Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02250

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02247 and CCNA_02248 are separated by 1 nucleotidesCCNA_02248 and CCNA_02249 are separated by 74 nucleotidesCCNA_02249 and CCNA_02250 are separated by 207 nucleotidesCCNA_02250 and CCNA_02251 are separated by 60 nucleotidesCCNA_02251 and CCNA_02252 are separated by 21 nucleotides CCNA_02247: CCNA_02247 - pantoate-beta-alanine ligase, at 2,396,214 to 2,397,071 _02247 CCNA_02248: CCNA_02248 - hypothetical protein, at 2,397,073 to 2,397,162 _02248 CCNA_02249: CCNA_02249 - conserved hypothetical cytosolic protein, at 2,397,237 to 2,397,635 _02249 CCNA_02250: CCNA_02250 - methylcrotonyl-CoA carboxylase biotin-containing subunit, at 2,397,843 to 2,399,807 _02250 CCNA_02251: CCNA_02251 - methylglutaconyl-CoA hydratase, at 2,399,868 to 2,400,707 _02251 CCNA_02252: CCNA_02252 - methylcrotonyl-CoA carboxylase carboxyl transferase subunit, at 2,400,729 to 2,402,321 _02252 Position (kb) 2397 2398 2399 2400Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2397.108 kb on + strand, within CCNA_02248at 2397.113 kb on + strand, within CCNA_02248at 2397.171 kb on + strandat 2397.171 kb on + strandat 2397.179 kb on - strandat 2397.199 kb on - strandat 2397.364 kb on - strand, within CCNA_02249at 2397.470 kb on - strand, within CCNA_02249at 2397.470 kb on - strand, within CCNA_02249at 2397.475 kb on - strand, within CCNA_02249at 2397.484 kb on + strand, within CCNA_02249at 2397.484 kb on + strand, within CCNA_02249at 2397.557 kb on - strand, within CCNA_02249at 2397.577 kb on + strand, within CCNA_02249at 2397.614 kb on + strandat 2397.624 kb on + strandat 2397.627 kb on - strandat 2397.637 kb on - strandat 2397.639 kb on - strandat 2397.646 kb on - strandat 2397.659 kb on + strandat 2397.667 kb on - strandat 2397.771 kb on - strandat 2397.771 kb on - strandat 2397.771 kb on - strandat 2397.846 kb on + strandat 2397.846 kb on + strandat 2397.849 kb on - strandat 2397.865 kb on - strandat 2397.867 kb on + strandat 2397.867 kb on + strandat 2397.875 kb on - strandat 2397.943 kb on + strandat 2397.968 kb on + strandat 2397.984 kb on + strandat 2398.025 kb on - strandat 2398.124 kb on - strand, within CCNA_02250at 2398.238 kb on - strand, within CCNA_02250at 2398.238 kb on - strand, within CCNA_02250at 2398.248 kb on + strand, within CCNA_02250at 2398.263 kb on - strand, within CCNA_02250at 2398.486 kb on - strand, within CCNA_02250at 2398.632 kb on - strand, within CCNA_02250at 2398.639 kb on - strand, within CCNA_02250at 2398.674 kb on + strand, within CCNA_02250at 2398.684 kb on - strand, within CCNA_02250at 2398.705 kb on + strand, within CCNA_02250at 2398.771 kb on + strand, within CCNA_02250at 2398.779 kb on - strand, within CCNA_02250at 2398.792 kb on + strand, within CCNA_02250at 2398.879 kb on - strand, within CCNA_02250at 2398.966 kb on - strand, within CCNA_02250at 2398.993 kb on - strand, within CCNA_02250at 2399.014 kb on - strand, within CCNA_02250at 2399.023 kb on + strand, within CCNA_02250at 2399.023 kb on + strand, within CCNA_02250at 2399.031 kb on - strand, within CCNA_02250at 2399.038 kb on + strand, within CCNA_02250at 2399.273 kb on + strand, within CCNA_02250at 2399.296 kb on + strand, within CCNA_02250at 2399.298 kb on - strand, within CCNA_02250at 2399.309 kb on - strand, within CCNA_02250at 2399.332 kb on + strand, within CCNA_02250at 2399.332 kb on + strand, within CCNA_02250at 2399.332 kb on + strand, within CCNA_02250at 2399.332 kb on + strand, within CCNA_02250at 2399.332 kb on + strand, within CCNA_02250at 2399.332 kb on + strand, within CCNA_02250at 2399.426 kb on + strand, within CCNA_02250at 2399.621 kb on + strandat 2399.621 kb on + strandat 2399.621 kb on + strandat 2399.621 kb on + strandat 2399.621 kb on + strandat 2399.668 kb on - strandat 2399.797 kb on + strandat 2399.797 kb on + strandat 2399.800 kb on - strandat 2399.805 kb on - strandat 2399.822 kb on - strandat 2399.845 kb on - strandat 2399.868 kb on - strandat 2400.125 kb on - strand, within CCNA_02251at 2400.130 kb on - strand, within CCNA_02251at 2400.244 kb on - strand, within CCNA_02251at 2400.311 kb on - strand, within CCNA_02251at 2400.311 kb on - strand, within CCNA_02251at 2400.329 kb on - strand, within CCNA_02251at 2400.329 kb on - strand, within CCNA_02251at 2400.466 kb on - strand, within CCNA_02251at 2400.533 kb on - strand, within CCNA_02251

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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2,397,108 + CCNA_02248 0.39 -1.7
2,397,113 + CCNA_02248 0.44 +0.7
2,397,171 + +0.1
2,397,171 + +0.0
2,397,179 - +2.2
2,397,199 - +1.0
2,397,364 - CCNA_02249 0.32 +0.2
2,397,470 - CCNA_02249 0.58 +0.5
2,397,470 - CCNA_02249 0.58 +0.0
2,397,475 - CCNA_02249 0.60 -0.1
2,397,484 + CCNA_02249 0.62 +0.0
2,397,484 + CCNA_02249 0.62 +0.4
2,397,557 - CCNA_02249 0.80 +0.9
2,397,577 + CCNA_02249 0.85 -0.1
2,397,614 + -0.3
2,397,624 + -0.9
2,397,627 - -0.1
2,397,637 - +0.7
2,397,639 - +0.4
2,397,646 - +0.4
2,397,659 + +0.6
2,397,667 - +0.2
2,397,771 - -1.7
2,397,771 - +0.2
2,397,771 - -0.3
2,397,846 + -1.0
2,397,846 + -0.5
2,397,849 - +0.4
2,397,865 - +0.5
2,397,867 + -1.3
2,397,867 + +0.7
2,397,875 - -0.9
2,397,943 + +0.1
2,397,968 + -1.7
2,397,984 + +0.6
2,398,025 - -0.6
2,398,124 - CCNA_02250 0.14 +0.0
2,398,238 - CCNA_02250 0.20 -0.2
2,398,238 - CCNA_02250 0.20 +1.4
2,398,248 + CCNA_02250 0.21 +1.7
2,398,263 - CCNA_02250 0.21 -1.1
2,398,486 - CCNA_02250 0.33 +0.7
2,398,632 - CCNA_02250 0.40 -0.7
2,398,639 - CCNA_02250 0.41 -1.0
2,398,674 + CCNA_02250 0.42 -2.4
2,398,684 - CCNA_02250 0.43 -0.4
2,398,705 + CCNA_02250 0.44 -0.4
2,398,771 + CCNA_02250 0.47 -1.7
2,398,779 - CCNA_02250 0.48 -0.0
2,398,792 + CCNA_02250 0.48 -0.4
2,398,879 - CCNA_02250 0.53 +0.4
2,398,966 - CCNA_02250 0.57 -0.1
2,398,993 - CCNA_02250 0.59 -0.3
2,399,014 - CCNA_02250 0.60 -0.0
2,399,023 + CCNA_02250 0.60 -0.3
2,399,023 + CCNA_02250 0.60 -0.6
2,399,031 - CCNA_02250 0.60 -0.5
2,399,038 + CCNA_02250 0.61 -0.8
2,399,273 + CCNA_02250 0.73 -1.3
2,399,296 + CCNA_02250 0.74 -2.1
2,399,298 - CCNA_02250 0.74 -0.6
2,399,309 - CCNA_02250 0.75 +0.4
2,399,332 + CCNA_02250 0.76 -0.6
2,399,332 + CCNA_02250 0.76 -0.6
2,399,332 + CCNA_02250 0.76 -1.2
2,399,332 + CCNA_02250 0.76 -0.4
2,399,332 + CCNA_02250 0.76 +1.1
2,399,332 + CCNA_02250 0.76 -0.7
2,399,426 + CCNA_02250 0.81 +0.7
2,399,621 + -0.3
2,399,621 + -0.9
2,399,621 + -0.9
2,399,621 + -0.3
2,399,621 + -2.9
2,399,668 - -2.1
2,399,797 + +0.1
2,399,797 + -1.3
2,399,800 - +0.4
2,399,805 - -1.1
2,399,822 - -0.1
2,399,845 - +1.4
2,399,868 - +0.4
2,400,125 - CCNA_02251 0.31 +0.2
2,400,130 - CCNA_02251 0.31 -1.2
2,400,244 - CCNA_02251 0.45 +2.3
2,400,311 - CCNA_02251 0.53 -0.9
2,400,311 - CCNA_02251 0.53 +1.9
2,400,329 - CCNA_02251 0.55 -1.0
2,400,329 - CCNA_02251 0.55 -0.6
2,400,466 - CCNA_02251 0.71 +1.8
2,400,533 - CCNA_02251 0.79 +1.7

Or see this region's nucleotide sequence