Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02232

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02231 and CCNA_02232 are separated by 238 nucleotidesCCNA_02232 and CCNA_02233 are separated by 158 nucleotidesCCNA_02233 and CCNA_02234 are separated by 5 nucleotides CCNA_02231: CCNA_02231 - ABC transporter ATP-binding protein, at 2,377,969 to 2,379,636 _02231 CCNA_02232: CCNA_02232 - TonB-dependent receptor, at 2,379,875 to 2,382,190 _02232 CCNA_02233: CCNA_02233 - signal peptidase I, at 2,382,349 to 2,383,116 _02233 CCNA_02234: CCNA_02234 - EF hand domain protein, at 2,383,122 to 2,383,457 _02234 Position (kb) 2379 2380 2381 2382 2383Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2379.011 kb on - strand, within CCNA_02231at 2379.448 kb on - strand, within CCNA_02231at 2379.694 kb on + strandat 2379.735 kb on + strandat 2379.737 kb on - strandat 2379.743 kb on - strandat 2379.743 kb on - strandat 2379.762 kb on - strandat 2379.775 kb on + strandat 2379.790 kb on - strandat 2379.800 kb on + strandat 2379.801 kb on - strandat 2379.838 kb on - strandat 2379.852 kb on - strandat 2379.853 kb on - strandat 2379.864 kb on - strandat 2379.922 kb on - strandat 2379.922 kb on - strandat 2380.034 kb on + strandat 2380.042 kb on - strandat 2380.042 kb on - strandat 2380.048 kb on + strandat 2380.052 kb on - strandat 2380.056 kb on - strandat 2380.057 kb on - strandat 2380.058 kb on - strandat 2380.116 kb on + strand, within CCNA_02232at 2380.170 kb on + strand, within CCNA_02232at 2380.202 kb on - strand, within CCNA_02232at 2380.215 kb on + strand, within CCNA_02232at 2380.220 kb on + strand, within CCNA_02232at 2380.228 kb on - strand, within CCNA_02232at 2380.240 kb on + strand, within CCNA_02232at 2380.264 kb on - strand, within CCNA_02232at 2380.276 kb on - strand, within CCNA_02232at 2380.321 kb on + strand, within CCNA_02232at 2380.337 kb on + strand, within CCNA_02232at 2380.356 kb on + strand, within CCNA_02232at 2380.356 kb on + strand, within CCNA_02232at 2380.366 kb on + strand, within CCNA_02232at 2380.384 kb on - strand, within CCNA_02232at 2380.490 kb on + strand, within CCNA_02232at 2380.492 kb on + strand, within CCNA_02232at 2380.500 kb on - strand, within CCNA_02232at 2380.509 kb on + strand, within CCNA_02232at 2380.517 kb on - strand, within CCNA_02232at 2380.526 kb on + strand, within CCNA_02232at 2380.534 kb on - strand, within CCNA_02232at 2380.534 kb on - strand, within CCNA_02232at 2380.557 kb on - strand, within CCNA_02232at 2380.652 kb on + strand, within CCNA_02232at 2380.657 kb on + strand, within CCNA_02232at 2380.657 kb on + strand, within CCNA_02232at 2380.657 kb on + strand, within CCNA_02232at 2380.665 kb on - strand, within CCNA_02232at 2380.697 kb on + strand, within CCNA_02232at 2380.716 kb on - strand, within CCNA_02232at 2380.765 kb on + strand, within CCNA_02232at 2380.775 kb on + strand, within CCNA_02232at 2380.775 kb on + strand, within CCNA_02232at 2380.775 kb on + strand, within CCNA_02232at 2380.783 kb on - strand, within CCNA_02232at 2380.797 kb on - strand, within CCNA_02232at 2380.797 kb on - strand, within CCNA_02232at 2380.818 kb on - strand, within CCNA_02232at 2380.839 kb on - strand, within CCNA_02232at 2380.839 kb on - strand, within CCNA_02232at 2380.851 kb on - strand, within CCNA_02232at 2380.864 kb on - strand, within CCNA_02232at 2380.888 kb on + strand, within CCNA_02232at 2380.912 kb on - strand, within CCNA_02232at 2380.930 kb on - strand, within CCNA_02232at 2380.930 kb on - strand, within CCNA_02232at 2380.933 kb on + strand, within CCNA_02232at 2380.933 kb on + strand, within CCNA_02232at 2380.933 kb on + strand, within CCNA_02232at 2380.943 kb on - strand, within CCNA_02232at 2380.943 kb on - strand, within CCNA_02232at 2380.944 kb on - strand, within CCNA_02232at 2380.958 kb on - strand, within CCNA_02232at 2380.969 kb on - strand, within CCNA_02232at 2381.014 kb on + strand, within CCNA_02232at 2381.020 kb on - strand, within CCNA_02232at 2381.027 kb on - strand, within CCNA_02232at 2381.048 kb on - strand, within CCNA_02232at 2381.111 kb on + strand, within CCNA_02232at 2381.114 kb on - strand, within CCNA_02232at 2381.291 kb on - strand, within CCNA_02232at 2381.318 kb on - strand, within CCNA_02232at 2381.338 kb on + strand, within CCNA_02232at 2381.348 kb on + strand, within CCNA_02232at 2381.480 kb on + strand, within CCNA_02232at 2381.488 kb on - strand, within CCNA_02232at 2381.504 kb on - strand, within CCNA_02232at 2381.540 kb on - strand, within CCNA_02232at 2381.541 kb on - strand, within CCNA_02232at 2381.541 kb on - strand, within CCNA_02232at 2381.560 kb on + strand, within CCNA_02232at 2381.583 kb on - strand, within CCNA_02232at 2381.593 kb on + strand, within CCNA_02232at 2381.600 kb on + strand, within CCNA_02232at 2381.632 kb on + strand, within CCNA_02232at 2381.632 kb on + strand, within CCNA_02232at 2381.632 kb on + strand, within CCNA_02232at 2381.632 kb on + strand, within CCNA_02232at 2381.633 kb on + strand, within CCNA_02232at 2381.640 kb on - strand, within CCNA_02232at 2381.640 kb on - strand, within CCNA_02232at 2381.648 kb on + strand, within CCNA_02232at 2381.656 kb on - strand, within CCNA_02232at 2381.661 kb on - strand, within CCNA_02232at 2381.692 kb on + strand, within CCNA_02232at 2381.708 kb on - strand, within CCNA_02232at 2381.718 kb on - strand, within CCNA_02232at 2381.736 kb on + strand, within CCNA_02232at 2381.741 kb on + strand, within CCNA_02232at 2381.741 kb on + strand, within CCNA_02232at 2381.749 kb on - strand, within CCNA_02232at 2381.803 kb on - strand, within CCNA_02232at 2381.803 kb on - strand, within CCNA_02232at 2381.827 kb on + strand, within CCNA_02232at 2381.827 kb on + strand, within CCNA_02232at 2381.827 kb on + strand, within CCNA_02232at 2381.827 kb on + strand, within CCNA_02232at 2381.827 kb on + strand, within CCNA_02232at 2381.827 kb on + strand, within CCNA_02232at 2381.835 kb on - strand, within CCNA_02232at 2381.835 kb on - strand, within CCNA_02232at 2381.835 kb on - strand, within CCNA_02232at 2381.866 kb on - strand, within CCNA_02232at 2381.877 kb on + strand, within CCNA_02232at 2381.914 kb on + strand, within CCNA_02232at 2381.932 kb on + strand, within CCNA_02232at 2381.932 kb on + strand, within CCNA_02232at 2381.934 kb on + strand, within CCNA_02232at 2381.940 kb on - strand, within CCNA_02232at 2381.940 kb on - strand, within CCNA_02232at 2381.940 kb on - strand, within CCNA_02232at 2381.940 kb on - strand, within CCNA_02232at 2382.011 kb on + strandat 2382.011 kb on + strandat 2382.012 kb on - strandat 2382.022 kb on + strandat 2382.036 kb on - strandat 2382.045 kb on - strandat 2382.059 kb on - strandat 2382.064 kb on - strandat 2382.070 kb on + strandat 2382.079 kb on - strandat 2382.111 kb on - strandat 2382.111 kb on - strandat 2382.111 kb on - strandat 2382.111 kb on - strandat 2382.111 kb on - strandat 2382.111 kb on - strandat 2382.113 kb on + strandat 2382.127 kb on + strandat 2382.128 kb on + strandat 2382.128 kb on + strandat 2382.128 kb on + strandat 2382.128 kb on + strandat 2382.128 kb on + strandat 2382.128 kb on + strandat 2382.128 kb on + strandat 2382.128 kb on + strandat 2382.136 kb on - strandat 2382.136 kb on - strandat 2382.136 kb on - strandat 2382.136 kb on - strandat 2382.136 kb on - strandat 2382.136 kb on - strandat 2382.136 kb on - strandat 2382.137 kb on + strandat 2382.144 kb on - strandat 2382.160 kb on + strandat 2382.168 kb on - strandat 2382.264 kb on + strandat 2382.264 kb on + strandat 2382.265 kb on + strandat 2382.265 kb on + strandat 2382.272 kb on - strandat 2382.273 kb on - strandat 2382.286 kb on + strandat 2382.294 kb on - strandat 2382.296 kb on + strandat 2382.330 kb on - strandat 2382.347 kb on - strandat 2382.360 kb on - strandat 2382.365 kb on + strandat 2382.405 kb on + strandat 2382.441 kb on - strand, within CCNA_02233at 2382.441 kb on - strand, within CCNA_02233at 2382.467 kb on + strand, within CCNA_02233at 2382.474 kb on + strand, within CCNA_02233at 2382.513 kb on + strand, within CCNA_02233at 2382.513 kb on + strand, within CCNA_02233at 2382.561 kb on - strand, within CCNA_02233at 2382.575 kb on + strand, within CCNA_02233at 2382.617 kb on - strand, within CCNA_02233at 2382.659 kb on + strand, within CCNA_02233at 2382.659 kb on + strand, within CCNA_02233at 2382.659 kb on + strand, within CCNA_02233at 2382.664 kb on + strand, within CCNA_02233at 2382.664 kb on + strand, within CCNA_02233at 2382.667 kb on - strand, within CCNA_02233at 2382.667 kb on - strand, within CCNA_02233at 2382.780 kb on + strand, within CCNA_02233at 2382.790 kb on + strand, within CCNA_02233at 2382.790 kb on - strand, within CCNA_02233at 2382.797 kb on + strand, within CCNA_02233at 2382.800 kb on + strand, within CCNA_02233at 2382.859 kb on - strand, within CCNA_02233at 2382.899 kb on - strand, within CCNA_02233at 2382.899 kb on - strand, within CCNA_02233at 2382.925 kb on - strand, within CCNA_02233at 2382.967 kb on + strand, within CCNA_02233at 2383.009 kb on + strand, within CCNA_02233at 2383.012 kb on + strand, within CCNA_02233at 2383.014 kb on + strand, within CCNA_02233at 2383.031 kb on + strand, within CCNA_02233at 2383.034 kb on + strand, within CCNA_02233at 2383.034 kb on + strand, within CCNA_02233at 2383.051 kb on + strandat 2383.056 kb on + strandat 2383.062 kb on + strandat 2383.062 kb on + strandat 2383.063 kb on + strandat 2383.063 kb on + strandat 2383.064 kb on - strandat 2383.070 kb on - strandat 2383.071 kb on - strandat 2383.071 kb on - strandat 2383.071 kb on - strandat 2383.137 kb on + strandat 2383.139 kb on + strandat 2383.139 kb on + strandat 2383.147 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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2,379,011 - CCNA_02231 0.62 +0.9
2,379,448 - CCNA_02231 0.89 +0.1
2,379,694 + -2.0
2,379,735 + -0.2
2,379,737 - +0.1
2,379,743 - -1.2
2,379,743 - -2.8
2,379,762 - -0.1
2,379,775 + -1.3
2,379,790 - -0.8
2,379,800 + +0.0
2,379,801 - -0.8
2,379,838 - -0.8
2,379,852 - +0.4
2,379,853 - -0.1
2,379,864 - -3.4
2,379,922 - -1.3
2,379,922 - -0.5
2,380,034 + +2.7
2,380,042 - -1.9
2,380,042 - -2.5
2,380,048 + -1.3
2,380,052 - +0.3
2,380,056 - -1.0
2,380,057 - -0.1
2,380,058 - -0.3
2,380,116 + CCNA_02232 0.10 -1.2
2,380,170 + CCNA_02232 0.13 +0.6
2,380,202 - CCNA_02232 0.14 -0.3
2,380,215 + CCNA_02232 0.15 -0.1
2,380,220 + CCNA_02232 0.15 -1.0
2,380,228 - CCNA_02232 0.15 -0.4
2,380,240 + CCNA_02232 0.16 -1.5
2,380,264 - CCNA_02232 0.17 -0.2
2,380,276 - CCNA_02232 0.17 -0.2
2,380,321 + CCNA_02232 0.19 -0.6
2,380,337 + CCNA_02232 0.20 -0.2
2,380,356 + CCNA_02232 0.21 -1.2
2,380,356 + CCNA_02232 0.21 -0.7
2,380,366 + CCNA_02232 0.21 -2.2
2,380,384 - CCNA_02232 0.22 -0.5
2,380,490 + CCNA_02232 0.27 -1.4
2,380,492 + CCNA_02232 0.27 -0.3
2,380,500 - CCNA_02232 0.27 -0.3
2,380,509 + CCNA_02232 0.27 -2.7
2,380,517 - CCNA_02232 0.28 -0.2
2,380,526 + CCNA_02232 0.28 -1.9
2,380,534 - CCNA_02232 0.28 -1.5
2,380,534 - CCNA_02232 0.28 -1.5
2,380,557 - CCNA_02232 0.29 -1.8
2,380,652 + CCNA_02232 0.34 +0.6
2,380,657 + CCNA_02232 0.34 +0.2
2,380,657 + CCNA_02232 0.34 -0.7
2,380,657 + CCNA_02232 0.34 -0.9
2,380,665 - CCNA_02232 0.34 +0.1
2,380,697 + CCNA_02232 0.35 -1.9
2,380,716 - CCNA_02232 0.36 -1.3
2,380,765 + CCNA_02232 0.38 -0.6
2,380,775 + CCNA_02232 0.39 -1.0
2,380,775 + CCNA_02232 0.39 -0.3
2,380,775 + CCNA_02232 0.39 +0.5
2,380,783 - CCNA_02232 0.39 +0.2
2,380,797 - CCNA_02232 0.40 -0.7
2,380,797 - CCNA_02232 0.40 -0.5
2,380,818 - CCNA_02232 0.41 +0.3
2,380,839 - CCNA_02232 0.42 -1.5
2,380,839 - CCNA_02232 0.42 -0.5
2,380,851 - CCNA_02232 0.42 -0.8
2,380,864 - CCNA_02232 0.43 +0.1
2,380,888 + CCNA_02232 0.44 -0.4
2,380,912 - CCNA_02232 0.45 -0.7
2,380,930 - CCNA_02232 0.46 +0.4
2,380,930 - CCNA_02232 0.46 -1.7
2,380,933 + CCNA_02232 0.46 -1.0
2,380,933 + CCNA_02232 0.46 -0.5
2,380,933 + CCNA_02232 0.46 -1.2
2,380,943 - CCNA_02232 0.46 -0.6
2,380,943 - CCNA_02232 0.46 -0.1
2,380,944 - CCNA_02232 0.46 +0.1
2,380,958 - CCNA_02232 0.47 -1.4
2,380,969 - CCNA_02232 0.47 -1.5
2,381,014 + CCNA_02232 0.49 -2.6
2,381,020 - CCNA_02232 0.49 -0.2
2,381,027 - CCNA_02232 0.50 -0.4
2,381,048 - CCNA_02232 0.51 +0.3
2,381,111 + CCNA_02232 0.53 -1.5
2,381,114 - CCNA_02232 0.53 -1.8
2,381,291 - CCNA_02232 0.61 +0.3
2,381,318 - CCNA_02232 0.62 -0.7
2,381,338 + CCNA_02232 0.63 +0.7
2,381,348 + CCNA_02232 0.64 +0.9
2,381,480 + CCNA_02232 0.69 +0.1
2,381,488 - CCNA_02232 0.70 -0.4
2,381,504 - CCNA_02232 0.70 +1.4
2,381,540 - CCNA_02232 0.72 +0.0
2,381,541 - CCNA_02232 0.72 +0.5
2,381,541 - CCNA_02232 0.72 -1.8
2,381,560 + CCNA_02232 0.73 -2.0
2,381,583 - CCNA_02232 0.74 -1.4
2,381,593 + CCNA_02232 0.74 +0.4
2,381,600 + CCNA_02232 0.74 -1.4
2,381,632 + CCNA_02232 0.76 +0.1
2,381,632 + CCNA_02232 0.76 -0.7
2,381,632 + CCNA_02232 0.76 +0.6
2,381,632 + CCNA_02232 0.76 -0.6
2,381,633 + CCNA_02232 0.76 -0.4
2,381,640 - CCNA_02232 0.76 +0.9
2,381,640 - CCNA_02232 0.76 -0.8
2,381,648 + CCNA_02232 0.77 -1.5
2,381,656 - CCNA_02232 0.77 -0.9
2,381,661 - CCNA_02232 0.77 -1.2
2,381,692 + CCNA_02232 0.78 +0.4
2,381,708 - CCNA_02232 0.79 -1.0
2,381,718 - CCNA_02232 0.80 -0.1
2,381,736 + CCNA_02232 0.80 +0.4
2,381,741 + CCNA_02232 0.81 -0.7
2,381,741 + CCNA_02232 0.81 -2.8
2,381,749 - CCNA_02232 0.81 -0.2
2,381,803 - CCNA_02232 0.83 -1.6
2,381,803 - CCNA_02232 0.83 -0.2
2,381,827 + CCNA_02232 0.84 -0.2
2,381,827 + CCNA_02232 0.84 +0.6
2,381,827 + CCNA_02232 0.84 -2.0
2,381,827 + CCNA_02232 0.84 -0.4
2,381,827 + CCNA_02232 0.84 -0.3
2,381,827 + CCNA_02232 0.84 -1.4
2,381,835 - CCNA_02232 0.85 -0.0
2,381,835 - CCNA_02232 0.85 -1.2
2,381,835 - CCNA_02232 0.85 +0.2
2,381,866 - CCNA_02232 0.86 -1.0
2,381,877 + CCNA_02232 0.86 -1.6
2,381,914 + CCNA_02232 0.88 -0.9
2,381,932 + CCNA_02232 0.89 -0.4
2,381,932 + CCNA_02232 0.89 +0.8
2,381,934 + CCNA_02232 0.89 +0.5
2,381,940 - CCNA_02232 0.89 +0.1
2,381,940 - CCNA_02232 0.89 -0.7
2,381,940 - CCNA_02232 0.89 -0.3
2,381,940 - CCNA_02232 0.89 -0.5
2,382,011 + -0.2
2,382,011 + -0.6
2,382,012 - -0.2
2,382,022 + -0.2
2,382,036 - -0.9
2,382,045 - -0.1
2,382,059 - -0.5
2,382,064 - -0.3
2,382,070 + -0.0
2,382,079 - -1.4
2,382,111 - -0.3
2,382,111 - -1.5
2,382,111 - -2.0
2,382,111 - -1.2
2,382,111 - -1.2
2,382,111 - -0.2
2,382,113 + +1.3
2,382,127 + -0.9
2,382,128 + -1.0
2,382,128 + +0.1
2,382,128 + +0.1
2,382,128 + -0.2
2,382,128 + +1.7
2,382,128 + -1.1
2,382,128 + -0.0
2,382,128 + -0.4
2,382,136 - -0.5
2,382,136 - +0.1
2,382,136 - -0.3
2,382,136 - +0.2
2,382,136 - -0.0
2,382,136 - -0.3
2,382,136 - -0.3
2,382,137 + -0.7
2,382,144 - -2.2
2,382,160 + -0.6
2,382,168 - -0.4
2,382,264 + -0.9
2,382,264 + -2.4
2,382,265 + +0.4
2,382,265 + -0.7
2,382,272 - -0.2
2,382,273 - +0.6
2,382,286 + -1.0
2,382,294 - +0.1
2,382,296 + -0.8
2,382,330 - +0.4
2,382,347 - +0.1
2,382,360 - +0.2
2,382,365 + -1.5
2,382,405 + -0.4
2,382,441 - CCNA_02233 0.12 +0.2
2,382,441 - CCNA_02233 0.12 -0.0
2,382,467 + CCNA_02233 0.15 -0.6
2,382,474 + CCNA_02233 0.16 -0.4
2,382,513 + CCNA_02233 0.21 -0.3
2,382,513 + CCNA_02233 0.21 -0.8
2,382,561 - CCNA_02233 0.28 -0.8
2,382,575 + CCNA_02233 0.29 -0.6
2,382,617 - CCNA_02233 0.35 -0.3
2,382,659 + CCNA_02233 0.40 -3.2
2,382,659 + CCNA_02233 0.40 -0.1
2,382,659 + CCNA_02233 0.40 -0.3
2,382,664 + CCNA_02233 0.41 -1.9
2,382,664 + CCNA_02233 0.41 -1.3
2,382,667 - CCNA_02233 0.41 -0.1
2,382,667 - CCNA_02233 0.41 +1.2
2,382,780 + CCNA_02233 0.56 -2.6
2,382,790 + CCNA_02233 0.57 -0.4
2,382,790 - CCNA_02233 0.57 +0.6
2,382,797 + CCNA_02233 0.58 +0.4
2,382,800 + CCNA_02233 0.59 +0.5
2,382,859 - CCNA_02233 0.66 +1.6
2,382,899 - CCNA_02233 0.72 -0.9
2,382,899 - CCNA_02233 0.72 -0.2
2,382,925 - CCNA_02233 0.75 +0.0
2,382,967 + CCNA_02233 0.80 -1.5
2,383,009 + CCNA_02233 0.86 -0.5
2,383,012 + CCNA_02233 0.86 -0.2
2,383,014 + CCNA_02233 0.87 -0.4
2,383,031 + CCNA_02233 0.89 -2.2
2,383,034 + CCNA_02233 0.89 +0.1
2,383,034 + CCNA_02233 0.89 +0.0
2,383,051 + +0.7
2,383,056 + -0.0
2,383,062 + +0.5
2,383,062 + -3.9
2,383,063 + -0.1
2,383,063 + -0.9
2,383,064 - -0.2
2,383,070 - +0.9
2,383,071 - -0.3
2,383,071 - +0.3
2,383,071 - -0.4
2,383,137 + +0.1
2,383,139 + -0.8
2,383,139 + -0.1
2,383,147 - +0.4

Or see this region's nucleotide sequence