Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02344 and CCNA_02345 are separated by 160 nucleotides CCNA_02345 and CCNA_02346 overlap by 4 nucleotides CCNA_02346 and CCNA_02347 are separated by 99 nucleotides
CCNA_02344: CCNA_02344 - phosphoglycerate mutase, at 2,484,136 to 2,484,849
_02344
CCNA_02345: CCNA_02345 - hypothetical protein, at 2,485,010 to 2,485,225
_02345
CCNA_02346: CCNA_02346 - arabinose-5-phosphate isomerase, at 2,485,222 to 2,486,178
_02346
CCNA_02347: CCNA_02347 - phosphomannomutase/phosphoglucomutase, at 2,486,278 to 2,487,774
_02347
Position (kb)
2485
2486
2487 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2484.313 kb on - strand, within CCNA_02344 at 2484.332 kb on + strand, within CCNA_02344 at 2484.426 kb on - strand, within CCNA_02344 at 2484.559 kb on + strand, within CCNA_02344 at 2484.631 kb on - strand, within CCNA_02344 at 2484.673 kb on + strand, within CCNA_02344 at 2484.768 kb on + strand, within CCNA_02344 at 2484.813 kb on + strand at 2484.886 kb on + strand at 2484.886 kb on + strand at 2484.886 kb on + strand at 2484.886 kb on + strand at 2484.894 kb on - strand at 2484.954 kb on - strand at 2484.955 kb on + strand at 2484.959 kb on + strand at 2484.967 kb on - strand at 2484.967 kb on - strand at 2484.985 kb on - strand at 2485.021 kb on - strand at 2485.061 kb on - strand, within CCNA_02345 at 2485.065 kb on - strand, within CCNA_02345 at 2485.069 kb on + strand, within CCNA_02345 at 2485.077 kb on - strand, within CCNA_02345 at 2485.094 kb on - strand, within CCNA_02345 at 2485.105 kb on + strand, within CCNA_02345 at 2485.117 kb on + strand, within CCNA_02345 at 2485.123 kb on - strand, within CCNA_02345 at 2485.135 kb on + strand, within CCNA_02345 at 2485.135 kb on + strand, within CCNA_02345 at 2485.168 kb on + strand, within CCNA_02345 at 2485.178 kb on - strand, within CCNA_02345 at 2485.207 kb on + strand at 2485.238 kb on - strand at 2485.240 kb on + strand at 2485.346 kb on - strand, within CCNA_02346 at 2485.369 kb on + strand, within CCNA_02346 at 2485.459 kb on - strand, within CCNA_02346 at 2485.512 kb on + strand, within CCNA_02346 at 2485.520 kb on - strand, within CCNA_02346 at 2485.631 kb on + strand, within CCNA_02346 at 2485.767 kb on + strand, within CCNA_02346 at 2485.782 kb on + strand, within CCNA_02346 at 2485.799 kb on + strand, within CCNA_02346 at 2485.824 kb on + strand, within CCNA_02346 at 2485.835 kb on + strand, within CCNA_02346 at 2485.857 kb on - strand, within CCNA_02346 at 2486.032 kb on + strand, within CCNA_02346 at 2486.040 kb on - strand, within CCNA_02346 at 2486.040 kb on - strand, within CCNA_02346 at 2486.040 kb on - strand, within CCNA_02346 at 2486.162 kb on + strand at 2486.172 kb on + strand at 2486.241 kb on + strand at 2486.241 kb on + strand at 2486.241 kb on + strand at 2486.245 kb on + strand at 2486.248 kb on - strand at 2486.248 kb on - strand at 2486.249 kb on - strand at 2486.249 kb on - strand at 2486.254 kb on - strand at 2486.281 kb on - strand at 2486.289 kb on + strand at 2486.335 kb on + strand at 2486.348 kb on - strand at 2486.394 kb on + strand at 2486.396 kb on + strand at 2486.417 kb on + strand at 2486.425 kb on - strand at 2486.493 kb on + strand, within CCNA_02347 at 2486.532 kb on + strand, within CCNA_02347 at 2486.535 kb on - strand, within CCNA_02347 at 2486.537 kb on + strand, within CCNA_02347 at 2486.540 kb on - strand, within CCNA_02347 at 2486.543 kb on + strand, within CCNA_02347 at 2486.558 kb on + strand, within CCNA_02347 at 2486.558 kb on + strand, within CCNA_02347 at 2486.559 kb on - strand, within CCNA_02347 at 2486.596 kb on - strand, within CCNA_02347 at 2486.628 kb on + strand, within CCNA_02347 at 2486.662 kb on + strand, within CCNA_02347 at 2486.718 kb on + strand, within CCNA_02347 at 2486.718 kb on + strand, within CCNA_02347 at 2486.726 kb on - strand, within CCNA_02347 at 2486.762 kb on + strand, within CCNA_02347 at 2486.784 kb on + strand, within CCNA_02347 at 2486.792 kb on - strand, within CCNA_02347 at 2486.889 kb on + strand, within CCNA_02347 at 2486.922 kb on + strand, within CCNA_02347 at 2486.972 kb on - strand, within CCNA_02347 at 2487.042 kb on - strand, within CCNA_02347 at 2487.146 kb on + strand, within CCNA_02347
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 2,484,313 - CCNA_02344 0.25 -0.2 2,484,332 + CCNA_02344 0.27 -0.0 2,484,426 - CCNA_02344 0.41 +0.2 2,484,559 + CCNA_02344 0.59 +0.8 2,484,631 - CCNA_02344 0.69 -0.5 2,484,673 + CCNA_02344 0.75 -0.9 2,484,768 + CCNA_02344 0.89 -0.0 2,484,813 + +0.8 2,484,886 + -0.4 2,484,886 + -0.3 2,484,886 + +0.7 2,484,886 + -0.4 2,484,894 - -0.2 2,484,954 - -1.0 2,484,955 + +0.8 2,484,959 + -0.3 2,484,967 - -0.5 2,484,967 - -0.7 2,484,985 - -1.1 2,485,021 - -0.0 2,485,061 - CCNA_02345 0.24 +0.5 2,485,065 - CCNA_02345 0.25 -0.3 2,485,069 + CCNA_02345 0.27 -0.1 2,485,077 - CCNA_02345 0.31 -1.2 2,485,094 - CCNA_02345 0.39 -0.5 2,485,105 + CCNA_02345 0.44 +2.0 2,485,117 + CCNA_02345 0.50 +0.1 2,485,123 - CCNA_02345 0.52 -0.5 2,485,135 + CCNA_02345 0.58 -0.4 2,485,135 + CCNA_02345 0.58 -0.6 2,485,168 + CCNA_02345 0.73 +0.7 2,485,178 - CCNA_02345 0.78 -0.3 2,485,207 + +0.5 2,485,238 - -0.0 2,485,240 + -0.0 2,485,346 - CCNA_02346 0.13 -0.1 2,485,369 + CCNA_02346 0.15 +0.5 2,485,459 - CCNA_02346 0.25 +0.5 2,485,512 + CCNA_02346 0.30 +0.7 2,485,520 - CCNA_02346 0.31 -1.4 2,485,631 + CCNA_02346 0.43 -0.9 2,485,767 + CCNA_02346 0.57 -1.0 2,485,782 + CCNA_02346 0.59 +0.6 2,485,799 + CCNA_02346 0.60 -0.9 2,485,824 + CCNA_02346 0.63 +0.5 2,485,835 + CCNA_02346 0.64 -0.7 2,485,857 - CCNA_02346 0.66 -0.9 2,486,032 + CCNA_02346 0.85 -0.5 2,486,040 - CCNA_02346 0.85 -0.4 2,486,040 - CCNA_02346 0.85 -0.0 2,486,040 - CCNA_02346 0.85 -1.2 2,486,162 + +0.1 2,486,172 + +0.4 2,486,241 + +0.2 2,486,241 + +0.4 2,486,241 + -0.1 2,486,245 + +1.3 2,486,248 - -0.6 2,486,248 - +1.6 2,486,249 - -0.7 2,486,249 - -0.7 2,486,254 - +0.5 2,486,281 - -1.7 2,486,289 + -0.0 2,486,335 + -0.8 2,486,348 - -0.8 2,486,394 + +0.5 2,486,396 + +0.2 2,486,417 + -0.7 2,486,425 - -2.7 2,486,493 + CCNA_02347 0.14 -0.4 2,486,532 + CCNA_02347 0.17 +0.3 2,486,535 - CCNA_02347 0.17 -1.1 2,486,537 + CCNA_02347 0.17 +0.9 2,486,540 - CCNA_02347 0.18 -0.5 2,486,543 + CCNA_02347 0.18 -0.0 2,486,558 + CCNA_02347 0.19 -0.7 2,486,558 + CCNA_02347 0.19 -0.6 2,486,559 - CCNA_02347 0.19 +2.6 2,486,596 - CCNA_02347 0.21 -0.7 2,486,628 + CCNA_02347 0.23 +1.5 2,486,662 + CCNA_02347 0.26 +0.1 2,486,718 + CCNA_02347 0.29 +0.8 2,486,718 + CCNA_02347 0.29 -1.6 2,486,726 - CCNA_02347 0.30 -2.3 2,486,762 + CCNA_02347 0.32 -0.8 2,486,784 + CCNA_02347 0.34 -0.6 2,486,792 - CCNA_02347 0.34 -0.6 2,486,889 + CCNA_02347 0.41 -0.4 2,486,922 + CCNA_02347 0.43 +0.2 2,486,972 - CCNA_02347 0.46 -1.7 2,487,042 - CCNA_02347 0.51 -0.3 2,487,146 + CCNA_02347 0.58 -0.0
Or see this region's nucleotide sequence