Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02653 and CCNA_02654 are separated by 131 nucleotides CCNA_02654 and CCNA_02655 are separated by 190 nucleotides CCNA_02655 and CCNA_02656 are separated by 67 nucleotides CCNA_02656 and CCNA_02657 are separated by 12 nucleotides
CCNA_02653: CCNA_02653 - hypothetical protein, at 2,807,177 to 2,808,076
_02653
CCNA_02654: CCNA_02654 - hypothetical protein, at 2,808,208 to 2,808,585
_02654
CCNA_02655: CCNA_02655 - NTF2 superfamily protein, at 2,808,776 to 2,809,300
_02655
CCNA_02656: CCNA_02656 - AraC-family transcriptional regulator, at 2,809,368 to 2,810,180
_02656
CCNA_02657: CCNA_02657 - hypothetical protein, at 2,810,193 to 2,810,789
_02657
Position (kb)
2808
2809
2810 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2807.816 kb on + strand, within CCNA_02653 at 2807.816 kb on + strand, within CCNA_02653 at 2807.816 kb on + strand, within CCNA_02653 at 2807.816 kb on + strand, within CCNA_02653 at 2807.816 kb on - strand, within CCNA_02653 at 2807.817 kb on - strand, within CCNA_02653 at 2807.824 kb on - strand, within CCNA_02653 at 2807.824 kb on - strand, within CCNA_02653 at 2807.824 kb on - strand, within CCNA_02653 at 2807.824 kb on - strand, within CCNA_02653 at 2807.833 kb on + strand, within CCNA_02653 at 2807.833 kb on + strand, within CCNA_02653 at 2807.924 kb on + strand, within CCNA_02653 at 2807.924 kb on + strand, within CCNA_02653 at 2807.947 kb on + strand, within CCNA_02653 at 2807.956 kb on - strand, within CCNA_02653 at 2807.960 kb on + strand, within CCNA_02653 at 2807.968 kb on - strand, within CCNA_02653 at 2807.968 kb on - strand, within CCNA_02653 at 2807.972 kb on + strand, within CCNA_02653 at 2807.972 kb on + strand, within CCNA_02653 at 2807.980 kb on - strand, within CCNA_02653 at 2807.981 kb on + strand, within CCNA_02653 at 2807.996 kb on + strand at 2808.033 kb on + strand at 2808.036 kb on - strand at 2808.046 kb on - strand at 2808.052 kb on + strand at 2808.052 kb on + strand at 2808.052 kb on + strand at 2808.060 kb on - strand at 2808.085 kb on + strand at 2808.090 kb on + strand at 2808.097 kb on + strand at 2808.155 kb on - strand at 2808.225 kb on - strand at 2808.257 kb on + strand, within CCNA_02654 at 2808.265 kb on - strand, within CCNA_02654 at 2808.268 kb on + strand, within CCNA_02654 at 2808.273 kb on + strand, within CCNA_02654 at 2808.273 kb on + strand, within CCNA_02654 at 2808.273 kb on + strand, within CCNA_02654 at 2808.273 kb on + strand, within CCNA_02654 at 2808.273 kb on + strand, within CCNA_02654 at 2808.273 kb on + strand, within CCNA_02654 at 2808.273 kb on + strand, within CCNA_02654 at 2808.273 kb on + strand, within CCNA_02654 at 2808.281 kb on - strand, within CCNA_02654 at 2808.281 kb on - strand, within CCNA_02654 at 2808.281 kb on - strand, within CCNA_02654 at 2808.281 kb on - strand, within CCNA_02654 at 2808.281 kb on - strand, within CCNA_02654 at 2808.281 kb on - strand, within CCNA_02654 at 2808.281 kb on - strand, within CCNA_02654 at 2808.281 kb on - strand, within CCNA_02654 at 2808.281 kb on - strand, within CCNA_02654 at 2808.326 kb on - strand, within CCNA_02654 at 2808.326 kb on - strand, within CCNA_02654 at 2808.368 kb on + strand, within CCNA_02654 at 2808.382 kb on - strand, within CCNA_02654 at 2808.390 kb on + strand, within CCNA_02654 at 2808.390 kb on + strand, within CCNA_02654 at 2808.408 kb on - strand, within CCNA_02654 at 2808.408 kb on - strand, within CCNA_02654 at 2808.418 kb on - strand, within CCNA_02654 at 2808.421 kb on + strand, within CCNA_02654 at 2808.463 kb on - strand, within CCNA_02654 at 2808.463 kb on - strand, within CCNA_02654 at 2808.504 kb on + strand, within CCNA_02654 at 2808.520 kb on + strand, within CCNA_02654 at 2808.550 kb on + strand at 2808.563 kb on + strand at 2808.566 kb on - strand at 2808.571 kb on - strand at 2808.576 kb on + strand at 2808.589 kb on - strand at 2808.607 kb on - strand at 2808.607 kb on - strand at 2808.636 kb on + strand at 2808.636 kb on + strand at 2808.636 kb on + strand at 2808.636 kb on + strand at 2808.636 kb on + strand at 2808.636 kb on + strand at 2808.636 kb on + strand at 2808.638 kb on - strand at 2808.644 kb on - strand at 2808.644 kb on - strand at 2808.644 kb on - strand at 2808.644 kb on - strand at 2808.644 kb on - strand at 2808.644 kb on - strand at 2808.649 kb on + strand at 2808.649 kb on + strand at 2808.649 kb on + strand at 2808.649 kb on + strand at 2808.657 kb on - strand at 2808.672 kb on + strand at 2808.672 kb on + strand at 2808.680 kb on - strand at 2808.680 kb on - strand at 2808.765 kb on + strand at 2808.768 kb on - strand at 2808.768 kb on - strand at 2808.791 kb on + strand at 2808.792 kb on - strand at 2808.801 kb on + strand at 2808.860 kb on + strand, within CCNA_02655 at 2808.864 kb on - strand, within CCNA_02655 at 2808.946 kb on + strand, within CCNA_02655 at 2808.946 kb on + strand, within CCNA_02655 at 2808.946 kb on + strand, within CCNA_02655 at 2808.954 kb on - strand, within CCNA_02655 at 2808.959 kb on - strand, within CCNA_02655 at 2808.975 kb on - strand, within CCNA_02655 at 2808.975 kb on - strand, within CCNA_02655 at 2808.994 kb on + strand, within CCNA_02655 at 2808.994 kb on + strand, within CCNA_02655 at 2808.994 kb on - strand, within CCNA_02655 at 2809.002 kb on - strand, within CCNA_02655 at 2809.024 kb on + strand, within CCNA_02655 at 2809.035 kb on + strand, within CCNA_02655 at 2809.035 kb on + strand, within CCNA_02655 at 2809.035 kb on + strand, within CCNA_02655 at 2809.043 kb on - strand, within CCNA_02655 at 2809.092 kb on + strand, within CCNA_02655 at 2809.098 kb on + strand, within CCNA_02655 at 2809.105 kb on + strand, within CCNA_02655 at 2809.107 kb on - strand, within CCNA_02655 at 2809.131 kb on + strand, within CCNA_02655 at 2809.157 kb on + strand, within CCNA_02655 at 2809.206 kb on - strand, within CCNA_02655 at 2809.241 kb on - strand, within CCNA_02655 at 2809.303 kb on - strand at 2809.308 kb on + strand at 2809.308 kb on + strand at 2809.316 kb on - strand at 2809.316 kb on - strand at 2809.396 kb on + strand at 2809.519 kb on + strand, within CCNA_02656 at 2809.522 kb on - strand, within CCNA_02656 at 2809.522 kb on - strand, within CCNA_02656 at 2809.566 kb on + strand, within CCNA_02656 at 2809.652 kb on + strand, within CCNA_02656 at 2809.712 kb on - strand, within CCNA_02656 at 2809.737 kb on - strand, within CCNA_02656 at 2809.801 kb on - strand, within CCNA_02656 at 2809.839 kb on + strand, within CCNA_02656 at 2809.842 kb on - strand, within CCNA_02656 at 2809.842 kb on - strand, within CCNA_02656 at 2809.842 kb on - strand, within CCNA_02656 at 2809.847 kb on - strand, within CCNA_02656 at 2809.847 kb on - strand, within CCNA_02656 at 2809.877 kb on - strand, within CCNA_02656 at 2809.902 kb on - strand, within CCNA_02656 at 2809.932 kb on + strand, within CCNA_02656 at 2809.956 kb on + strand, within CCNA_02656 at 2809.956 kb on + strand, within CCNA_02656 at 2809.956 kb on + strand, within CCNA_02656 at 2809.964 kb on - strand, within CCNA_02656 at 2809.965 kb on - strand, within CCNA_02656 at 2809.965 kb on - strand, within CCNA_02656 at 2810.096 kb on + strand, within CCNA_02656 at 2810.099 kb on - strand at 2810.152 kb on - strand at 2810.163 kb on + strand at 2810.163 kb on + strand at 2810.165 kb on + strand at 2810.188 kb on - strand at 2810.200 kb on + strand at 2810.208 kb on - strand at 2810.217 kb on + strand at 2810.252 kb on - strand at 2810.284 kb on + strand, within CCNA_02657
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 2,807,816 + CCNA_02653 0.71 -0.0 2,807,816 + CCNA_02653 0.71 -0.8 2,807,816 + CCNA_02653 0.71 -0.6 2,807,816 + CCNA_02653 0.71 -0.6 2,807,816 - CCNA_02653 0.71 -3.3 2,807,817 - CCNA_02653 0.71 +1.3 2,807,824 - CCNA_02653 0.72 -0.4 2,807,824 - CCNA_02653 0.72 +0.3 2,807,824 - CCNA_02653 0.72 -0.1 2,807,824 - CCNA_02653 0.72 +0.8 2,807,833 + CCNA_02653 0.73 -0.2 2,807,833 + CCNA_02653 0.73 +0.7 2,807,924 + CCNA_02653 0.83 -0.0 2,807,924 + CCNA_02653 0.83 +0.7 2,807,947 + CCNA_02653 0.86 -1.1 2,807,956 - CCNA_02653 0.87 -0.1 2,807,960 + CCNA_02653 0.87 -1.2 2,807,968 - CCNA_02653 0.88 +1.2 2,807,968 - CCNA_02653 0.88 -0.7 2,807,972 + CCNA_02653 0.88 -0.9 2,807,972 + CCNA_02653 0.88 -0.5 2,807,980 - CCNA_02653 0.89 -1.0 2,807,981 + CCNA_02653 0.89 +0.9 2,807,996 + -1.4 2,808,033 + -1.2 2,808,036 - -2.1 2,808,046 - -0.8 2,808,052 + -0.2 2,808,052 + -0.8 2,808,052 + +0.3 2,808,060 - -0.9 2,808,085 + +0.8 2,808,090 + -0.6 2,808,097 + -0.8 2,808,155 - +0.1 2,808,225 - -1.4 2,808,257 + CCNA_02654 0.13 -1.2 2,808,265 - CCNA_02654 0.15 +0.9 2,808,268 + CCNA_02654 0.16 +0.6 2,808,273 + CCNA_02654 0.17 -2.1 2,808,273 + CCNA_02654 0.17 -0.3 2,808,273 + CCNA_02654 0.17 +0.3 2,808,273 + CCNA_02654 0.17 -0.5 2,808,273 + CCNA_02654 0.17 -2.1 2,808,273 + CCNA_02654 0.17 -0.5 2,808,273 + CCNA_02654 0.17 -1.2 2,808,273 + CCNA_02654 0.17 -1.1 2,808,281 - CCNA_02654 0.19 -1.3 2,808,281 - CCNA_02654 0.19 +0.0 2,808,281 - CCNA_02654 0.19 -0.3 2,808,281 - CCNA_02654 0.19 -0.0 2,808,281 - CCNA_02654 0.19 +0.5 2,808,281 - CCNA_02654 0.19 -0.3 2,808,281 - CCNA_02654 0.19 -0.7 2,808,281 - CCNA_02654 0.19 +0.2 2,808,281 - CCNA_02654 0.19 +0.4 2,808,326 - CCNA_02654 0.31 -2.4 2,808,326 - CCNA_02654 0.31 +0.6 2,808,368 + CCNA_02654 0.42 -0.3 2,808,382 - CCNA_02654 0.46 -0.9 2,808,390 + CCNA_02654 0.48 -1.9 2,808,390 + CCNA_02654 0.48 -2.6 2,808,408 - CCNA_02654 0.53 -0.3 2,808,408 - CCNA_02654 0.53 +0.5 2,808,418 - CCNA_02654 0.56 -0.5 2,808,421 + CCNA_02654 0.56 -0.7 2,808,463 - CCNA_02654 0.67 +0.7 2,808,463 - CCNA_02654 0.67 -2.3 2,808,504 + CCNA_02654 0.78 -1.0 2,808,520 + CCNA_02654 0.83 -0.1 2,808,550 + +0.8 2,808,563 + -0.1 2,808,566 - -0.6 2,808,571 - -0.5 2,808,576 + +0.1 2,808,589 - +1.4 2,808,607 - -0.2 2,808,607 - +0.6 2,808,636 + -1.0 2,808,636 + -1.8 2,808,636 + -0.2 2,808,636 + -0.7 2,808,636 + -0.1 2,808,636 + -0.8 2,808,636 + -0.7 2,808,638 - -0.8 2,808,644 - -0.5 2,808,644 - +0.2 2,808,644 - +0.4 2,808,644 - +0.4 2,808,644 - +0.4 2,808,644 - -0.2 2,808,649 + -0.0 2,808,649 + -0.9 2,808,649 + +0.2 2,808,649 + +0.9 2,808,657 - -0.8 2,808,672 + -0.5 2,808,672 + -2.5 2,808,680 - -0.1 2,808,680 - -0.6 2,808,765 + -0.6 2,808,768 - +1.3 2,808,768 - -0.1 2,808,791 + +0.7 2,808,792 - +0.3 2,808,801 + -0.0 2,808,860 + CCNA_02655 0.16 -0.2 2,808,864 - CCNA_02655 0.17 -0.9 2,808,946 + CCNA_02655 0.32 -1.3 2,808,946 + CCNA_02655 0.32 -0.2 2,808,946 + CCNA_02655 0.32 -0.1 2,808,954 - CCNA_02655 0.34 -0.2 2,808,959 - CCNA_02655 0.35 -2.6 2,808,975 - CCNA_02655 0.38 -0.5 2,808,975 - CCNA_02655 0.38 -2.6 2,808,994 + CCNA_02655 0.42 -1.1 2,808,994 + CCNA_02655 0.42 -1.4 2,808,994 - CCNA_02655 0.42 -1.0 2,809,002 - CCNA_02655 0.43 -1.6 2,809,024 + CCNA_02655 0.47 +1.1 2,809,035 + CCNA_02655 0.49 -1.8 2,809,035 + CCNA_02655 0.49 -0.6 2,809,035 + CCNA_02655 0.49 -2.2 2,809,043 - CCNA_02655 0.51 -0.5 2,809,092 + CCNA_02655 0.60 -0.0 2,809,098 + CCNA_02655 0.61 -1.1 2,809,105 + CCNA_02655 0.63 -0.8 2,809,107 - CCNA_02655 0.63 -0.3 2,809,131 + CCNA_02655 0.68 -0.4 2,809,157 + CCNA_02655 0.73 -2.5 2,809,206 - CCNA_02655 0.82 -0.8 2,809,241 - CCNA_02655 0.89 -1.4 2,809,303 - +0.8 2,809,308 + +0.0 2,809,308 + +1.5 2,809,316 - -0.1 2,809,316 - +0.8 2,809,396 + +0.0 2,809,519 + CCNA_02656 0.19 +0.2 2,809,522 - CCNA_02656 0.19 -0.8 2,809,522 - CCNA_02656 0.19 +0.6 2,809,566 + CCNA_02656 0.24 -0.8 2,809,652 + CCNA_02656 0.35 -0.6 2,809,712 - CCNA_02656 0.42 -0.8 2,809,737 - CCNA_02656 0.45 -0.4 2,809,801 - CCNA_02656 0.53 -1.6 2,809,839 + CCNA_02656 0.58 +0.1 2,809,842 - CCNA_02656 0.58 -0.5 2,809,842 - CCNA_02656 0.58 +0.1 2,809,842 - CCNA_02656 0.58 +0.5 2,809,847 - CCNA_02656 0.59 +0.7 2,809,847 - CCNA_02656 0.59 +0.2 2,809,877 - CCNA_02656 0.63 +1.5 2,809,902 - CCNA_02656 0.66 -2.7 2,809,932 + CCNA_02656 0.69 -0.9 2,809,956 + CCNA_02656 0.72 +0.2 2,809,956 + CCNA_02656 0.72 -0.6 2,809,956 + CCNA_02656 0.72 +0.1 2,809,964 - CCNA_02656 0.73 -0.0 2,809,965 - CCNA_02656 0.73 -0.0 2,809,965 - CCNA_02656 0.73 +0.1 2,810,096 + CCNA_02656 0.90 +0.6 2,810,099 - +0.1 2,810,152 - -0.2 2,810,163 + +1.4 2,810,163 + -1.4 2,810,165 + +0.0 2,810,188 - -0.0 2,810,200 + -0.3 2,810,208 - +0.4 2,810,217 + -0.4 2,810,252 - +0.2 2,810,284 + CCNA_02657 0.15 -0.6
Or see this region's nucleotide sequence