Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02530 and CCNA_02531 overlap by 4 nucleotides CCNA_02531 and CCNA_02532 are separated by 105 nucleotides CCNA_02532 and CCNA_02533 are separated by 16 nucleotides CCNA_02533 and CCNA_03969 overlap by 103 nucleotides CCNA_03969 and CCNA_02534 are separated by 9 nucleotides CCNA_02534 and CCNA_02535 are separated by 178 nucleotides
CCNA_02530: CCNA_02530 - SAM-dependent methyltransferase, at 2,678,387 to 2,679,592
_02530
CCNA_02531: CCNA_02531 - proline-rich hypothetical protein, at 2,679,589 to 2,680,371
_02531
CCNA_02532: CCNA_02532 - hypothetical protein, at 2,680,477 to 2,680,680
_02532
CCNA_02533: CCNA_02533 - hypothetical protein, at 2,680,697 to 2,680,966
_02533
CCNA_03969: CCNA_03969 - hypothetical protein, at 2,680,864 to 2,680,953
_03969
CCNA_02534: CCNA_02534 - hypothetical protein, at 2,680,963 to 2,681,133
_02534
CCNA_02535: CCNA_02535 - DNA topoisomerase I, at 2,681,312 to 2,684,011
_02535
Position (kb)
2680
2681 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2679.492 kb on + strand at 2679.492 kb on + strand at 2679.577 kb on + strand at 2679.577 kb on + strand at 2679.577 kb on + strand at 2679.577 kb on + strand at 2679.587 kb on + strand at 2679.587 kb on + strand at 2679.646 kb on - strand at 2679.662 kb on + strand at 2679.686 kb on + strand, within CCNA_02531 at 2679.693 kb on - strand, within CCNA_02531 at 2679.693 kb on - strand, within CCNA_02531 at 2679.698 kb on - strand, within CCNA_02531 at 2679.698 kb on - strand, within CCNA_02531 at 2679.765 kb on + strand, within CCNA_02531 at 2679.823 kb on - strand, within CCNA_02531 at 2679.958 kb on + strand, within CCNA_02531 at 2679.986 kb on + strand, within CCNA_02531 at 2679.996 kb on + strand, within CCNA_02531 at 2680.025 kb on + strand, within CCNA_02531 at 2680.061 kb on - strand, within CCNA_02531 at 2680.071 kb on - strand, within CCNA_02531 at 2680.071 kb on - strand, within CCNA_02531 at 2680.078 kb on - strand, within CCNA_02531 at 2680.115 kb on + strand, within CCNA_02531 at 2680.115 kb on + strand, within CCNA_02531 at 2680.124 kb on - strand, within CCNA_02531 at 2680.257 kb on - strand, within CCNA_02531 at 2680.293 kb on - strand at 2680.298 kb on - strand at 2680.309 kb on - strand at 2680.323 kb on + strand at 2680.350 kb on - strand at 2680.389 kb on + strand at 2680.397 kb on - strand at 2680.397 kb on - strand at 2680.397 kb on - strand at 2680.419 kb on - strand at 2680.473 kb on + strand at 2680.482 kb on + strand at 2680.508 kb on + strand, within CCNA_02532 at 2680.517 kb on - strand, within CCNA_02532 at 2680.596 kb on + strand, within CCNA_02532 at 2680.610 kb on + strand, within CCNA_02532 at 2680.620 kb on + strand, within CCNA_02532 at 2680.626 kb on + strand, within CCNA_02532 at 2680.626 kb on + strand, within CCNA_02532 at 2680.634 kb on - strand, within CCNA_02532 at 2680.634 kb on - strand, within CCNA_02532 at 2680.634 kb on - strand, within CCNA_02532 at 2680.675 kb on - strand at 2680.690 kb on - strand at 2680.746 kb on - strand, within CCNA_02533 at 2680.748 kb on - strand, within CCNA_02533 at 2680.775 kb on - strand, within CCNA_02533 at 2680.793 kb on + strand, within CCNA_02533 at 2680.868 kb on - strand at 2680.871 kb on + strand at 2680.879 kb on - strand at 2680.883 kb on + strand at 2680.896 kb on - strand at 2680.948 kb on + strand at 2680.948 kb on + strand at 2680.986 kb on + strand, within CCNA_02534 at 2680.994 kb on - strand, within CCNA_02534 at 2681.018 kb on + strand, within CCNA_02534 at 2681.029 kb on - strand, within CCNA_02534 at 2681.062 kb on + strand, within CCNA_02534 at 2681.069 kb on + strand, within CCNA_02534 at 2681.069 kb on + strand, within CCNA_02534 at 2681.077 kb on - strand, within CCNA_02534 at 2681.093 kb on + strand, within CCNA_02534 at 2681.155 kb on - strand at 2681.155 kb on - strand at 2681.169 kb on - strand at 2681.178 kb on + strand at 2681.179 kb on + strand at 2681.259 kb on + strand at 2681.272 kb on + strand at 2681.313 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 2,679,492 + -0.6 2,679,492 + +0.4 2,679,577 + +0.5 2,679,577 + -0.3 2,679,577 + -0.1 2,679,577 + -0.3 2,679,587 + -0.5 2,679,587 + +0.3 2,679,646 - +0.0 2,679,662 + +2.0 2,679,686 + CCNA_02531 0.12 +0.2 2,679,693 - CCNA_02531 0.13 -0.2 2,679,693 - CCNA_02531 0.13 +2.8 2,679,698 - CCNA_02531 0.14 -0.6 2,679,698 - CCNA_02531 0.14 -1.2 2,679,765 + CCNA_02531 0.22 +0.5 2,679,823 - CCNA_02531 0.30 -0.8 2,679,958 + CCNA_02531 0.47 +0.4 2,679,986 + CCNA_02531 0.51 -0.2 2,679,996 + CCNA_02531 0.52 -0.3 2,680,025 + CCNA_02531 0.56 -1.1 2,680,061 - CCNA_02531 0.60 -0.6 2,680,071 - CCNA_02531 0.62 +0.1 2,680,071 - CCNA_02531 0.62 -0.2 2,680,078 - CCNA_02531 0.62 +0.5 2,680,115 + CCNA_02531 0.67 +0.4 2,680,115 + CCNA_02531 0.67 -0.0 2,680,124 - CCNA_02531 0.68 +1.3 2,680,257 - CCNA_02531 0.85 -0.9 2,680,293 - -0.0 2,680,298 - -0.5 2,680,309 - -0.4 2,680,323 + -2.2 2,680,350 - -1.1 2,680,389 + -0.4 2,680,397 - +0.4 2,680,397 - +1.2 2,680,397 - +2.0 2,680,419 - -0.8 2,680,473 + +0.3 2,680,482 + +0.2 2,680,508 + CCNA_02532 0.15 +0.6 2,680,517 - CCNA_02532 0.20 -1.1 2,680,596 + CCNA_02532 0.58 -1.2 2,680,610 + CCNA_02532 0.65 -0.0 2,680,620 + CCNA_02532 0.70 -1.2 2,680,626 + CCNA_02532 0.73 -1.0 2,680,626 + CCNA_02532 0.73 -1.2 2,680,634 - CCNA_02532 0.77 +1.2 2,680,634 - CCNA_02532 0.77 +1.5 2,680,634 - CCNA_02532 0.77 -0.2 2,680,675 - -0.2 2,680,690 - +0.8 2,680,746 - CCNA_02533 0.18 -1.0 2,680,748 - CCNA_02533 0.19 +0.2 2,680,775 - CCNA_02533 0.29 +0.4 2,680,793 + CCNA_02533 0.36 +0.3 2,680,868 - +0.5 2,680,871 + -1.4 2,680,879 - +0.3 2,680,883 + -1.5 2,680,896 - -0.3 2,680,948 + +0.4 2,680,948 + +0.3 2,680,986 + CCNA_02534 0.13 +0.5 2,680,994 - CCNA_02534 0.18 +0.3 2,681,018 + CCNA_02534 0.32 -1.2 2,681,029 - CCNA_02534 0.39 -0.5 2,681,062 + CCNA_02534 0.58 -0.1 2,681,069 + CCNA_02534 0.62 +0.0 2,681,069 + CCNA_02534 0.62 -0.2 2,681,077 - CCNA_02534 0.67 +0.1 2,681,093 + CCNA_02534 0.76 +0.0 2,681,155 - +0.6 2,681,155 - -1.4 2,681,169 - +0.4 2,681,178 + -1.1 2,681,179 + +0.2 2,681,259 + +1.2 2,681,272 + +0.4 2,681,313 - -1.7
Or see this region's nucleotide sequence