Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02314 and CCNA_02315 are separated by 27 nucleotides CCNA_02315 and CCNA_02316 overlap by 4 nucleotides CCNA_02316 and CCNA_02317 overlap by 91 nucleotides CCNA_02317 and CCNA_02318 are separated by 28 nucleotides CCNA_02318 and CCNA_02319 are separated by 116 nucleotides
CCNA_02314: CCNA_02314 - hypothetical protein, at 2,459,534 to 2,460,208
_02314
CCNA_02315: CCNA_02315 - Cro/CI-family transcriptional regulator, at 2,460,236 to 2,460,430
_02315
CCNA_02316: CCNA_02316 - hypothetical protein, at 2,460,427 to 2,460,942
_02316
CCNA_02317: CCNA_02317 - hypothetical protein, at 2,460,852 to 2,461,289
_02317
CCNA_02318: CCNA_02318 - hypothetical protein, at 2,461,318 to 2,461,581
_02318
CCNA_02319: CCNA_02319 - hypothetical protein, at 2,461,698 to 2,462,216
_02319
Position (kb)
2460
2461
2462 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2459.855 kb on - strand, within CCNA_02314 at 2459.887 kb on + strand, within CCNA_02314 at 2459.890 kb on - strand, within CCNA_02314 at 2459.962 kb on - strand, within CCNA_02314 at 2459.987 kb on + strand, within CCNA_02314 at 2459.987 kb on + strand, within CCNA_02314 at 2460.059 kb on - strand, within CCNA_02314 at 2460.059 kb on - strand, within CCNA_02314 at 2460.098 kb on + strand, within CCNA_02314 at 2460.155 kb on + strand at 2460.156 kb on + strand at 2460.181 kb on + strand at 2460.199 kb on - strand at 2460.216 kb on + strand at 2460.315 kb on - strand, within CCNA_02315 at 2460.420 kb on - strand at 2460.430 kb on + strand at 2460.443 kb on - strand at 2460.470 kb on - strand at 2460.473 kb on + strand at 2460.481 kb on - strand, within CCNA_02316 at 2460.517 kb on - strand, within CCNA_02316 at 2460.524 kb on - strand, within CCNA_02316 at 2460.559 kb on - strand, within CCNA_02316 at 2460.569 kb on - strand, within CCNA_02316 at 2460.569 kb on - strand, within CCNA_02316 at 2460.569 kb on - strand, within CCNA_02316 at 2460.583 kb on - strand, within CCNA_02316 at 2460.594 kb on - strand, within CCNA_02316 at 2460.640 kb on - strand, within CCNA_02316 at 2460.721 kb on - strand, within CCNA_02316 at 2460.721 kb on - strand, within CCNA_02316 at 2460.738 kb on - strand, within CCNA_02316 at 2460.738 kb on - strand, within CCNA_02316 at 2460.743 kb on - strand, within CCNA_02316 at 2460.743 kb on - strand, within CCNA_02316 at 2460.743 kb on - strand, within CCNA_02316 at 2460.743 kb on - strand, within CCNA_02316 at 2460.743 kb on - strand, within CCNA_02316 at 2460.743 kb on - strand, within CCNA_02316 at 2460.743 kb on - strand, within CCNA_02316 at 2460.743 kb on - strand, within CCNA_02316 at 2460.766 kb on - strand, within CCNA_02316 at 2460.782 kb on + strand, within CCNA_02316 at 2460.782 kb on + strand, within CCNA_02316 at 2460.782 kb on + strand, within CCNA_02316 at 2460.825 kb on - strand, within CCNA_02316 at 2460.836 kb on - strand, within CCNA_02316 at 2460.850 kb on + strand, within CCNA_02316 at 2460.857 kb on - strand at 2460.880 kb on - strand at 2460.895 kb on + strand at 2460.910 kb on - strand at 2460.939 kb on + strand at 2460.949 kb on + strand, within CCNA_02317 at 2460.957 kb on - strand, within CCNA_02317 at 2460.957 kb on - strand, within CCNA_02317 at 2460.957 kb on - strand, within CCNA_02317 at 2460.958 kb on + strand, within CCNA_02317 at 2460.993 kb on - strand, within CCNA_02317 at 2461.025 kb on + strand, within CCNA_02317 at 2461.044 kb on - strand, within CCNA_02317 at 2461.244 kb on + strand, within CCNA_02317 at 2461.276 kb on - strand at 2461.291 kb on + strand at 2461.325 kb on - strand at 2461.348 kb on + strand, within CCNA_02318 at 2461.413 kb on + strand, within CCNA_02318 at 2461.463 kb on + strand, within CCNA_02318 at 2461.695 kb on + strand at 2461.782 kb on + strand, within CCNA_02319 at 2461.797 kb on + strand, within CCNA_02319 at 2461.797 kb on + strand, within CCNA_02319 at 2461.797 kb on + strand, within CCNA_02319 at 2461.805 kb on - strand, within CCNA_02319 at 2461.821 kb on + strand, within CCNA_02319 at 2461.836 kb on + strand, within CCNA_02319 at 2461.837 kb on - strand, within CCNA_02319 at 2461.884 kb on + strand, within CCNA_02319 at 2461.942 kb on + strand, within CCNA_02319 at 2461.955 kb on - strand, within CCNA_02319 at 2461.956 kb on - strand, within CCNA_02319 at 2462.008 kb on - strand, within CCNA_02319 at 2462.010 kb on + strand, within CCNA_02319 at 2462.020 kb on - strand, within CCNA_02319 at 2462.037 kb on - strand, within CCNA_02319 at 2462.039 kb on + strand, within CCNA_02319 at 2462.039 kb on + strand, within CCNA_02319 at 2462.044 kb on + strand, within CCNA_02319 at 2462.044 kb on + strand, within CCNA_02319 at 2462.044 kb on + strand, within CCNA_02319 at 2462.047 kb on - strand, within CCNA_02319 at 2462.047 kb on - strand, within CCNA_02319 at 2462.052 kb on - strand, within CCNA_02319 at 2462.052 kb on - strand, within CCNA_02319 at 2462.052 kb on - strand, within CCNA_02319 at 2462.281 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 2,459,855 - CCNA_02314 0.48 -0.2 2,459,887 + CCNA_02314 0.52 -0.4 2,459,890 - CCNA_02314 0.53 -0.4 2,459,962 - CCNA_02314 0.63 -0.2 2,459,987 + CCNA_02314 0.67 +0.5 2,459,987 + CCNA_02314 0.67 -0.1 2,460,059 - CCNA_02314 0.78 +0.5 2,460,059 - CCNA_02314 0.78 -0.1 2,460,098 + CCNA_02314 0.84 -1.3 2,460,155 + -0.8 2,460,156 + -1.2 2,460,181 + +0.8 2,460,199 - +0.1 2,460,216 + -0.8 2,460,315 - CCNA_02315 0.41 +0.2 2,460,420 - -0.3 2,460,430 + -0.6 2,460,443 - +1.8 2,460,470 - -1.7 2,460,473 + -0.9 2,460,481 - CCNA_02316 0.10 +0.5 2,460,517 - CCNA_02316 0.17 +0.1 2,460,524 - CCNA_02316 0.19 +0.7 2,460,559 - CCNA_02316 0.26 +0.1 2,460,569 - CCNA_02316 0.28 +0.5 2,460,569 - CCNA_02316 0.28 +0.2 2,460,569 - CCNA_02316 0.28 +0.6 2,460,583 - CCNA_02316 0.30 +0.5 2,460,594 - CCNA_02316 0.32 +0.5 2,460,640 - CCNA_02316 0.41 +0.4 2,460,721 - CCNA_02316 0.57 -0.3 2,460,721 - CCNA_02316 0.57 +0.6 2,460,738 - CCNA_02316 0.60 +0.3 2,460,738 - CCNA_02316 0.60 +0.5 2,460,743 - CCNA_02316 0.61 +0.1 2,460,743 - CCNA_02316 0.61 +1.2 2,460,743 - CCNA_02316 0.61 +0.2 2,460,743 - CCNA_02316 0.61 +0.7 2,460,743 - CCNA_02316 0.61 +0.4 2,460,743 - CCNA_02316 0.61 -0.0 2,460,743 - CCNA_02316 0.61 +0.5 2,460,743 - CCNA_02316 0.61 -0.8 2,460,766 - CCNA_02316 0.66 +0.7 2,460,782 + CCNA_02316 0.69 +0.0 2,460,782 + CCNA_02316 0.69 -0.4 2,460,782 + CCNA_02316 0.69 -1.1 2,460,825 - CCNA_02316 0.77 -0.5 2,460,836 - CCNA_02316 0.79 +0.5 2,460,850 + CCNA_02316 0.82 -0.4 2,460,857 - -1.0 2,460,880 - +0.2 2,460,895 + +0.3 2,460,910 - +0.2 2,460,939 + +0.0 2,460,949 + CCNA_02317 0.22 +0.8 2,460,957 - CCNA_02317 0.24 +0.3 2,460,957 - CCNA_02317 0.24 -0.5 2,460,957 - CCNA_02317 0.24 +0.4 2,460,958 + CCNA_02317 0.24 +2.3 2,460,993 - CCNA_02317 0.32 -2.0 2,461,025 + CCNA_02317 0.39 -1.0 2,461,044 - CCNA_02317 0.44 -1.8 2,461,244 + CCNA_02317 0.89 -0.8 2,461,276 - -0.1 2,461,291 + -0.9 2,461,325 - -0.2 2,461,348 + CCNA_02318 0.11 +1.6 2,461,413 + CCNA_02318 0.36 +0.7 2,461,463 + CCNA_02318 0.55 -0.8 2,461,695 + +0.2 2,461,782 + CCNA_02319 0.16 -0.2 2,461,797 + CCNA_02319 0.19 -0.6 2,461,797 + CCNA_02319 0.19 +0.4 2,461,797 + CCNA_02319 0.19 +0.0 2,461,805 - CCNA_02319 0.21 -0.9 2,461,821 + CCNA_02319 0.24 -0.0 2,461,836 + CCNA_02319 0.27 +0.1 2,461,837 - CCNA_02319 0.27 -1.4 2,461,884 + CCNA_02319 0.36 +1.8 2,461,942 + CCNA_02319 0.47 +0.2 2,461,955 - CCNA_02319 0.50 -0.2 2,461,956 - CCNA_02319 0.50 -0.5 2,462,008 - CCNA_02319 0.60 -0.9 2,462,010 + CCNA_02319 0.60 +0.3 2,462,020 - CCNA_02319 0.62 +0.5 2,462,037 - CCNA_02319 0.65 +0.2 2,462,039 + CCNA_02319 0.66 -0.5 2,462,039 + CCNA_02319 0.66 -0.1 2,462,044 + CCNA_02319 0.67 -0.5 2,462,044 + CCNA_02319 0.67 -1.6 2,462,044 + CCNA_02319 0.67 -1.2 2,462,047 - CCNA_02319 0.67 -0.1 2,462,047 - CCNA_02319 0.67 -0.7 2,462,052 - CCNA_02319 0.68 -0.1 2,462,052 - CCNA_02319 0.68 +0.0 2,462,052 - CCNA_02319 0.68 +0.5 2,462,281 + -0.2
Or see this region's nucleotide sequence