Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02389 and CCNA_02390 are separated by 69 nucleotides CCNA_02390 and CCNA_R0056 are separated by 47 nucleotides CCNA_R0056 and CCNA_02391 are separated by 190 nucleotides
CCNA_02389: CCNA_02389 - glucosamine-1-phosphate acetyltransferase/UDP-N-acetylglucosamine pyrophosphorylase, at 2,532,845 to 2,534,233
_02389
CCNA_02390: CCNA_02390 - phosphoglycolate phosphatase, at 2,534,303 to 2,535,016
_02390
CCNA_R0056: CCNA_R0056 - tRNA-Val, at 2,535,064 to 2,535,138
_R0056
CCNA_02391: CCNA_02391 - oxidoreductase, at 2,535,329 to 2,536,108
_02391
Position (kb)
2534
2535
2536 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2534.211 kb on + strand at 2534.247 kb on + strand at 2534.247 kb on + strand at 2534.255 kb on - strand at 2534.266 kb on - strand at 2534.310 kb on + strand at 2534.485 kb on - strand, within CCNA_02390 at 2534.593 kb on + strand, within CCNA_02390 at 2534.637 kb on + strand, within CCNA_02390 at 2534.637 kb on + strand, within CCNA_02390 at 2534.643 kb on + strand, within CCNA_02390 at 2534.645 kb on + strand, within CCNA_02390 at 2534.650 kb on + strand, within CCNA_02390 at 2534.651 kb on - strand, within CCNA_02390 at 2534.689 kb on + strand, within CCNA_02390 at 2534.774 kb on + strand, within CCNA_02390 at 2534.833 kb on - strand, within CCNA_02390 at 2534.879 kb on + strand, within CCNA_02390 at 2534.901 kb on + strand, within CCNA_02390 at 2534.958 kb on + strand at 2534.958 kb on + strand at 2534.958 kb on + strand at 2534.958 kb on + strand at 2534.958 kb on + strand at 2534.965 kb on + strand at 2534.966 kb on - strand at 2534.966 kb on - strand at 2534.966 kb on - strand at 2534.966 kb on - strand at 2534.966 kb on - strand at 2534.967 kb on - strand at 2535.161 kb on + strand at 2535.169 kb on - strand at 2535.214 kb on + strand at 2535.214 kb on + strand at 2535.222 kb on - strand at 2535.222 kb on - strand at 2535.222 kb on - strand at 2535.323 kb on + strand at 2535.331 kb on - strand at 2535.335 kb on - strand at 2535.353 kb on + strand at 2535.361 kb on + strand at 2535.364 kb on - strand at 2535.371 kb on + strand at 2535.453 kb on - strand, within CCNA_02391 at 2535.453 kb on - strand, within CCNA_02391 at 2535.453 kb on - strand, within CCNA_02391 at 2535.484 kb on + strand, within CCNA_02391 at 2535.484 kb on + strand, within CCNA_02391 at 2535.492 kb on - strand, within CCNA_02391 at 2535.568 kb on + strand, within CCNA_02391 at 2535.568 kb on + strand, within CCNA_02391 at 2535.570 kb on + strand, within CCNA_02391 at 2535.578 kb on - strand, within CCNA_02391 at 2535.615 kb on + strand, within CCNA_02391 at 2535.625 kb on + strand, within CCNA_02391 at 2535.637 kb on + strand, within CCNA_02391 at 2535.637 kb on + strand, within CCNA_02391 at 2535.708 kb on + strand, within CCNA_02391 at 2535.713 kb on + strand, within CCNA_02391 at 2535.713 kb on + strand, within CCNA_02391 at 2535.716 kb on - strand, within CCNA_02391 at 2535.726 kb on - strand, within CCNA_02391 at 2535.742 kb on + strand, within CCNA_02391 at 2535.764 kb on + strand, within CCNA_02391 at 2535.791 kb on - strand, within CCNA_02391 at 2535.862 kb on - strand, within CCNA_02391 at 2535.869 kb on - strand, within CCNA_02391 at 2535.870 kb on + strand, within CCNA_02391 at 2535.893 kb on + strand, within CCNA_02391 at 2535.932 kb on - strand, within CCNA_02391 at 2535.933 kb on - strand, within CCNA_02391 at 2535.950 kb on + strand, within CCNA_02391 at 2535.950 kb on + strand, within CCNA_02391 at 2535.959 kb on + strand, within CCNA_02391 at 2535.963 kb on - strand, within CCNA_02391 at 2535.978 kb on - strand, within CCNA_02391 at 2535.996 kb on + strand, within CCNA_02391 at 2536.011 kb on - strand, within CCNA_02391
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 2,534,211 + -0.7 2,534,247 + +0.4 2,534,247 + +0.2 2,534,255 - -0.4 2,534,266 - +0.3 2,534,310 + +0.8 2,534,485 - CCNA_02390 0.25 +0.0 2,534,593 + CCNA_02390 0.41 -1.5 2,534,637 + CCNA_02390 0.47 +0.4 2,534,637 + CCNA_02390 0.47 -1.0 2,534,643 + CCNA_02390 0.48 -0.2 2,534,645 + CCNA_02390 0.48 +0.8 2,534,650 + CCNA_02390 0.49 +1.8 2,534,651 - CCNA_02390 0.49 +0.5 2,534,689 + CCNA_02390 0.54 +1.2 2,534,774 + CCNA_02390 0.66 +0.0 2,534,833 - CCNA_02390 0.74 -1.4 2,534,879 + CCNA_02390 0.81 -1.4 2,534,901 + CCNA_02390 0.84 +0.2 2,534,958 + +0.6 2,534,958 + +0.5 2,534,958 + -0.4 2,534,958 + +0.3 2,534,958 + +0.6 2,534,965 + +0.8 2,534,966 - -0.2 2,534,966 - +0.2 2,534,966 - -0.3 2,534,966 - -0.5 2,534,966 - +0.9 2,534,967 - +0.2 2,535,161 + +0.4 2,535,169 - -1.0 2,535,214 + -0.4 2,535,214 + +0.4 2,535,222 - +0.6 2,535,222 - -0.3 2,535,222 - -0.5 2,535,323 + -0.1 2,535,331 - +0.0 2,535,335 - -0.4 2,535,353 + -0.1 2,535,361 + +0.4 2,535,364 - -0.2 2,535,371 + +0.5 2,535,453 - CCNA_02391 0.16 +0.0 2,535,453 - CCNA_02391 0.16 +0.1 2,535,453 - CCNA_02391 0.16 -1.4 2,535,484 + CCNA_02391 0.20 -1.2 2,535,484 + CCNA_02391 0.20 +2.0 2,535,492 - CCNA_02391 0.21 +1.8 2,535,568 + CCNA_02391 0.31 -0.6 2,535,568 + CCNA_02391 0.31 +0.0 2,535,570 + CCNA_02391 0.31 +0.2 2,535,578 - CCNA_02391 0.32 +0.1 2,535,615 + CCNA_02391 0.37 -1.5 2,535,625 + CCNA_02391 0.38 +0.9 2,535,637 + CCNA_02391 0.39 +2.0 2,535,637 + CCNA_02391 0.39 +0.7 2,535,708 + CCNA_02391 0.49 -0.9 2,535,713 + CCNA_02391 0.49 -1.8 2,535,713 + CCNA_02391 0.49 +0.8 2,535,716 - CCNA_02391 0.50 +0.2 2,535,726 - CCNA_02391 0.51 -0.5 2,535,742 + CCNA_02391 0.53 -0.5 2,535,764 + CCNA_02391 0.56 -0.3 2,535,791 - CCNA_02391 0.59 -0.6 2,535,862 - CCNA_02391 0.68 -1.2 2,535,869 - CCNA_02391 0.69 +1.1 2,535,870 + CCNA_02391 0.69 +1.2 2,535,893 + CCNA_02391 0.72 -0.5 2,535,932 - CCNA_02391 0.77 +0.8 2,535,933 - CCNA_02391 0.77 +1.5 2,535,950 + CCNA_02391 0.80 -1.0 2,535,950 + CCNA_02391 0.80 -0.6 2,535,959 + CCNA_02391 0.81 +0.3 2,535,963 - CCNA_02391 0.81 -1.5 2,535,978 - CCNA_02391 0.83 -0.1 2,535,996 + CCNA_02391 0.86 +0.6 2,536,011 - CCNA_02391 0.87 -0.5
Or see this region's nucleotide sequence