Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02460

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02459 and CCNA_02460 overlap by 4 nucleotidesCCNA_02460 and CCNA_02461 are separated by 36 nucleotidesCCNA_02461 and CCNA_02462 are separated by 183 nucleotides CCNA_02459: CCNA_02459 - methylmalonyl-CoA mutase alpha subunit, at 2,601,067 to 2,603,211 _02459 CCNA_02460: CCNA_02460 - hypothetical protein, at 2,603,208 to 2,603,669 _02460 CCNA_02461: CCNA_02461 - hypothetical protein, at 2,603,706 to 2,604,170 _02461 CCNA_02462: CCNA_02462 - hypothetical protein, at 2,604,354 to 2,604,671 _02462 Position (kb) 2603 2604Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2602.251 kb on + strand, within CCNA_02459at 2602.253 kb on + strand, within CCNA_02459at 2602.271 kb on + strand, within CCNA_02459at 2602.291 kb on + strand, within CCNA_02459at 2602.296 kb on + strand, within CCNA_02459at 2602.299 kb on - strand, within CCNA_02459at 2602.338 kb on + strand, within CCNA_02459at 2602.340 kb on + strand, within CCNA_02459at 2602.340 kb on + strand, within CCNA_02459at 2602.345 kb on + strand, within CCNA_02459at 2602.345 kb on + strand, within CCNA_02459at 2602.348 kb on - strand, within CCNA_02459at 2602.355 kb on + strand, within CCNA_02459at 2602.445 kb on + strand, within CCNA_02459at 2602.535 kb on - strand, within CCNA_02459at 2602.535 kb on - strand, within CCNA_02459at 2602.535 kb on - strand, within CCNA_02459at 2602.535 kb on - strand, within CCNA_02459at 2602.573 kb on - strand, within CCNA_02459at 2602.601 kb on - strand, within CCNA_02459at 2602.601 kb on - strand, within CCNA_02459at 2602.643 kb on - strand, within CCNA_02459at 2602.656 kb on + strand, within CCNA_02459at 2602.709 kb on - strand, within CCNA_02459at 2602.709 kb on - strand, within CCNA_02459at 2602.744 kb on + strand, within CCNA_02459at 2602.767 kb on + strand, within CCNA_02459at 2602.767 kb on + strand, within CCNA_02459at 2602.767 kb on + strand, within CCNA_02459at 2602.775 kb on - strand, within CCNA_02459at 2602.791 kb on + strand, within CCNA_02459at 2602.831 kb on + strand, within CCNA_02459at 2602.831 kb on + strand, within CCNA_02459at 2602.839 kb on - strand, within CCNA_02459at 2602.848 kb on - strand, within CCNA_02459at 2602.860 kb on - strand, within CCNA_02459at 2602.905 kb on - strand, within CCNA_02459at 2602.922 kb on - strand, within CCNA_02459at 2602.922 kb on - strand, within CCNA_02459at 2602.922 kb on - strand, within CCNA_02459at 2602.928 kb on - strand, within CCNA_02459at 2602.956 kb on - strand, within CCNA_02459at 2602.956 kb on - strand, within CCNA_02459at 2603.024 kb on - strandat 2603.026 kb on + strandat 2603.062 kb on + strandat 2603.070 kb on - strandat 2603.091 kb on + strandat 2603.091 kb on + strandat 2603.195 kb on + strandat 2603.203 kb on - strandat 2603.205 kb on + strandat 2603.205 kb on + strandat 2603.205 kb on + strandat 2603.213 kb on - strandat 2603.213 kb on - strandat 2603.279 kb on - strand, within CCNA_02460at 2603.309 kb on - strand, within CCNA_02460at 2603.341 kb on + strand, within CCNA_02460at 2603.343 kb on + strand, within CCNA_02460at 2603.372 kb on - strand, within CCNA_02460at 2603.393 kb on + strand, within CCNA_02460at 2603.401 kb on - strand, within CCNA_02460at 2603.401 kb on - strand, within CCNA_02460at 2603.401 kb on - strand, within CCNA_02460at 2603.419 kb on + strand, within CCNA_02460at 2603.421 kb on + strand, within CCNA_02460at 2603.424 kb on - strand, within CCNA_02460at 2603.424 kb on - strand, within CCNA_02460at 2603.440 kb on - strand, within CCNA_02460at 2603.471 kb on + strand, within CCNA_02460at 2603.478 kb on + strand, within CCNA_02460at 2603.479 kb on + strand, within CCNA_02460at 2603.479 kb on - strand, within CCNA_02460at 2603.487 kb on - strand, within CCNA_02460at 2603.489 kb on + strand, within CCNA_02460at 2603.503 kb on + strand, within CCNA_02460at 2603.539 kb on - strand, within CCNA_02460at 2603.548 kb on - strand, within CCNA_02460at 2603.548 kb on - strand, within CCNA_02460at 2603.549 kb on + strand, within CCNA_02460at 2603.549 kb on + strand, within CCNA_02460at 2603.577 kb on + strand, within CCNA_02460at 2603.577 kb on - strand, within CCNA_02460at 2603.577 kb on - strand, within CCNA_02460at 2603.599 kb on + strand, within CCNA_02460at 2603.605 kb on + strand, within CCNA_02460at 2603.616 kb on + strand, within CCNA_02460at 2603.623 kb on + strandat 2603.657 kb on - strandat 2603.665 kb on + strandat 2603.675 kb on + strandat 2603.683 kb on - strandat 2603.683 kb on - strandat 2603.717 kb on - strandat 2603.742 kb on + strandat 2603.747 kb on + strandat 2603.769 kb on + strand, within CCNA_02461at 2603.790 kb on - strand, within CCNA_02461at 2603.812 kb on - strand, within CCNA_02461at 2603.832 kb on - strand, within CCNA_02461at 2603.856 kb on + strand, within CCNA_02461at 2603.856 kb on + strand, within CCNA_02461at 2603.935 kb on + strand, within CCNA_02461at 2603.940 kb on + strand, within CCNA_02461at 2603.940 kb on + strand, within CCNA_02461at 2603.948 kb on - strand, within CCNA_02461at 2603.948 kb on - strand, within CCNA_02461at 2603.948 kb on - strand, within CCNA_02461at 2603.988 kb on - strand, within CCNA_02461at 2604.002 kb on - strand, within CCNA_02461at 2604.045 kb on - strand, within CCNA_02461at 2604.058 kb on - strand, within CCNA_02461at 2604.114 kb on + strand, within CCNA_02461at 2604.185 kb on + strandat 2604.185 kb on + strandat 2604.244 kb on + strandat 2604.287 kb on + strandat 2604.364 kb on + strandat 2604.364 kb on + strandat 2604.372 kb on - strandat 2604.393 kb on + strand, within CCNA_02462at 2604.409 kb on - strand, within CCNA_02462at 2604.422 kb on - strand, within CCNA_02462at 2604.444 kb on - strand, within CCNA_02462at 2604.518 kb on - strand, within CCNA_02462at 2604.518 kb on - strand, within CCNA_02462at 2604.548 kb on + strand, within CCNA_02462at 2604.566 kb on + strand, within CCNA_02462at 2604.566 kb on - strand, within CCNA_02462at 2604.572 kb on + strand, within CCNA_02462at 2604.633 kb on - strand, within CCNA_02462at 2604.665 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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2,602,251 + CCNA_02459 0.55 +1.0
2,602,253 + CCNA_02459 0.55 -0.0
2,602,271 + CCNA_02459 0.56 -0.4
2,602,291 + CCNA_02459 0.57 +0.0
2,602,296 + CCNA_02459 0.57 +0.7
2,602,299 - CCNA_02459 0.57 -1.3
2,602,338 + CCNA_02459 0.59 -0.2
2,602,340 + CCNA_02459 0.59 +0.2
2,602,340 + CCNA_02459 0.59 -0.1
2,602,345 + CCNA_02459 0.60 -3.3
2,602,345 + CCNA_02459 0.60 +2.5
2,602,348 - CCNA_02459 0.60 +1.0
2,602,355 + CCNA_02459 0.60 -1.7
2,602,445 + CCNA_02459 0.64 +0.8
2,602,535 - CCNA_02459 0.68 -2.7
2,602,535 - CCNA_02459 0.68 -0.3
2,602,535 - CCNA_02459 0.68 -1.3
2,602,535 - CCNA_02459 0.68 -1.4
2,602,573 - CCNA_02459 0.70 -0.3
2,602,601 - CCNA_02459 0.72 -2.0
2,602,601 - CCNA_02459 0.72 +0.0
2,602,643 - CCNA_02459 0.73 +0.5
2,602,656 + CCNA_02459 0.74 -0.7
2,602,709 - CCNA_02459 0.77 +0.2
2,602,709 - CCNA_02459 0.77 -0.5
2,602,744 + CCNA_02459 0.78 -0.4
2,602,767 + CCNA_02459 0.79 -1.1
2,602,767 + CCNA_02459 0.79 -0.5
2,602,767 + CCNA_02459 0.79 +0.3
2,602,775 - CCNA_02459 0.80 -2.4
2,602,791 + CCNA_02459 0.80 +0.2
2,602,831 + CCNA_02459 0.82 -0.6
2,602,831 + CCNA_02459 0.82 +0.4
2,602,839 - CCNA_02459 0.83 -0.3
2,602,848 - CCNA_02459 0.83 +0.0
2,602,860 - CCNA_02459 0.84 -0.5
2,602,905 - CCNA_02459 0.86 -0.9
2,602,922 - CCNA_02459 0.86 -0.2
2,602,922 - CCNA_02459 0.86 +0.1
2,602,922 - CCNA_02459 0.86 +1.8
2,602,928 - CCNA_02459 0.87 -1.1
2,602,956 - CCNA_02459 0.88 -0.6
2,602,956 - CCNA_02459 0.88 +0.5
2,603,024 - +0.6
2,603,026 + -0.5
2,603,062 + -1.0
2,603,070 - -1.6
2,603,091 + -0.1
2,603,091 + +0.6
2,603,195 + +0.3
2,603,203 - +0.8
2,603,205 + -0.1
2,603,205 + +0.2
2,603,205 + -1.6
2,603,213 - -0.6
2,603,213 - -0.5
2,603,279 - CCNA_02460 0.15 -0.1
2,603,309 - CCNA_02460 0.22 +0.4
2,603,341 + CCNA_02460 0.29 -0.6
2,603,343 + CCNA_02460 0.29 -0.5
2,603,372 - CCNA_02460 0.35 +0.4
2,603,393 + CCNA_02460 0.40 -1.4
2,603,401 - CCNA_02460 0.42 -0.1
2,603,401 - CCNA_02460 0.42 +0.0
2,603,401 - CCNA_02460 0.42 +0.4
2,603,419 + CCNA_02460 0.46 +1.8
2,603,421 + CCNA_02460 0.46 -0.7
2,603,424 - CCNA_02460 0.47 +0.2
2,603,424 - CCNA_02460 0.47 +0.1
2,603,440 - CCNA_02460 0.50 +0.5
2,603,471 + CCNA_02460 0.57 +1.3
2,603,478 + CCNA_02460 0.58 +0.7
2,603,479 + CCNA_02460 0.59 -0.7
2,603,479 - CCNA_02460 0.59 -0.0
2,603,487 - CCNA_02460 0.60 +0.3
2,603,489 + CCNA_02460 0.61 -0.2
2,603,503 + CCNA_02460 0.64 +0.2
2,603,539 - CCNA_02460 0.72 +1.0
2,603,548 - CCNA_02460 0.74 +0.0
2,603,548 - CCNA_02460 0.74 -0.3
2,603,549 + CCNA_02460 0.74 -1.6
2,603,549 + CCNA_02460 0.74 +0.9
2,603,577 + CCNA_02460 0.80 +0.4
2,603,577 - CCNA_02460 0.80 +0.4
2,603,577 - CCNA_02460 0.80 +1.2
2,603,599 + CCNA_02460 0.85 +0.4
2,603,605 + CCNA_02460 0.86 -0.6
2,603,616 + CCNA_02460 0.88 -0.7
2,603,623 + -1.0
2,603,657 - +0.1
2,603,665 + -1.8
2,603,675 + -1.3
2,603,683 - +0.0
2,603,683 - +0.5
2,603,717 - +0.1
2,603,742 + -0.3
2,603,747 + -1.6
2,603,769 + CCNA_02461 0.14 -0.2
2,603,790 - CCNA_02461 0.18 +0.3
2,603,812 - CCNA_02461 0.23 +0.5
2,603,832 - CCNA_02461 0.27 -0.7
2,603,856 + CCNA_02461 0.32 -0.3
2,603,856 + CCNA_02461 0.32 -0.3
2,603,935 + CCNA_02461 0.49 -1.2
2,603,940 + CCNA_02461 0.50 +1.4
2,603,940 + CCNA_02461 0.50 -0.7
2,603,948 - CCNA_02461 0.52 -0.5
2,603,948 - CCNA_02461 0.52 +0.3
2,603,948 - CCNA_02461 0.52 +0.1
2,603,988 - CCNA_02461 0.61 -0.3
2,604,002 - CCNA_02461 0.64 +0.1
2,604,045 - CCNA_02461 0.73 +0.2
2,604,058 - CCNA_02461 0.76 -0.3
2,604,114 + CCNA_02461 0.88 +0.3
2,604,185 + +0.0
2,604,185 + +0.8
2,604,244 + -0.6
2,604,287 + -0.3
2,604,364 + +0.4
2,604,364 + -0.2
2,604,372 - -1.3
2,604,393 + CCNA_02462 0.12 +0.8
2,604,409 - CCNA_02462 0.17 -1.8
2,604,422 - CCNA_02462 0.21 +0.4
2,604,444 - CCNA_02462 0.28 -0.3
2,604,518 - CCNA_02462 0.52 -0.6
2,604,518 - CCNA_02462 0.52 +0.3
2,604,548 + CCNA_02462 0.61 -0.3
2,604,566 + CCNA_02462 0.67 +0.8
2,604,566 - CCNA_02462 0.67 +0.4
2,604,572 + CCNA_02462 0.69 -0.2
2,604,633 - CCNA_02462 0.88 -1.5
2,604,665 + -0.0

Or see this region's nucleotide sequence