Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02271 and CCNA_02272 are separated by 68 nucleotides CCNA_02272 and CCNA_02273 are separated by 34 nucleotides CCNA_02273 and CCNA_02274 are separated by 125 nucleotides CCNA_02274 and CCNA_02275 overlap by 4 nucleotides
CCNA_02271: CCNA_02271 - stalk cross-band protein StpD, at 2,423,833 to 2,424,618
_02271
CCNA_02272: CCNA_02272 - hypothetical protein, at 2,424,687 to 2,424,929
_02272
CCNA_02273: CCNA_02273 - glutathione peroxidase, at 2,424,964 to 2,425,212
_02273
CCNA_02274: CCNA_02274 - EF-Hand domain protein, at 2,425,338 to 2,425,823
_02274
CCNA_02275: CCNA_02275 - ABC transporter, periplasmic component, at 2,425,820 to 2,426,605
_02275
Position (kb)
2424
2425 Strain fitness (log2 ratio)
-2
-1
0
1 at 2423.698 kb on - strand at 2423.723 kb on - strand at 2423.723 kb on - strand at 2423.754 kb on + strand at 2423.831 kb on + strand at 2424.008 kb on + strand, within CCNA_02271 at 2424.041 kb on + strand, within CCNA_02271 at 2424.041 kb on + strand, within CCNA_02271 at 2424.183 kb on - strand, within CCNA_02271 at 2424.229 kb on - strand, within CCNA_02271 at 2424.260 kb on + strand, within CCNA_02271 at 2424.262 kb on + strand, within CCNA_02271 at 2424.268 kb on - strand, within CCNA_02271 at 2424.269 kb on + strand, within CCNA_02271 at 2424.272 kb on + strand, within CCNA_02271 at 2424.280 kb on - strand, within CCNA_02271 at 2424.290 kb on - strand, within CCNA_02271 at 2424.290 kb on - strand, within CCNA_02271 at 2424.313 kb on + strand, within CCNA_02271 at 2424.370 kb on - strand, within CCNA_02271 at 2424.443 kb on + strand, within CCNA_02271 at 2424.577 kb on - strand at 2424.648 kb on + strand at 2424.747 kb on + strand, within CCNA_02272 at 2424.755 kb on - strand, within CCNA_02272 at 2424.805 kb on - strand, within CCNA_02272 at 2424.852 kb on + strand, within CCNA_02272 at 2424.904 kb on - strand, within CCNA_02272 at 2424.962 kb on + strand at 2425.006 kb on - strand, within CCNA_02273 at 2425.248 kb on + strand at 2425.343 kb on - strand at 2425.576 kb on + strand, within CCNA_02274 at 2425.576 kb on + strand, within CCNA_02274 at 2425.584 kb on - strand, within CCNA_02274 at 2425.584 kb on - strand, within CCNA_02274 at 2425.649 kb on - strand, within CCNA_02274 at 2425.740 kb on + strand, within CCNA_02274 at 2425.746 kb on + strand, within CCNA_02274 at 2425.772 kb on - strand, within CCNA_02274 at 2425.782 kb on + strand at 2425.782 kb on + strand at 2425.782 kb on + strand at 2425.790 kb on + strand at 2425.790 kb on - strand at 2425.838 kb on + strand at 2425.856 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 2,423,698 - +0.2 2,423,723 - +0.8 2,423,723 - +0.3 2,423,754 + +0.7 2,423,831 + +0.6 2,424,008 + CCNA_02271 0.22 +0.1 2,424,041 + CCNA_02271 0.26 -0.5 2,424,041 + CCNA_02271 0.26 -0.0 2,424,183 - CCNA_02271 0.45 -0.4 2,424,229 - CCNA_02271 0.50 +0.3 2,424,260 + CCNA_02271 0.54 +0.2 2,424,262 + CCNA_02271 0.55 +0.4 2,424,268 - CCNA_02271 0.55 -0.3 2,424,269 + CCNA_02271 0.55 +0.1 2,424,272 + CCNA_02271 0.56 +0.6 2,424,280 - CCNA_02271 0.57 +0.4 2,424,290 - CCNA_02271 0.58 +0.3 2,424,290 - CCNA_02271 0.58 -0.0 2,424,313 + CCNA_02271 0.61 +0.8 2,424,370 - CCNA_02271 0.68 -0.0 2,424,443 + CCNA_02271 0.78 -0.6 2,424,577 - +1.6 2,424,648 + +0.8 2,424,747 + CCNA_02272 0.25 -0.4 2,424,755 - CCNA_02272 0.28 +0.4 2,424,805 - CCNA_02272 0.49 +0.3 2,424,852 + CCNA_02272 0.68 -0.9 2,424,904 - CCNA_02272 0.89 +0.7 2,424,962 + +0.4 2,425,006 - CCNA_02273 0.17 -0.5 2,425,248 + -0.8 2,425,343 - +0.0 2,425,576 + CCNA_02274 0.49 -0.8 2,425,576 + CCNA_02274 0.49 +1.0 2,425,584 - CCNA_02274 0.51 -0.2 2,425,584 - CCNA_02274 0.51 +0.1 2,425,649 - CCNA_02274 0.64 +0.3 2,425,740 + CCNA_02274 0.83 -1.0 2,425,746 + CCNA_02274 0.84 -1.0 2,425,772 - CCNA_02274 0.89 +1.4 2,425,782 + -0.0 2,425,782 + -0.2 2,425,782 + -0.4 2,425,790 + -0.6 2,425,790 - -0.2 2,425,838 + -1.4 2,425,856 + -2.3
Or see this region's nucleotide sequence