Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02662 and CCNA_02663 are separated by 128 nucleotides CCNA_02663 and CCNA_02664 are separated by 211 nucleotides CCNA_02664 and CCNA_02665 are separated by 230 nucleotides
CCNA_02662: CCNA_02662 - M28-family zinc peptidase, at 2,815,723 to 2,817,327
_02662
CCNA_02663: CCNA_02663 - DnaK suppressor protein DksA, at 2,817,456 to 2,817,884
_02663
CCNA_02664: CCNA_02664 - flagellar assembly regulator FliX, at 2,818,096 to 2,818,530
_02664
CCNA_02665: CCNA_02665 - flagellar P-ring protein FlgI, at 2,818,761 to 2,819,873
_02665
Position (kb)
2818
2819 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2817.097 kb on - strand, within CCNA_02662 at 2817.097 kb on - strand, within CCNA_02662 at 2817.142 kb on - strand, within CCNA_02662 at 2817.154 kb on + strand, within CCNA_02662 at 2817.162 kb on - strand, within CCNA_02662 at 2817.206 kb on + strand at 2817.206 kb on + strand at 2817.214 kb on - strand at 2817.223 kb on + strand at 2817.241 kb on + strand at 2817.249 kb on - strand at 2817.265 kb on + strand at 2817.273 kb on - strand at 2817.387 kb on + strand at 2817.387 kb on + strand at 2817.405 kb on - strand at 2817.409 kb on - strand at 2817.409 kb on - strand at 2817.419 kb on - strand at 2817.437 kb on - strand at 2817.442 kb on + strand at 2817.449 kb on - strand at 2817.455 kb on - strand at 2817.551 kb on - strand, within CCNA_02663 at 2817.659 kb on + strand, within CCNA_02663 at 2817.665 kb on - strand, within CCNA_02663 at 2817.676 kb on + strand, within CCNA_02663 at 2817.889 kb on - strand at 2818.027 kb on + strand at 2818.045 kb on + strand at 2818.080 kb on - strand at 2818.084 kb on + strand at 2818.098 kb on + strand at 2818.101 kb on - strand at 2818.103 kb on + strand at 2818.332 kb on - strand, within CCNA_02664 at 2818.332 kb on - strand, within CCNA_02664 at 2818.332 kb on - strand, within CCNA_02664 at 2818.560 kb on + strand at 2818.568 kb on - strand at 2818.568 kb on - strand at 2818.568 kb on - strand at 2818.584 kb on + strand at 2818.584 kb on + strand at 2818.692 kb on - strand at 2818.718 kb on + strand at 2818.721 kb on - strand at 2818.766 kb on - strand at 2818.783 kb on - strand at 2818.785 kb on + strand at 2818.785 kb on + strand at 2818.785 kb on + strand at 2818.785 kb on + strand at 2818.785 kb on + strand at 2818.793 kb on - strand at 2818.793 kb on - strand at 2818.793 kb on - strand at 2818.793 kb on - strand at 2818.838 kb on - strand at 2818.871 kb on - strand at 2818.895 kb on - strand, within CCNA_02665 at 2818.908 kb on + strand, within CCNA_02665 at 2818.940 kb on + strand, within CCNA_02665 at 2818.940 kb on + strand, within CCNA_02665 at 2818.967 kb on + strand, within CCNA_02665 at 2818.991 kb on - strand, within CCNA_02665 at 2818.993 kb on + strand, within CCNA_02665 at 2818.993 kb on + strand, within CCNA_02665 at 2818.993 kb on + strand, within CCNA_02665 at 2819.008 kb on + strand, within CCNA_02665 at 2819.023 kb on - strand, within CCNA_02665 at 2819.074 kb on - strand, within CCNA_02665 at 2819.106 kb on + strand, within CCNA_02665 at 2819.106 kb on + strand, within CCNA_02665 at 2819.106 kb on + strand, within CCNA_02665 at 2819.149 kb on + strand, within CCNA_02665 at 2819.160 kb on - strand, within CCNA_02665 at 2819.180 kb on - strand, within CCNA_02665 at 2819.180 kb on - strand, within CCNA_02665 at 2819.180 kb on - strand, within CCNA_02665 at 2819.190 kb on + strand, within CCNA_02665 at 2819.249 kb on + strand, within CCNA_02665 at 2819.249 kb on + strand, within CCNA_02665 at 2819.249 kb on + strand, within CCNA_02665 at 2819.257 kb on - strand, within CCNA_02665 at 2819.257 kb on - strand, within CCNA_02665 at 2819.257 kb on - strand, within CCNA_02665 at 2819.311 kb on + strand, within CCNA_02665 at 2819.311 kb on + strand, within CCNA_02665 at 2819.318 kb on - strand, within CCNA_02665 at 2819.341 kb on + strand, within CCNA_02665 at 2819.346 kb on + strand, within CCNA_02665 at 2819.346 kb on + strand, within CCNA_02665 at 2819.349 kb on - strand, within CCNA_02665 at 2819.354 kb on - strand, within CCNA_02665 at 2819.356 kb on + strand, within CCNA_02665 at 2819.371 kb on + strand, within CCNA_02665 at 2819.425 kb on + strand, within CCNA_02665 at 2819.432 kb on - strand, within CCNA_02665 at 2819.467 kb on - strand, within CCNA_02665 at 2819.525 kb on + strand, within CCNA_02665
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 2,817,097 - CCNA_02662 0.86 -0.2 2,817,097 - CCNA_02662 0.86 +0.5 2,817,142 - CCNA_02662 0.88 +0.5 2,817,154 + CCNA_02662 0.89 +0.1 2,817,162 - CCNA_02662 0.90 +0.5 2,817,206 + -0.4 2,817,206 + +0.1 2,817,214 - +0.4 2,817,223 + +0.8 2,817,241 + -0.8 2,817,249 - -0.7 2,817,265 + +0.2 2,817,273 - +0.5 2,817,387 + +0.5 2,817,387 + -0.2 2,817,405 - +0.3 2,817,409 - +0.5 2,817,409 - +0.5 2,817,419 - +0.4 2,817,437 - +1.1 2,817,442 + -1.4 2,817,449 - +0.5 2,817,455 - +0.2 2,817,551 - CCNA_02663 0.22 +1.0 2,817,659 + CCNA_02663 0.47 +0.0 2,817,665 - CCNA_02663 0.49 -0.4 2,817,676 + CCNA_02663 0.51 +0.5 2,817,889 - +2.5 2,818,027 + +0.5 2,818,045 + -0.7 2,818,080 - +0.4 2,818,084 + -0.7 2,818,098 + +0.6 2,818,101 - +0.4 2,818,103 + -1.3 2,818,332 - CCNA_02664 0.54 -0.9 2,818,332 - CCNA_02664 0.54 -0.9 2,818,332 - CCNA_02664 0.54 +0.9 2,818,560 + -0.6 2,818,568 - -1.6 2,818,568 - +0.5 2,818,568 - +0.2 2,818,584 + -0.2 2,818,584 + -2.2 2,818,692 - -0.2 2,818,718 + -0.7 2,818,721 - +0.8 2,818,766 - +0.3 2,818,783 - +0.2 2,818,785 + +0.1 2,818,785 + -0.1 2,818,785 + +0.1 2,818,785 + +0.2 2,818,785 + +0.1 2,818,793 - -0.5 2,818,793 - +0.4 2,818,793 - +0.0 2,818,793 - +0.6 2,818,838 - -0.5 2,818,871 - -1.7 2,818,895 - CCNA_02665 0.12 -0.8 2,818,908 + CCNA_02665 0.13 +0.4 2,818,940 + CCNA_02665 0.16 -0.1 2,818,940 + CCNA_02665 0.16 +0.9 2,818,967 + CCNA_02665 0.19 +0.1 2,818,991 - CCNA_02665 0.21 -0.8 2,818,993 + CCNA_02665 0.21 +0.1 2,818,993 + CCNA_02665 0.21 +0.8 2,818,993 + CCNA_02665 0.21 +0.4 2,819,008 + CCNA_02665 0.22 +0.3 2,819,023 - CCNA_02665 0.24 +0.1 2,819,074 - CCNA_02665 0.28 +0.2 2,819,106 + CCNA_02665 0.31 +0.5 2,819,106 + CCNA_02665 0.31 +1.2 2,819,106 + CCNA_02665 0.31 +1.5 2,819,149 + CCNA_02665 0.35 +0.3 2,819,160 - CCNA_02665 0.36 -1.6 2,819,180 - CCNA_02665 0.38 +0.6 2,819,180 - CCNA_02665 0.38 -0.5 2,819,180 - CCNA_02665 0.38 -0.8 2,819,190 + CCNA_02665 0.39 -0.0 2,819,249 + CCNA_02665 0.44 +0.0 2,819,249 + CCNA_02665 0.44 +1.1 2,819,249 + CCNA_02665 0.44 +0.9 2,819,257 - CCNA_02665 0.45 -0.4 2,819,257 - CCNA_02665 0.45 +0.8 2,819,257 - CCNA_02665 0.45 +0.9 2,819,311 + CCNA_02665 0.49 +0.7 2,819,311 + CCNA_02665 0.49 +1.8 2,819,318 - CCNA_02665 0.50 -0.3 2,819,341 + CCNA_02665 0.52 -0.4 2,819,346 + CCNA_02665 0.53 +1.6 2,819,346 + CCNA_02665 0.53 +0.2 2,819,349 - CCNA_02665 0.53 +0.9 2,819,354 - CCNA_02665 0.53 -0.6 2,819,356 + CCNA_02665 0.53 +0.7 2,819,371 + CCNA_02665 0.55 +0.1 2,819,425 + CCNA_02665 0.60 +0.0 2,819,432 - CCNA_02665 0.60 -0.8 2,819,467 - CCNA_02665 0.63 -0.2 2,819,525 + CCNA_02665 0.69 +0.4
Or see this region's nucleotide sequence