,818,045 + -0.7
2,818,080 - +0.4
2,818,084 + -0.7
2,818,098 + +0.6
2,818,101 - +0.4
2,818,103 + -1.3
2,818,332 - CCNA_02664 0.54 -0.9
2,818,332 - CCNA_02664 0.54 -0.9
2,818,332 - CCNA_02664 0.54 +0.9
2,818,560 + -0.6
2,818,568 - -1.6
2,818,568 - +0.5
2,818,568 - +0.2
2,818,584 + -0.2
2,818,584 + -2.2
2,818,692 - -0.2
2,818,718 + -0.7
2,818,721 - +0.8
2,818,766 - +0.3
2,818,783 - +0.2
2,818,785 + +0.1
2,818,785 + -0.1
2,818,785 + +0.1
2,818,785 + +0.2
2,818,785 + +0.1
2,818,793 - -0.5
2,818,793 - +0.4
2,818,793 - +0.0
2,818,793 - +0.6
2,818,838 - -0.5
2,818,871 - -1.7
2,818,895 - CCNA_02665 0.12 -0.8
2,818,908 + CCNA_02665 0.13 +0.4
2,818,940 + CCNA_02665 0.16 -0.1
2,818,940 + CCNA_02665 0.16 +0.9
2,818,967 + CCNA_02665 0.19 +0.1
2,818,991 - CCNA_02665 0.21 -0.8
2,818,993 + CCNA_02665 0.21 +0.1
2,818,993 + CCNA_02665 0.21 +0.8
2,818,993 + CCNA_02665 0.21 +0.4
2,819,008 + CCNA_02665 0.22 +0.3
2,819,023 - CCNA_02665 0.24 +0.1
2,819,074 - CCNA_02665 0.28 +0.2
2,819,106 + CCNA_02665 0.31 +0.5
2,819,106 + CCNA_02665 0.31 +1.2
2,819,106 + CCNA_02665 0.31 +1.5
2,819,149 + CCNA_02665 0.35 +0.3
2,819,160 - CCNA_02665 0.36 -1.6
2,819,180 - CCNA_02665 0.38 +0.6
2,819,180 - CCNA_02665 0.38 -0.5
2,819,180 - CCNA_02665 0.38 -0.8
2,819,190 + CCNA_02665 0.39 -0.0
2,819,249 + CCNA_02665 0.44 +0.0
2,819,249 + CCNA_02665 0.44 +1.1
2,819,249 + CCNA_02665 0.44 +0.9
2,819,257 - CCNA_02665 0.45 -0.4
2,819,257 - CCNA_02665 0.45 +0.8
2,819,257 - CCNA_02665 0.45 +0.9
2,819,311 + CCNA_02665 0.49 +0.7
2,819,311 + CCNA_02665 0.49 +1.8
2,819,318 - CCNA_02665 0.50 -0.3
2,819,341 + CCNA_02665 0.52 -0.4
2,819,346 + CCNA_02665 0.53 +1.6
2,819,346 + CCNA_02665 0.53 +0.2
2,819,349 - CCNA_02665 0.53 +0.9
2,819,354 - CCNA_02665 0.53 -0.6
2,819,356 + CCNA_02665 0.53 +0.7
2,819,371 + CCNA_02665 0.55 +0.1
2,819,425 + CCNA_02665 0.60 +0.0
2,819,432 - CCNA_02665 0.60 -0.8
2,819,467 - CCNA_02665 0.63 -0.2
2,819,525 + CCNA_02665 0.69 +0.4

Or see this region's nucleotide sequence