Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02317

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02314 and CCNA_02315 are separated by 27 nucleotidesCCNA_02315 and CCNA_02316 overlap by 4 nucleotidesCCNA_02316 and CCNA_02317 overlap by 91 nucleotidesCCNA_02317 and CCNA_02318 are separated by 28 nucleotidesCCNA_02318 and CCNA_02319 are separated by 116 nucleotides CCNA_02314: CCNA_02314 - hypothetical protein, at 2,459,534 to 2,460,208 _02314 CCNA_02315: CCNA_02315 - Cro/CI-family transcriptional regulator, at 2,460,236 to 2,460,430 _02315 CCNA_02316: CCNA_02316 - hypothetical protein, at 2,460,427 to 2,460,942 _02316 CCNA_02317: CCNA_02317 - hypothetical protein, at 2,460,852 to 2,461,289 _02317 CCNA_02318: CCNA_02318 - hypothetical protein, at 2,461,318 to 2,461,581 _02318 CCNA_02319: CCNA_02319 - hypothetical protein, at 2,461,698 to 2,462,216 _02319 Position (kb) 2460 2461 2462Strain fitness (log2 ratio) -2 -1 0 1 2at 2459.855 kb on - strand, within CCNA_02314at 2459.887 kb on + strand, within CCNA_02314at 2459.890 kb on - strand, within CCNA_02314at 2459.962 kb on - strand, within CCNA_02314at 2459.987 kb on + strand, within CCNA_02314at 2459.987 kb on + strand, within CCNA_02314at 2460.059 kb on - strand, within CCNA_02314at 2460.059 kb on - strand, within CCNA_02314at 2460.098 kb on + strand, within CCNA_02314at 2460.155 kb on + strandat 2460.156 kb on + strandat 2460.181 kb on + strandat 2460.199 kb on - strandat 2460.216 kb on + strandat 2460.315 kb on - strand, within CCNA_02315at 2460.420 kb on - strandat 2460.430 kb on + strandat 2460.443 kb on - strandat 2460.470 kb on - strandat 2460.473 kb on + strandat 2460.481 kb on - strand, within CCNA_02316at 2460.517 kb on - strand, within CCNA_02316at 2460.524 kb on - strand, within CCNA_02316at 2460.559 kb on - strand, within CCNA_02316at 2460.569 kb on - strand, within CCNA_02316at 2460.569 kb on - strand, within CCNA_02316at 2460.569 kb on - strand, within CCNA_02316at 2460.583 kb on - strand, within CCNA_02316at 2460.594 kb on - strand, within CCNA_02316at 2460.640 kb on - strand, within CCNA_02316at 2460.721 kb on - strand, within CCNA_02316at 2460.721 kb on - strand, within CCNA_02316at 2460.738 kb on - strand, within CCNA_02316at 2460.738 kb on - strand, within CCNA_02316at 2460.743 kb on - strand, within CCNA_02316at 2460.743 kb on - strand, within CCNA_02316at 2460.743 kb on - strand, within CCNA_02316at 2460.743 kb on - strand, within CCNA_02316at 2460.743 kb on - strand, within CCNA_02316at 2460.743 kb on - strand, within CCNA_02316at 2460.743 kb on - strand, within CCNA_02316at 2460.743 kb on - strand, within CCNA_02316at 2460.766 kb on - strand, within CCNA_02316at 2460.782 kb on + strand, within CCNA_02316at 2460.782 kb on + strand, within CCNA_02316at 2460.782 kb on + strand, within CCNA_02316at 2460.825 kb on - strand, within CCNA_02316at 2460.836 kb on - strand, within CCNA_02316at 2460.850 kb on + strand, within CCNA_02316at 2460.857 kb on - strandat 2460.880 kb on - strandat 2460.895 kb on + strandat 2460.910 kb on - strandat 2460.939 kb on + strandat 2460.949 kb on + strand, within CCNA_02317at 2460.957 kb on - strand, within CCNA_02317at 2460.957 kb on - strand, within CCNA_02317at 2460.957 kb on - strand, within CCNA_02317at 2460.958 kb on + strand, within CCNA_02317at 2460.993 kb on - strand, within CCNA_02317at 2461.025 kb on + strand, within CCNA_02317at 2461.044 kb on - strand, within CCNA_02317at 2461.244 kb on + strand, within CCNA_02317at 2461.276 kb on - strandat 2461.291 kb on + strandat 2461.325 kb on - strandat 2461.348 kb on + strand, within CCNA_02318at 2461.413 kb on + strand, within CCNA_02318at 2461.463 kb on + strand, within CCNA_02318at 2461.695 kb on + strandat 2461.782 kb on + strand, within CCNA_02319at 2461.797 kb on + strand, within CCNA_02319at 2461.797 kb on + strand, within CCNA_02319at 2461.797 kb on + strand, within CCNA_02319at 2461.805 kb on - strand, within CCNA_02319at 2461.821 kb on + strand, within CCNA_02319at 2461.836 kb on + strand, within CCNA_02319at 2461.837 kb on - strand, within CCNA_02319at 2461.884 kb on + strand, within CCNA_02319at 2461.942 kb on + strand, within CCNA_02319at 2461.955 kb on - strand, within CCNA_02319at 2461.956 kb on - strand, within CCNA_02319at 2462.008 kb on - strand, within CCNA_02319at 2462.010 kb on + strand, within CCNA_02319at 2462.020 kb on - strand, within CCNA_02319at 2462.037 kb on - strand, within CCNA_02319at 2462.039 kb on + strand, within CCNA_02319at 2462.039 kb on + strand, within CCNA_02319at 2462.044 kb on + strand, within CCNA_02319at 2462.044 kb on + strand, within CCNA_02319at 2462.044 kb on + strand, within CCNA_02319at 2462.047 kb on - strand, within CCNA_02319at 2462.047 kb on - strand, within CCNA_02319at 2462.052 kb on - strand, within CCNA_02319at 2462.052 kb on - strand, within CCNA_02319at 2462.052 kb on - strand, within CCNA_02319at 2462.281 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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2,459,855 - CCNA_02314 0.48 -0.2
2,459,887 + CCNA_02314 0.52 -0.4
2,459,890 - CCNA_02314 0.53 -0.4
2,459,962 - CCNA_02314 0.63 -0.2
2,459,987 + CCNA_02314 0.67 +0.5
2,459,987 + CCNA_02314 0.67 -0.1
2,460,059 - CCNA_02314 0.78 +0.5
2,460,059 - CCNA_02314 0.78 -0.1
2,460,098 + CCNA_02314 0.84 -1.3
2,460,155 + -0.8
2,460,156 + -1.2
2,460,181 + +0.8
2,460,199 - +0.1
2,460,216 + -0.8
2,460,315 - CCNA_02315 0.41 +0.2
2,460,420 - -0.3
2,460,430 + -0.6
2,460,443 - +1.8
2,460,470 - -1.7
2,460,473 + -0.9
2,460,481 - CCNA_02316 0.10 +0.5
2,460,517 - CCNA_02316 0.17 +0.1
2,460,524 - CCNA_02316 0.19 +0.7
2,460,559 - CCNA_02316 0.26 +0.1
2,460,569 - CCNA_02316 0.28 +0.5
2,460,569 - CCNA_02316 0.28 +0.2
2,460,569 - CCNA_02316 0.28 +0.6
2,460,583 - CCNA_02316 0.30 +0.5
2,460,594 - CCNA_02316 0.32 +0.5
2,460,640 - CCNA_02316 0.41 +0.4
2,460,721 - CCNA_02316 0.57 -0.3
2,460,721 - CCNA_02316 0.57 +0.6
2,460,738 - CCNA_02316 0.60 +0.3
2,460,738 - CCNA_02316 0.60 +0.5
2,460,743 - CCNA_02316 0.61 +0.1
2,460,743 - CCNA_02316 0.61 +1.2
2,460,743 - CCNA_02316 0.61 +0.2
2,460,743 - CCNA_02316 0.61 +0.7
2,460,743 - CCNA_02316 0.61 +0.4
2,460,743 - CCNA_02316 0.61 -0.0
2,460,743 - CCNA_02316 0.61 +0.5
2,460,743 - CCNA_02316 0.61 -0.8
2,460,766 - CCNA_02316 0.66 +0.7
2,460,782 + CCNA_02316 0.69 +0.0
2,460,782 + CCNA_02316 0.69 -0.4
2,460,782 + CCNA_02316 0.69 -1.1
2,460,825 - CCNA_02316 0.77 -0.5
2,460,836 - CCNA_02316 0.79 +0.5
2,460,850 + CCNA_02316 0.82 -0.4
2,460,857 - -1.0
2,460,880 - +0.2
2,460,895 + +0.3
2,460,910 - +0.2
2,460,939 + +0.0
2,460,949 + CCNA_02317 0.22 +0.8
2,460,957 - CCNA_02317 0.24 +0.3
2,460,957 - CCNA_02317 0.24 -0.5
2,460,957 - CCNA_02317 0.24 +0.4
2,460,958 + CCNA_02317 0.24 +2.3
2,460,993 - CCNA_02317 0.32 -2.0
2,461,025 + CCNA_02317 0.39 -1.0
2,461,044 - CCNA_02317 0.44 -1.8
2,461,244 + CCNA_02317 0.89 -0.8
2,461,276 - -0.1
2,461,291 + -0.9
2,461,325 - -0.2
2,461,348 + CCNA_02318 0.11 +1.6
2,461,413 + CCNA_02318 0.36 +0.7
2,461,463 + CCNA_02318 0.55 -0.8
2,461,695 + +0.2
2,461,782 + CCNA_02319 0.16 -0.2
2,461,797 + CCNA_02319 0.19 -0.6
2,461,797 + CCNA_02319 0.19 +0.4
2,461,797 + CCNA_02319 0.19 +0.0
2,461,805 - CCNA_02319 0.21 -0.9
2,461,821 + CCNA_02319 0.24 -0.0
2,461,836 + CCNA_02319 0.27 +0.1
2,461,837 - CCNA_02319 0.27 -1.4
2,461,884 + CCNA_02319 0.36 +1.8
2,461,942 + CCNA_02319 0.47 +0.2
2,461,955 - CCNA_02319 0.50 -0.2
2,461,956 - CCNA_02319 0.50 -0.5
2,462,008 - CCNA_02319 0.60 -0.9
2,462,010 + CCNA_02319 0.60 +0.3
2,462,020 - CCNA_02319 0.62 +0.5
2,462,037 - CCNA_02319 0.65 +0.2
2,462,039 + CCNA_02319 0.66 -0.5
2,462,039 + CCNA_02319 0.66 -0.1
2,462,044 + CCNA_02319 0.67 -0.5
2,462,044 + CCNA_02319 0.67 -1.6
2,462,044 + CCNA_02319 0.67 -1.2
2,462,047 - CCNA_02319 0.67 -0.1
2,462,047 - CCNA_02319 0.67 -0.7
2,462,052 - CCNA_02319 0.68 -0.1
2,462,052 - CCNA_02319 0.68 +0.0
2,462,052 - CCNA_02319 0.68 +0.5
2,462,281 + -0.2

Or see this region's nucleotide sequence