Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02629 and CCNA_02630 overlap by 2 nucleotides CCNA_02630 and CCNA_02631 are separated by 69 nucleotides CCNA_02631 and CCNA_02632 are separated by 349 nucleotides
CCNA_02629: CCNA_02629 - UDP-N-acetylmuramate--alanine ligase, at 2,779,586 to 2,781,007
_02629
CCNA_02630: CCNA_02630 - hypothetical protein, at 2,781,006 to 2,781,527
_02630
CCNA_02631: CCNA_02631 - P-loop NTPase-related protein, at 2,781,597 to 2,781,770
_02631
CCNA_02632: CCNA_02632 - SOUL domain heme-binding protein, at 2,782,120 to 2,782,746
_02632
Position (kb)
2781
2782 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2781.024 kb on - strand at 2781.073 kb on + strand, within CCNA_02630 at 2781.080 kb on - strand, within CCNA_02630 at 2781.083 kb on + strand, within CCNA_02630 at 2781.083 kb on + strand, within CCNA_02630 at 2781.118 kb on + strand, within CCNA_02630 at 2781.118 kb on + strand, within CCNA_02630 at 2781.118 kb on + strand, within CCNA_02630 at 2781.118 kb on + strand, within CCNA_02630 at 2781.118 kb on + strand, within CCNA_02630 at 2781.126 kb on - strand, within CCNA_02630 at 2781.126 kb on - strand, within CCNA_02630 at 2781.126 kb on - strand, within CCNA_02630 at 2781.165 kb on + strand, within CCNA_02630 at 2781.173 kb on - strand, within CCNA_02630 at 2781.175 kb on + strand, within CCNA_02630 at 2781.177 kb on + strand, within CCNA_02630 at 2781.196 kb on + strand, within CCNA_02630 at 2781.252 kb on - strand, within CCNA_02630 at 2781.276 kb on - strand, within CCNA_02630 at 2781.279 kb on + strand, within CCNA_02630 at 2781.301 kb on + strand, within CCNA_02630 at 2781.356 kb on - strand, within CCNA_02630 at 2781.372 kb on - strand, within CCNA_02630 at 2781.379 kb on + strand, within CCNA_02630 at 2781.379 kb on + strand, within CCNA_02630 at 2781.433 kb on + strand, within CCNA_02630 at 2781.469 kb on + strand, within CCNA_02630 at 2781.486 kb on + strand at 2781.514 kb on + strand at 2781.521 kb on + strand at 2781.521 kb on + strand at 2781.529 kb on - strand at 2781.555 kb on + strand at 2781.593 kb on + strand at 2781.593 kb on + strand at 2781.602 kb on + strand at 2781.608 kb on - strand at 2781.628 kb on + strand, within CCNA_02631 at 2781.631 kb on - strand, within CCNA_02631 at 2781.710 kb on + strand, within CCNA_02631 at 2781.741 kb on - strand, within CCNA_02631 at 2781.768 kb on + strand at 2781.865 kb on - strand at 2781.865 kb on - strand at 2781.884 kb on - strand at 2781.904 kb on - strand at 2781.925 kb on - strand at 2781.935 kb on + strand at 2781.955 kb on + strand at 2781.955 kb on + strand at 2781.963 kb on - strand at 2781.969 kb on - strand at 2781.981 kb on + strand at 2781.986 kb on + strand at 2781.989 kb on + strand at 2781.996 kb on + strand at 2781.996 kb on + strand at 2781.996 kb on + strand at 2781.996 kb on + strand at 2781.996 kb on + strand at 2781.996 kb on + strand at 2781.996 kb on + strand at 2781.996 kb on + strand at 2781.996 kb on + strand at 2781.996 kb on + strand at 2781.996 kb on + strand at 2781.999 kb on - strand at 2782.004 kb on - strand at 2782.004 kb on - strand at 2782.004 kb on - strand at 2782.006 kb on + strand at 2782.014 kb on - strand at 2782.036 kb on + strand at 2782.040 kb on - strand at 2782.051 kb on + strand at 2782.060 kb on + strand at 2782.068 kb on - strand at 2782.068 kb on - strand at 2782.068 kb on - strand at 2782.070 kb on + strand at 2782.070 kb on + strand at 2782.073 kb on - strand at 2782.078 kb on - strand at 2782.083 kb on - strand at 2782.088 kb on - strand at 2782.088 kb on - strand at 2782.088 kb on - strand at 2782.122 kb on + strand at 2782.145 kb on - strand at 2782.164 kb on - strand at 2782.217 kb on - strand, within CCNA_02632 at 2782.220 kb on + strand, within CCNA_02632 at 2782.220 kb on + strand, within CCNA_02632 at 2782.235 kb on + strand, within CCNA_02632 at 2782.235 kb on + strand, within CCNA_02632 at 2782.235 kb on + strand, within CCNA_02632 at 2782.235 kb on + strand, within CCNA_02632 at 2782.235 kb on + strand, within CCNA_02632 at 2782.235 kb on + strand, within CCNA_02632 at 2782.243 kb on - strand, within CCNA_02632 at 2782.256 kb on - strand, within CCNA_02632 at 2782.261 kb on - strand, within CCNA_02632 at 2782.368 kb on - strand, within CCNA_02632 at 2782.368 kb on - strand, within CCNA_02632 at 2782.405 kb on + strand, within CCNA_02632 at 2782.405 kb on + strand, within CCNA_02632 at 2782.413 kb on - strand, within CCNA_02632 at 2782.435 kb on + strand, within CCNA_02632 at 2782.440 kb on + strand, within CCNA_02632 at 2782.461 kb on - strand, within CCNA_02632 at 2782.462 kb on + strand, within CCNA_02632 at 2782.462 kb on + strand, within CCNA_02632 at 2782.468 kb on - strand, within CCNA_02632 at 2782.470 kb on - strand, within CCNA_02632 at 2782.470 kb on - strand, within CCNA_02632 at 2782.493 kb on - strand, within CCNA_02632 at 2782.495 kb on + strand, within CCNA_02632 at 2782.505 kb on + strand, within CCNA_02632 at 2782.510 kb on - strand, within CCNA_02632 at 2782.515 kb on + strand, within CCNA_02632 at 2782.520 kb on + strand, within CCNA_02632 at 2782.520 kb on + strand, within CCNA_02632 at 2782.528 kb on - strand, within CCNA_02632 at 2782.528 kb on - strand, within CCNA_02632 at 2782.532 kb on + strand, within CCNA_02632 at 2782.574 kb on + strand, within CCNA_02632 at 2782.574 kb on + strand, within CCNA_02632 at 2782.574 kb on + strand, within CCNA_02632 at 2782.574 kb on + strand, within CCNA_02632 at 2782.579 kb on + strand, within CCNA_02632 at 2782.579 kb on + strand, within CCNA_02632 at 2782.582 kb on - strand, within CCNA_02632 at 2782.582 kb on - strand, within CCNA_02632 at 2782.582 kb on - strand, within CCNA_02632 at 2782.613 kb on - strand, within CCNA_02632 at 2782.613 kb on - strand, within CCNA_02632 at 2782.613 kb on - strand, within CCNA_02632 at 2782.645 kb on - strand, within CCNA_02632 at 2782.680 kb on + strand, within CCNA_02632 at 2782.680 kb on + strand, within CCNA_02632 at 2782.680 kb on + strand, within CCNA_02632 at 2782.680 kb on + strand, within CCNA_02632 at 2782.688 kb on - strand at 2782.688 kb on - strand at 2782.696 kb on + strand at 2782.697 kb on - strand at 2782.697 kb on - strand at 2782.754 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 2,781,024 - -0.3 2,781,073 + CCNA_02630 0.13 +0.2 2,781,080 - CCNA_02630 0.14 -0.9 2,781,083 + CCNA_02630 0.15 +0.4 2,781,083 + CCNA_02630 0.15 +0.2 2,781,118 + CCNA_02630 0.21 +0.4 2,781,118 + CCNA_02630 0.21 +0.4 2,781,118 + CCNA_02630 0.21 +1.8 2,781,118 + CCNA_02630 0.21 -0.0 2,781,118 + CCNA_02630 0.21 -0.2 2,781,126 - CCNA_02630 0.23 -1.4 2,781,126 - CCNA_02630 0.23 +2.1 2,781,126 - CCNA_02630 0.23 -1.3 2,781,165 + CCNA_02630 0.30 -0.4 2,781,173 - CCNA_02630 0.32 -1.9 2,781,175 + CCNA_02630 0.32 -1.1 2,781,177 + CCNA_02630 0.33 +0.5 2,781,196 + CCNA_02630 0.36 -0.2 2,781,252 - CCNA_02630 0.47 -1.2 2,781,276 - CCNA_02630 0.52 +0.0 2,781,279 + CCNA_02630 0.52 +1.0 2,781,301 + CCNA_02630 0.57 +0.4 2,781,356 - CCNA_02630 0.67 +0.8 2,781,372 - CCNA_02630 0.70 -0.9 2,781,379 + CCNA_02630 0.71 -0.4 2,781,379 + CCNA_02630 0.71 +0.1 2,781,433 + CCNA_02630 0.82 +0.3 2,781,469 + CCNA_02630 0.89 +0.1 2,781,486 + -0.1 2,781,514 + -2.1 2,781,521 + -0.3 2,781,521 + +0.2 2,781,529 - -0.1 2,781,555 + -0.4 2,781,593 + -0.2 2,781,593 + +0.2 2,781,602 + -0.4 2,781,608 - +0.9 2,781,628 + CCNA_02631 0.18 -1.0 2,781,631 - CCNA_02631 0.20 -0.1 2,781,710 + CCNA_02631 0.65 +1.6 2,781,741 - CCNA_02631 0.83 -1.9 2,781,768 + -1.2 2,781,865 - -0.6 2,781,865 - -0.2 2,781,884 - +0.3 2,781,904 - -0.0 2,781,925 - -0.1 2,781,935 + +0.1 2,781,955 + -1.2 2,781,955 + -0.8 2,781,963 - +1.7 2,781,969 - +0.2 2,781,981 + +0.3 2,781,986 + -0.0 2,781,989 + -0.6 2,781,996 + -0.7 2,781,996 + -0.1 2,781,996 + -1.2 2,781,996 + +0.6 2,781,996 + +0.8 2,781,996 + +0.4 2,781,996 + -0.4 2,781,996 + -0.9 2,781,996 + -0.6 2,781,996 + +0.2 2,781,996 + +0.4 2,781,999 - +0.3 2,782,004 - +0.2 2,782,004 - +0.6 2,782,004 - -0.3 2,782,006 + +0.1 2,782,014 - -0.3 2,782,036 + +0.1 2,782,040 - -0.0 2,782,051 + -0.5 2,782,060 + +0.4 2,782,068 - -1.0 2,782,068 - +0.1 2,782,068 - -0.0 2,782,070 + -2.2 2,782,070 + +1.5 2,782,073 - -0.2 2,782,078 - +0.3 2,782,083 - +1.4 2,782,088 - -1.6 2,782,088 - -0.7 2,782,088 - -0.9 2,782,122 + +0.3 2,782,145 - -2.5 2,782,164 - -0.3 2,782,217 - CCNA_02632 0.15 -1.9 2,782,220 + CCNA_02632 0.16 -1.4 2,782,220 + CCNA_02632 0.16 -0.5 2,782,235 + CCNA_02632 0.18 -0.9 2,782,235 + CCNA_02632 0.18 +0.3 2,782,235 + CCNA_02632 0.18 +0.4 2,782,235 + CCNA_02632 0.18 +0.7 2,782,235 + CCNA_02632 0.18 +0.8 2,782,235 + CCNA_02632 0.18 -1.2 2,782,243 - CCNA_02632 0.20 -0.2 2,782,256 - CCNA_02632 0.22 -0.3 2,782,261 - CCNA_02632 0.22 -0.6 2,782,368 - CCNA_02632 0.40 +0.8 2,782,368 - CCNA_02632 0.40 -0.4 2,782,405 + CCNA_02632 0.45 +0.3 2,782,405 + CCNA_02632 0.45 -0.4 2,782,413 - CCNA_02632 0.47 +0.6 2,782,435 + CCNA_02632 0.50 -1.2 2,782,440 + CCNA_02632 0.51 -0.0 2,782,461 - CCNA_02632 0.54 +1.0 2,782,462 + CCNA_02632 0.55 +0.6 2,782,462 + CCNA_02632 0.55 -0.1 2,782,468 - CCNA_02632 0.56 -0.2 2,782,470 - CCNA_02632 0.56 +0.3 2,782,470 - CCNA_02632 0.56 -0.2 2,782,493 - CCNA_02632 0.59 -1.1 2,782,495 + CCNA_02632 0.60 +0.1 2,782,505 + CCNA_02632 0.61 -0.9 2,782,510 - CCNA_02632 0.62 -0.7 2,782,515 + CCNA_02632 0.63 -0.3 2,782,520 + CCNA_02632 0.64 -1.2 2,782,520 + CCNA_02632 0.64 -1.2 2,782,528 - CCNA_02632 0.65 -1.4 2,782,528 - CCNA_02632 0.65 +0.5 2,782,532 + CCNA_02632 0.66 +0.2 2,782,574 + CCNA_02632 0.72 +0.1 2,782,574 + CCNA_02632 0.72 +0.4 2,782,574 + CCNA_02632 0.72 -0.2 2,782,574 + CCNA_02632 0.72 -0.9 2,782,579 + CCNA_02632 0.73 -0.8 2,782,579 + CCNA_02632 0.73 -1.3 2,782,582 - CCNA_02632 0.74 -1.0 2,782,582 - CCNA_02632 0.74 -0.8 2,782,582 - CCNA_02632 0.74 +0.0 2,782,613 - CCNA_02632 0.79 -1.0 2,782,613 - CCNA_02632 0.79 +1.8 2,782,613 - CCNA_02632 0.79 -1.0 2,782,645 - CCNA_02632 0.84 +1.1 2,782,680 + CCNA_02632 0.89 -0.0 2,782,680 + CCNA_02632 0.89 +0.4 2,782,680 + CCNA_02632 0.89 +0.3 2,782,680 + CCNA_02632 0.89 -0.4 2,782,688 - -0.3 2,782,688 - +0.1 2,782,696 + -0.6 2,782,697 - -0.1 2,782,697 - -1.3 2,782,754 + -0.7
Or see this region's nucleotide sequence