Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02390

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02389 and CCNA_02390 are separated by 69 nucleotidesCCNA_02390 and CCNA_R0056 are separated by 47 nucleotidesCCNA_R0056 and CCNA_02391 are separated by 190 nucleotides CCNA_02389: CCNA_02389 - glucosamine-1-phosphate acetyltransferase/UDP-N-acetylglucosamine pyrophosphorylase, at 2,532,845 to 2,534,233 _02389 CCNA_02390: CCNA_02390 - phosphoglycolate phosphatase, at 2,534,303 to 2,535,016 _02390 CCNA_R0056: CCNA_R0056 - tRNA-Val, at 2,535,064 to 2,535,138 _R0056 CCNA_02391: CCNA_02391 - oxidoreductase, at 2,535,329 to 2,536,108 _02391 Position (kb) 2534 2535 2536Strain fitness (log2 ratio) -2 -1 0 1 2at 2534.211 kb on + strandat 2534.247 kb on + strandat 2534.247 kb on + strandat 2534.255 kb on - strandat 2534.266 kb on - strandat 2534.310 kb on + strandat 2534.485 kb on - strand, within CCNA_02390at 2534.593 kb on + strand, within CCNA_02390at 2534.637 kb on + strand, within CCNA_02390at 2534.637 kb on + strand, within CCNA_02390at 2534.643 kb on + strand, within CCNA_02390at 2534.645 kb on + strand, within CCNA_02390at 2534.650 kb on + strand, within CCNA_02390at 2534.651 kb on - strand, within CCNA_02390at 2534.689 kb on + strand, within CCNA_02390at 2534.774 kb on + strand, within CCNA_02390at 2534.833 kb on - strand, within CCNA_02390at 2534.879 kb on + strand, within CCNA_02390at 2534.901 kb on + strand, within CCNA_02390at 2534.958 kb on + strandat 2534.958 kb on + strandat 2534.958 kb on + strandat 2534.958 kb on + strandat 2534.958 kb on + strandat 2534.965 kb on + strandat 2534.966 kb on - strandat 2534.966 kb on - strandat 2534.966 kb on - strandat 2534.966 kb on - strandat 2534.966 kb on - strandat 2534.967 kb on - strandat 2535.161 kb on + strandat 2535.169 kb on - strandat 2535.214 kb on + strandat 2535.214 kb on + strandat 2535.222 kb on - strandat 2535.222 kb on - strandat 2535.222 kb on - strandat 2535.323 kb on + strandat 2535.331 kb on - strandat 2535.335 kb on - strandat 2535.353 kb on + strandat 2535.361 kb on + strandat 2535.364 kb on - strandat 2535.371 kb on + strandat 2535.453 kb on - strand, within CCNA_02391at 2535.453 kb on - strand, within CCNA_02391at 2535.453 kb on - strand, within CCNA_02391at 2535.484 kb on + strand, within CCNA_02391at 2535.484 kb on + strand, within CCNA_02391at 2535.492 kb on - strand, within CCNA_02391at 2535.568 kb on + strand, within CCNA_02391at 2535.568 kb on + strand, within CCNA_02391at 2535.570 kb on + strand, within CCNA_02391at 2535.578 kb on - strand, within CCNA_02391at 2535.615 kb on + strand, within CCNA_02391at 2535.625 kb on + strand, within CCNA_02391at 2535.637 kb on + strand, within CCNA_02391at 2535.637 kb on + strand, within CCNA_02391at 2535.708 kb on + strand, within CCNA_02391at 2535.713 kb on + strand, within CCNA_02391at 2535.713 kb on + strand, within CCNA_02391at 2535.716 kb on - strand, within CCNA_02391at 2535.726 kb on - strand, within CCNA_02391at 2535.742 kb on + strand, within CCNA_02391at 2535.764 kb on + strand, within CCNA_02391at 2535.791 kb on - strand, within CCNA_02391at 2535.862 kb on - strand, within CCNA_02391at 2535.869 kb on - strand, within CCNA_02391at 2535.870 kb on + strand, within CCNA_02391at 2535.893 kb on + strand, within CCNA_02391at 2535.932 kb on - strand, within CCNA_02391at 2535.933 kb on - strand, within CCNA_02391at 2535.950 kb on + strand, within CCNA_02391at 2535.950 kb on + strand, within CCNA_02391at 2535.959 kb on + strand, within CCNA_02391at 2535.963 kb on - strand, within CCNA_02391at 2535.978 kb on - strand, within CCNA_02391at 2535.996 kb on + strand, within CCNA_02391at 2536.011 kb on - strand, within CCNA_02391

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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2,534,211 + -0.7
2,534,247 + +0.4
2,534,247 + +0.2
2,534,255 - -0.4
2,534,266 - +0.3
2,534,310 + +0.8
2,534,485 - CCNA_02390 0.25 +0.0
2,534,593 + CCNA_02390 0.41 -1.5
2,534,637 + CCNA_02390 0.47 +0.4
2,534,637 + CCNA_02390 0.47 -1.0
2,534,643 + CCNA_02390 0.48 -0.2
2,534,645 + CCNA_02390 0.48 +0.8
2,534,650 + CCNA_02390 0.49 +1.8
2,534,651 - CCNA_02390 0.49 +0.5
2,534,689 + CCNA_02390 0.54 +1.2
2,534,774 + CCNA_02390 0.66 +0.0
2,534,833 - CCNA_02390 0.74 -1.4
2,534,879 + CCNA_02390 0.81 -1.4
2,534,901 + CCNA_02390 0.84 +0.2
2,534,958 + +0.6
2,534,958 + +0.5
2,534,958 + -0.4
2,534,958 + +0.3
2,534,958 + +0.6
2,534,965 + +0.8
2,534,966 - -0.2
2,534,966 - +0.2
2,534,966 - -0.3
2,534,966 - -0.5
2,534,966 - +0.9
2,534,967 - +0.2
2,535,161 + +0.4
2,535,169 - -1.0
2,535,214 + -0.4
2,535,214 + +0.4
2,535,222 - +0.6
2,535,222 - -0.3
2,535,222 - -0.5
2,535,323 + -0.1
2,535,331 - +0.0
2,535,335 - -0.4
2,535,353 + -0.1
2,535,361 + +0.4
2,535,364 - -0.2
2,535,371 + +0.5
2,535,453 - CCNA_02391 0.16 +0.0
2,535,453 - CCNA_02391 0.16 +0.1
2,535,453 - CCNA_02391 0.16 -1.4
2,535,484 + CCNA_02391 0.20 -1.2
2,535,484 + CCNA_02391 0.20 +2.0
2,535,492 - CCNA_02391 0.21 +1.8
2,535,568 + CCNA_02391 0.31 -0.6
2,535,568 + CCNA_02391 0.31 +0.0
2,535,570 + CCNA_02391 0.31 +0.2
2,535,578 - CCNA_02391 0.32 +0.1
2,535,615 + CCNA_02391 0.37 -1.5
2,535,625 + CCNA_02391 0.38 +0.9
2,535,637 + CCNA_02391 0.39 +2.0
2,535,637 + CCNA_02391 0.39 +0.7
2,535,708 + CCNA_02391 0.49 -0.9
2,535,713 + CCNA_02391 0.49 -1.8
2,535,713 + CCNA_02391 0.49 +0.8
2,535,716 - CCNA_02391 0.50 +0.2
2,535,726 - CCNA_02391 0.51 -0.5
2,535,742 + CCNA_02391 0.53 -0.5
2,535,764 + CCNA_02391 0.56 -0.3
2,535,791 - CCNA_02391 0.59 -0.6
2,535,862 - CCNA_02391 0.68 -1.2
2,535,869 - CCNA_02391 0.69 +1.1
2,535,870 + CCNA_02391 0.69 +1.2
2,535,893 + CCNA_02391 0.72 -0.5
2,535,932 - CCNA_02391 0.77 +0.8
2,535,933 - CCNA_02391 0.77 +1.5
2,535,950 + CCNA_02391 0.80 -1.0
2,535,950 + CCNA_02391 0.80 -0.6
2,535,959 + CCNA_02391 0.81 +0.3
2,535,963 - CCNA_02391 0.81 -1.5
2,535,978 - CCNA_02391 0.83 -0.1
2,535,996 + CCNA_02391 0.86 +0.6
2,536,011 - CCNA_02391 0.87 -0.5

Or see this region's nucleotide sequence