Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02571 and CCNA_02572 are separated by 188 nucleotides CCNA_02572 and CCNA_02573 are separated by 2 nucleotides CCNA_02573 and CCNA_02574 overlap by 14 nucleotides
CCNA_02571: CCNA_02571 - major facilitator superfamily transporter, at 2,722,855 to 2,724,348
_02571
CCNA_02572: CCNA_02572 - adenylosuccinate lyase, at 2,724,537 to 2,725,847
_02572
CCNA_02573: CCNA_02573 - proline hydroxylase, at 2,725,850 to 2,726,593
_02573
CCNA_02574: CCNA_02574 - MUG-like uracil-DNA glycosylase family protein, at 2,726,580 to 2,727,155
_02574
Position (kb)
2724
2725
2726 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2723.547 kb on + strand, within CCNA_02571 at 2723.547 kb on + strand, within CCNA_02571 at 2723.566 kb on + strand, within CCNA_02571 at 2723.578 kb on - strand, within CCNA_02571 at 2723.596 kb on + strand, within CCNA_02571 at 2723.596 kb on + strand, within CCNA_02571 at 2723.596 kb on + strand, within CCNA_02571 at 2723.604 kb on - strand, within CCNA_02571 at 2723.604 kb on - strand, within CCNA_02571 at 2723.608 kb on + strand, within CCNA_02571 at 2723.631 kb on + strand, within CCNA_02571 at 2723.645 kb on + strand, within CCNA_02571 at 2723.670 kb on - strand, within CCNA_02571 at 2723.681 kb on + strand, within CCNA_02571 at 2723.687 kb on + strand, within CCNA_02571 at 2723.688 kb on - strand, within CCNA_02571 at 2723.689 kb on - strand, within CCNA_02571 at 2723.689 kb on - strand, within CCNA_02571 at 2723.689 kb on - strand, within CCNA_02571 at 2723.695 kb on - strand, within CCNA_02571 at 2723.720 kb on - strand, within CCNA_02571 at 2723.757 kb on + strand, within CCNA_02571 at 2723.770 kb on - strand, within CCNA_02571 at 2723.798 kb on - strand, within CCNA_02571 at 2723.802 kb on + strand, within CCNA_02571 at 2723.803 kb on - strand, within CCNA_02571 at 2723.809 kb on + strand, within CCNA_02571 at 2723.809 kb on + strand, within CCNA_02571 at 2723.809 kb on + strand, within CCNA_02571 at 2723.809 kb on + strand, within CCNA_02571 at 2723.809 kb on + strand, within CCNA_02571 at 2723.809 kb on + strand, within CCNA_02571 at 2723.809 kb on + strand, within CCNA_02571 at 2723.809 kb on + strand, within CCNA_02571 at 2723.810 kb on - strand, within CCNA_02571 at 2723.812 kb on - strand, within CCNA_02571 at 2723.812 kb on - strand, within CCNA_02571 at 2723.817 kb on - strand, within CCNA_02571 at 2723.817 kb on - strand, within CCNA_02571 at 2723.817 kb on - strand, within CCNA_02571 at 2723.817 kb on - strand, within CCNA_02571 at 2723.817 kb on - strand, within CCNA_02571 at 2723.817 kb on - strand, within CCNA_02571 at 2723.828 kb on + strand, within CCNA_02571 at 2723.836 kb on - strand, within CCNA_02571 at 2723.855 kb on - strand, within CCNA_02571 at 2723.895 kb on + strand, within CCNA_02571 at 2723.895 kb on + strand, within CCNA_02571 at 2723.903 kb on - strand, within CCNA_02571 at 2723.950 kb on - strand, within CCNA_02571 at 2723.961 kb on - strand, within CCNA_02571 at 2723.961 kb on - strand, within CCNA_02571 at 2723.990 kb on - strand, within CCNA_02571 at 2724.003 kb on - strand, within CCNA_02571 at 2724.032 kb on + strand, within CCNA_02571 at 2724.037 kb on + strand, within CCNA_02571 at 2724.082 kb on + strand, within CCNA_02571 at 2724.086 kb on - strand, within CCNA_02571 at 2724.145 kb on + strand, within CCNA_02571 at 2724.153 kb on - strand, within CCNA_02571 at 2724.153 kb on - strand, within CCNA_02571 at 2724.153 kb on - strand, within CCNA_02571 at 2724.161 kb on + strand, within CCNA_02571 at 2724.169 kb on - strand, within CCNA_02571 at 2724.183 kb on + strand, within CCNA_02571 at 2724.191 kb on - strand, within CCNA_02571 at 2724.212 kb on - strand at 2724.216 kb on + strand at 2724.216 kb on + strand at 2724.216 kb on + strand at 2724.216 kb on + strand at 2724.216 kb on + strand at 2724.216 kb on + strand at 2724.224 kb on - strand at 2724.224 kb on - strand at 2724.224 kb on - strand at 2724.224 kb on - strand at 2724.224 kb on - strand at 2724.224 kb on - strand at 2724.257 kb on - strand at 2724.276 kb on + strand at 2724.281 kb on + strand at 2724.286 kb on + strand at 2724.294 kb on - strand at 2724.294 kb on - strand at 2724.294 kb on - strand at 2724.326 kb on - strand at 2724.327 kb on - strand at 2724.327 kb on - strand at 2724.327 kb on - strand at 2724.327 kb on - strand at 2724.327 kb on - strand at 2724.350 kb on - strand at 2724.384 kb on + strand at 2724.400 kb on + strand at 2724.404 kb on + strand at 2724.472 kb on + strand at 2724.477 kb on + strand at 2724.485 kb on - strand at 2724.497 kb on + strand at 2724.585 kb on - strand at 2724.599 kb on + strand at 2724.644 kb on + strand at 2724.702 kb on + strand, within CCNA_02572 at 2724.702 kb on + strand, within CCNA_02572 at 2724.702 kb on + strand, within CCNA_02572 at 2724.702 kb on + strand, within CCNA_02572 at 2724.710 kb on - strand, within CCNA_02572 at 2724.710 kb on - strand, within CCNA_02572 at 2724.751 kb on + strand, within CCNA_02572 at 2724.855 kb on - strand, within CCNA_02572 at 2724.884 kb on + strand, within CCNA_02572 at 2724.900 kb on - strand, within CCNA_02572 at 2724.928 kb on + strand, within CCNA_02572 at 2724.991 kb on + strand, within CCNA_02572 at 2724.999 kb on - strand, within CCNA_02572 at 2725.021 kb on - strand, within CCNA_02572 at 2725.033 kb on + strand, within CCNA_02572 at 2725.133 kb on + strand, within CCNA_02572 at 2725.176 kb on + strand, within CCNA_02572 at 2725.184 kb on + strand, within CCNA_02572 at 2725.317 kb on + strand, within CCNA_02572 at 2725.354 kb on + strand, within CCNA_02572 at 2725.362 kb on - strand, within CCNA_02572 at 2725.397 kb on - strand, within CCNA_02572 at 2725.458 kb on - strand, within CCNA_02572 at 2725.468 kb on - strand, within CCNA_02572 at 2725.468 kb on - strand, within CCNA_02572 at 2725.483 kb on + strand, within CCNA_02572 at 2725.507 kb on + strand, within CCNA_02572 at 2725.512 kb on + strand, within CCNA_02572 at 2725.673 kb on + strand, within CCNA_02572 at 2725.681 kb on - strand, within CCNA_02572 at 2725.681 kb on - strand, within CCNA_02572 at 2725.750 kb on + strand at 2725.896 kb on - strand at 2725.938 kb on + strand, within CCNA_02573 at 2725.991 kb on - strand, within CCNA_02573 at 2725.991 kb on - strand, within CCNA_02573 at 2725.991 kb on - strand, within CCNA_02573 at 2726.039 kb on + strand, within CCNA_02573 at 2726.088 kb on - strand, within CCNA_02573 at 2726.140 kb on - strand, within CCNA_02573 at 2726.174 kb on - strand, within CCNA_02573 at 2726.224 kb on - strand, within CCNA_02573 at 2726.224 kb on - strand, within CCNA_02573 at 2726.226 kb on + strand, within CCNA_02573 at 2726.234 kb on - strand, within CCNA_02573 at 2726.281 kb on + strand, within CCNA_02573 at 2726.293 kb on + strand, within CCNA_02573 at 2726.319 kb on + strand, within CCNA_02573 at 2726.325 kb on + strand, within CCNA_02573 at 2726.364 kb on + strand, within CCNA_02573 at 2726.364 kb on + strand, within CCNA_02573 at 2726.370 kb on + strand, within CCNA_02573 at 2726.372 kb on - strand, within CCNA_02573 at 2726.378 kb on - strand, within CCNA_02573 at 2726.384 kb on + strand, within CCNA_02573 at 2726.419 kb on + strand, within CCNA_02573 at 2726.459 kb on - strand, within CCNA_02573 at 2726.479 kb on - strand, within CCNA_02573 at 2726.481 kb on + strand, within CCNA_02573 at 2726.481 kb on + strand, within CCNA_02573 at 2726.497 kb on + strand, within CCNA_02573 at 2726.542 kb on - strand at 2726.592 kb on + strand at 2726.602 kb on - strand at 2726.644 kb on - strand, within CCNA_02574 at 2726.681 kb on + strand, within CCNA_02574 at 2726.689 kb on - strand, within CCNA_02574 at 2726.689 kb on - strand, within CCNA_02574 at 2726.689 kb on - strand, within CCNA_02574 at 2726.689 kb on - strand, within CCNA_02574 at 2726.703 kb on + strand, within CCNA_02574 at 2726.747 kb on - strand, within CCNA_02574 at 2726.772 kb on + strand, within CCNA_02574
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 2,723,547 + CCNA_02571 0.46 -0.2 2,723,547 + CCNA_02571 0.46 +0.7 2,723,566 + CCNA_02571 0.48 -0.3 2,723,578 - CCNA_02571 0.48 -0.1 2,723,596 + CCNA_02571 0.50 -0.6 2,723,596 + CCNA_02571 0.50 +0.6 2,723,596 + CCNA_02571 0.50 -0.1 2,723,604 - CCNA_02571 0.50 -0.4 2,723,604 - CCNA_02571 0.50 -0.0 2,723,608 + CCNA_02571 0.50 +0.7 2,723,631 + CCNA_02571 0.52 -0.4 2,723,645 + CCNA_02571 0.53 -1.7 2,723,670 - CCNA_02571 0.55 -1.1 2,723,681 + CCNA_02571 0.55 -1.6 2,723,687 + CCNA_02571 0.56 -0.1 2,723,688 - CCNA_02571 0.56 -3.3 2,723,689 - CCNA_02571 0.56 +0.8 2,723,689 - CCNA_02571 0.56 +0.1 2,723,689 - CCNA_02571 0.56 -0.9 2,723,695 - CCNA_02571 0.56 -1.1 2,723,720 - CCNA_02571 0.58 -1.4 2,723,757 + CCNA_02571 0.60 +0.6 2,723,770 - CCNA_02571 0.61 -1.2 2,723,798 - CCNA_02571 0.63 -0.2 2,723,802 + CCNA_02571 0.63 -2.0 2,723,803 - CCNA_02571 0.63 +1.7 2,723,809 + CCNA_02571 0.64 +2.1 2,723,809 + CCNA_02571 0.64 -1.4 2,723,809 + CCNA_02571 0.64 +0.2 2,723,809 + CCNA_02571 0.64 -1.1 2,723,809 + CCNA_02571 0.64 -3.1 2,723,809 + CCNA_02571 0.64 -1.1 2,723,809 + CCNA_02571 0.64 +0.2 2,723,809 + CCNA_02571 0.64 +0.3 2,723,810 - CCNA_02571 0.64 -0.1 2,723,812 - CCNA_02571 0.64 -0.5 2,723,812 - CCNA_02571 0.64 +0.5 2,723,817 - CCNA_02571 0.64 -1.0 2,723,817 - CCNA_02571 0.64 +2.8 2,723,817 - CCNA_02571 0.64 -0.8 2,723,817 - CCNA_02571 0.64 -1.2 2,723,817 - CCNA_02571 0.64 -0.9 2,723,817 - CCNA_02571 0.64 -0.9 2,723,828 + CCNA_02571 0.65 +0.0 2,723,836 - CCNA_02571 0.66 +0.2 2,723,855 - CCNA_02571 0.67 -1.5 2,723,895 + CCNA_02571 0.70 -1.6 2,723,895 + CCNA_02571 0.70 +0.0 2,723,903 - CCNA_02571 0.70 -0.7 2,723,950 - CCNA_02571 0.73 -0.2 2,723,961 - CCNA_02571 0.74 +0.0 2,723,961 - CCNA_02571 0.74 -0.6 2,723,990 - CCNA_02571 0.76 +0.3 2,724,003 - CCNA_02571 0.77 -0.8 2,724,032 + CCNA_02571 0.79 -1.5 2,724,037 + CCNA_02571 0.79 -0.4 2,724,082 + CCNA_02571 0.82 +0.4 2,724,086 - CCNA_02571 0.82 -2.3 2,724,145 + CCNA_02571 0.86 +0.1 2,724,153 - CCNA_02571 0.87 -1.9 2,724,153 - CCNA_02571 0.87 +0.4 2,724,153 - CCNA_02571 0.87 -2.1 2,724,161 + CCNA_02571 0.87 +0.2 2,724,169 - CCNA_02571 0.88 -0.6 2,724,183 + CCNA_02571 0.89 +0.2 2,724,191 - CCNA_02571 0.89 -0.9 2,724,212 - -0.8 2,724,216 + +0.1 2,724,216 + +0.1 2,724,216 + -0.8 2,724,216 + +0.5 2,724,216 + +0.7 2,724,216 + +2.2 2,724,224 - +1.7 2,724,224 - -0.8 2,724,224 - -0.0 2,724,224 - +0.3 2,724,224 - -0.4 2,724,224 - -1.4 2,724,257 - -2.5 2,724,276 + -0.1 2,724,281 + -1.1 2,724,286 + -0.4 2,724,294 - -0.4 2,724,294 - +0.0 2,724,294 - -0.1 2,724,326 - -0.0 2,724,327 - -0.5 2,724,327 - -2.0 2,724,327 - -0.9 2,724,327 - -0.1 2,724,327 - -0.3 2,724,350 - -0.4 2,724,384 + -1.2 2,724,400 + +0.3 2,724,404 + -0.3 2,724,472 + -1.8 2,724,477 + +0.8 2,724,485 - +2.3 2,724,497 + -0.5 2,724,585 - -0.3 2,724,599 + +0.2 2,724,644 + -1.2 2,724,702 + CCNA_02572 0.13 -0.5 2,724,702 + CCNA_02572 0.13 +0.5 2,724,702 + CCNA_02572 0.13 +0.8 2,724,702 + CCNA_02572 0.13 -0.6 2,724,710 - CCNA_02572 0.13 -0.5 2,724,710 - CCNA_02572 0.13 -1.0 2,724,751 + CCNA_02572 0.16 -0.5 2,724,855 - CCNA_02572 0.24 +0.2 2,724,884 + CCNA_02572 0.26 +0.3 2,724,900 - CCNA_02572 0.28 +0.2 2,724,928 + CCNA_02572 0.30 -2.0 2,724,991 + CCNA_02572 0.35 -0.8 2,724,999 - CCNA_02572 0.35 +0.3 2,725,021 - CCNA_02572 0.37 -1.2 2,725,033 + CCNA_02572 0.38 +0.2 2,725,133 + CCNA_02572 0.45 -0.6 2,725,176 + CCNA_02572 0.49 -0.0 2,725,184 + CCNA_02572 0.49 -2.1 2,725,317 + CCNA_02572 0.59 -2.2 2,725,354 + CCNA_02572 0.62 -0.9 2,725,362 - CCNA_02572 0.63 +0.2 2,725,397 - CCNA_02572 0.66 +0.5 2,725,458 - CCNA_02572 0.70 +0.0 2,725,468 - CCNA_02572 0.71 -1.3 2,725,468 - CCNA_02572 0.71 -1.5 2,725,483 + CCNA_02572 0.72 +2.3 2,725,507 + CCNA_02572 0.74 -1.0 2,725,512 + CCNA_02572 0.74 -1.9 2,725,673 + CCNA_02572 0.87 -0.3 2,725,681 - CCNA_02572 0.87 -1.9 2,725,681 - CCNA_02572 0.87 +0.8 2,725,750 + +0.2 2,725,896 - -0.7 2,725,938 + CCNA_02573 0.12 +0.5 2,725,991 - CCNA_02573 0.19 -1.3 2,725,991 - CCNA_02573 0.19 -0.3 2,725,991 - CCNA_02573 0.19 +0.0 2,726,039 + CCNA_02573 0.25 +0.4 2,726,088 - CCNA_02573 0.32 -0.6 2,726,140 - CCNA_02573 0.39 +0.4 2,726,174 - CCNA_02573 0.44 -1.5 2,726,224 - CCNA_02573 0.50 -0.1 2,726,224 - CCNA_02573 0.50 -1.3 2,726,226 + CCNA_02573 0.51 -0.1 2,726,234 - CCNA_02573 0.52 -0.5 2,726,281 + CCNA_02573 0.58 +0.3 2,726,293 + CCNA_02573 0.60 -0.3 2,726,319 + CCNA_02573 0.63 +0.4 2,726,325 + CCNA_02573 0.64 +0.1 2,726,364 + CCNA_02573 0.69 +1.9 2,726,364 + CCNA_02573 0.69 +0.2 2,726,370 + CCNA_02573 0.70 +0.2 2,726,372 - CCNA_02573 0.70 +0.2 2,726,378 - CCNA_02573 0.71 -0.8 2,726,384 + CCNA_02573 0.72 +0.8 2,726,419 + CCNA_02573 0.76 +0.1 2,726,459 - CCNA_02573 0.82 -0.3 2,726,479 - CCNA_02573 0.85 -0.3 2,726,481 + CCNA_02573 0.85 -0.8 2,726,481 + CCNA_02573 0.85 -0.4 2,726,497 + CCNA_02573 0.87 -0.0 2,726,542 - -1.3 2,726,592 + +0.3 2,726,602 - -0.4 2,726,644 - CCNA_02574 0.11 -0.2 2,726,681 + CCNA_02574 0.18 +0.1 2,726,689 - CCNA_02574 0.19 +1.1 2,726,689 - CCNA_02574 0.19 +0.6 2,726,689 - CCNA_02574 0.19 -0.6 2,726,689 - CCNA_02574 0.19 +0.2 2,726,703 + CCNA_02574 0.21 -0.4 2,726,747 - CCNA_02574 0.29 -1.0 2,726,772 + CCNA_02574 0.33 +1.6
Or see this region's nucleotide sequence