Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02278

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02277 and CCNA_02278 are separated by 106 nucleotidesCCNA_02278 and CCNA_02279 overlap by 4 nucleotidesCCNA_02279 and CCNA_02280 overlap by 4 nucleotides CCNA_02277: CCNA_02277 - TonB-dependent outer membrane channel, at 2,426,768 to 2,428,969 _02277 CCNA_02278: CCNA_02278 - hypothetical protein, at 2,429,076 to 2,429,684 _02278 CCNA_02279: CCNA_02279 - disulfide bond formation protein B, at 2,429,681 to 2,430,310 _02279 CCNA_02280: CCNA_02280 - 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 2,430,307 to 2,430,867 _02280 Position (kb) 2429 2430Strain fitness (log2 ratio) -2 -1 0 1at 2428.095 kb on + strand, within CCNA_02277at 2428.275 kb on - strand, within CCNA_02277at 2428.502 kb on - strand, within CCNA_02277at 2428.533 kb on + strand, within CCNA_02277at 2428.597 kb on + strand, within CCNA_02277at 2428.736 kb on + strand, within CCNA_02277at 2428.839 kb on + strandat 2428.891 kb on + strandat 2429.623 kb on - strand, within CCNA_02278at 2429.627 kb on - strandat 2429.695 kb on + strandat 2429.748 kb on - strand, within CCNA_02279at 2429.748 kb on - strand, within CCNA_02279at 2429.962 kb on + strand, within CCNA_02279at 2430.301 kb on - strandat 2430.304 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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2,428,095 + CCNA_02277 0.60 +0.7
2,428,275 - CCNA_02277 0.68 +0.4
2,428,502 - CCNA_02277 0.79 +0.7
2,428,533 + CCNA_02277 0.80 +0.7
2,428,597 + CCNA_02277 0.83 +0.5
2,428,736 + CCNA_02277 0.89 +0.4
2,428,839 + +0.1
2,428,891 + +0.8
2,429,623 - CCNA_02278 0.90 -1.8
2,429,627 - -1.2
2,429,695 + -0.1
2,429,748 - CCNA_02279 0.11 +0.0
2,429,748 - CCNA_02279 0.11 -1.6
2,429,962 + CCNA_02279 0.45 +0.5
2,430,301 - -2.4
2,430,304 + +0.4

Or see this region's nucleotide sequence