Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02329

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_02328 and CCNA_02329 are separated by 275 nucleotidesCCNA_02329 and CCNA_02330 are separated by 27 nucleotidesCCNA_02330 and CCNA_02331 overlap by 16 nucleotides CCNA_02328: CCNA_02328 - cell cycle regulatory protein GcrA, at 2,470,434 to 2,470,955 _02328 CCNA_02329: CCNA_02329 - exodeoxyribonuclease VII large subunit, at 2,471,231 to 2,472,748 _02329 CCNA_02330: CCNA_02330 - hypothetical protein, at 2,472,776 to 2,472,991 _02330 CCNA_02331: CCNA_02331 - peptidoglycan-specific endopeptidase, M23 family, at 2,472,976 to 2,473,827 _02331 Position (kb) 2471 2472 2473Strain fitness (log2 ratio) -2 -1 0 1 2at 2470.372 kb on + strandat 2470.431 kb on + strandat 2470.896 kb on - strand, within CCNA_02328at 2470.898 kb on + strand, within CCNA_02328at 2470.928 kb on + strandat 2470.957 kb on - strandat 2470.979 kb on + strandat 2471.014 kb on + strandat 2471.033 kb on + strandat 2471.033 kb on + strandat 2471.033 kb on + strandat 2471.033 kb on + strandat 2471.033 kb on + strandat 2471.033 kb on + strandat 2471.041 kb on - strandat 2471.041 kb on - strandat 2471.049 kb on + strandat 2471.083 kb on + strandat 2471.087 kb on + strandat 2471.091 kb on - strandat 2471.148 kb on - strandat 2471.191 kb on - strandat 2471.198 kb on + strandat 2471.274 kb on - strandat 2471.375 kb on + strandat 2471.760 kb on + strand, within CCNA_02329at 2471.765 kb on + strand, within CCNA_02329at 2471.765 kb on + strand, within CCNA_02329at 2471.921 kb on + strand, within CCNA_02329at 2471.974 kb on - strand, within CCNA_02329at 2472.723 kb on + strandat 2472.736 kb on - strandat 2472.826 kb on + strand, within CCNA_02330at 2472.853 kb on + strand, within CCNA_02330at 2472.867 kb on + strand, within CCNA_02330at 2472.872 kb on + strand, within CCNA_02330at 2472.935 kb on - strand, within CCNA_02330at 2472.951 kb on - strand, within CCNA_02330at 2473.003 kb on + strandat 2473.011 kb on - strandat 2473.011 kb on - strandat 2473.030 kb on + strandat 2473.043 kb on - strandat 2473.113 kb on - strand, within CCNA_02331at 2473.127 kb on + strand, within CCNA_02331at 2473.145 kb on + strand, within CCNA_02331at 2473.227 kb on - strand, within CCNA_02331at 2473.315 kb on + strand, within CCNA_02331at 2473.339 kb on + strand, within CCNA_02331at 2473.467 kb on - strand, within CCNA_02331at 2473.514 kb on + strand, within CCNA_02331at 2473.514 kb on - strand, within CCNA_02331at 2473.588 kb on + strand, within CCNA_02331at 2473.601 kb on - strand, within CCNA_02331at 2473.627 kb on + strand, within CCNA_02331at 2473.633 kb on + strand, within CCNA_02331at 2473.635 kb on - strand, within CCNA_02331at 2473.641 kb on - strand, within CCNA_02331at 2473.714 kb on - strand, within CCNA_02331at 2473.747 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
remove
2,470,372 + +0.1
2,470,431 + +0.6
2,470,896 - CCNA_02328 0.89 -0.2
2,470,898 + CCNA_02328 0.89 -0.3
2,470,928 + +0.4
2,470,957 - +0.2
2,470,979 + +0.9
2,471,014 + -0.2
2,471,033 + -1.8
2,471,033 + +0.8
2,471,033 + +2.2
2,471,033 + +0.3
2,471,033 + -0.8
2,471,033 + +0.4
2,471,041 - +0.3
2,471,041 - -0.1
2,471,049 + +0.1
2,471,083 + -0.0
2,471,087 + -0.2
2,471,091 - +0.4
2,471,148 - +0.9
2,471,191 - -1.2
2,471,198 + -1.4
2,471,274 - -1.0
2,471,375 + +1.4
2,471,760 + CCNA_02329 0.35 -0.3
2,471,765 + CCNA_02329 0.35 +0.8
2,471,765 + CCNA_02329 0.35 +0.4
2,471,921 + CCNA_02329 0.45 +1.0
2,471,974 - CCNA_02329 0.49 +0.4
2,472,723 + +0.3
2,472,736 - -0.4
2,472,826 + CCNA_02330 0.23 +0.8
2,472,853 + CCNA_02330 0.36 +0.7
2,472,867 + CCNA_02330 0.42 +0.5
2,472,872 + CCNA_02330 0.44 +0.0
2,472,935 - CCNA_02330 0.74 -0.0
2,472,951 - CCNA_02330 0.81 -0.6
2,473,003 + +1.1
2,473,011 - -0.3
2,473,011 - -0.4
2,473,030 + +0.3
2,473,043 - -0.3
2,473,113 - CCNA_02331 0.16 -0.8
2,473,127 + CCNA_02331 0.18 -0.5
2,473,145 + CCNA_02331 0.20 +0.2
2,473,227 - CCNA_02331 0.29 -0.1
2,473,315 + CCNA_02331 0.40 +0.7
2,473,339 + CCNA_02331 0.43 +0.4
2,473,467 - CCNA_02331 0.58 +0.3
2,473,514 + CCNA_02331 0.63 +0.4
2,473,514 - CCNA_02331 0.63 +1.2
2,473,588 + CCNA_02331 0.72 +0.5
2,473,601 - CCNA_02331 0.73 +0.2
2,473,627 + CCNA_02331 0.76 -0.3
2,473,633 + CCNA_02331 0.77 +1.0
2,473,635 - CCNA_02331 0.77 -0.1
2,473,641 - CCNA_02331 0.78 +0.0
2,473,714 - CCNA_02331 0.87 -0.6
2,473,747 + +0.2

Or see this region's nucleotide sequence