Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02174 and CCNA_02175 are separated by 10 nucleotides CCNA_02175 and CCNA_02176 are separated by 14 nucleotides CCNA_02176 and CCNA_02177 are separated by 78 nucleotides CCNA_02177 and CCNA_02178 are separated by 63 nucleotides
CCNA_02174: CCNA_02174 - multidrug resistance efflux pump, at 2,326,862 to 2,327,866
_02174
CCNA_02175: CCNA_02175 - hypothetical protein, at 2,327,877 to 2,328,401
_02175
CCNA_02176: CCNA_02176 - hypothetical protein, at 2,328,416 to 2,328,604
_02176
CCNA_02177: CCNA_02177 - hypothetical protein, at 2,328,683 to 2,328,937
_02177
CCNA_02178: CCNA_02178 - short-chain alcohol dehydrogenase, at 2,329,001 to 2,329,906
_02178
Position (kb)
2328
2329 Strain fitness (log2 ratio)
-2
-1
0
1 at 2327.691 kb on + strand, within CCNA_02174 at 2327.709 kb on - strand, within CCNA_02174 at 2327.816 kb on - strand at 2327.817 kb on + strand at 2327.882 kb on - strand at 2327.889 kb on + strand at 2327.889 kb on + strand at 2327.897 kb on - strand at 2327.897 kb on - strand at 2327.936 kb on + strand, within CCNA_02175 at 2327.954 kb on + strand, within CCNA_02175 at 2327.954 kb on + strand, within CCNA_02175 at 2327.954 kb on + strand, within CCNA_02175 at 2327.954 kb on + strand, within CCNA_02175 at 2327.962 kb on - strand, within CCNA_02175 at 2328.015 kb on - strand, within CCNA_02175 at 2328.145 kb on + strand, within CCNA_02175 at 2328.154 kb on + strand, within CCNA_02175 at 2328.177 kb on + strand, within CCNA_02175 at 2328.178 kb on + strand, within CCNA_02175 at 2328.189 kb on + strand, within CCNA_02175 at 2328.189 kb on + strand, within CCNA_02175 at 2328.197 kb on - strand, within CCNA_02175 at 2328.197 kb on - strand, within CCNA_02175 at 2328.248 kb on + strand, within CCNA_02175 at 2328.370 kb on - strand at 2328.639 kb on + strand at 2328.647 kb on - strand at 2328.647 kb on - strand at 2328.656 kb on + strand at 2328.722 kb on - strand, within CCNA_02177 at 2328.775 kb on - strand, within CCNA_02177 at 2328.775 kb on - strand, within CCNA_02177 at 2328.847 kb on + strand, within CCNA_02177 at 2328.847 kb on + strand, within CCNA_02177 at 2328.855 kb on - strand, within CCNA_02177 at 2328.862 kb on + strand, within CCNA_02177 at 2328.908 kb on + strand, within CCNA_02177 at 2328.941 kb on + strand at 2328.946 kb on + strand at 2328.956 kb on + strand at 2329.074 kb on + strand at 2329.082 kb on - strand at 2329.082 kb on - strand at 2329.082 kb on - strand at 2329.082 kb on - strand at 2329.111 kb on - strand, within CCNA_02178 at 2329.160 kb on + strand, within CCNA_02178 at 2329.259 kb on - strand, within CCNA_02178 at 2329.261 kb on + strand, within CCNA_02178 at 2329.261 kb on + strand, within CCNA_02178 at 2329.261 kb on + strand, within CCNA_02178 at 2329.270 kb on - strand, within CCNA_02178 at 2329.280 kb on - strand, within CCNA_02178 at 2329.305 kb on + strand, within CCNA_02178 at 2329.305 kb on + strand, within CCNA_02178 at 2329.335 kb on + strand, within CCNA_02178 at 2329.343 kb on - strand, within CCNA_02178 at 2329.350 kb on + strand, within CCNA_02178 at 2329.360 kb on + strand, within CCNA_02178 at 2329.360 kb on + strand, within CCNA_02178 at 2329.386 kb on + strand, within CCNA_02178 at 2329.404 kb on - strand, within CCNA_02178 at 2329.406 kb on + strand, within CCNA_02178 at 2329.484 kb on + strand, within CCNA_02178 at 2329.487 kb on - strand, within CCNA_02178 at 2329.528 kb on + strand, within CCNA_02178 at 2329.536 kb on - strand, within CCNA_02178 at 2329.636 kb on + strand, within CCNA_02178 at 2329.644 kb on - strand, within CCNA_02178 at 2329.681 kb on - strand, within CCNA_02178 at 2329.749 kb on - strand, within CCNA_02178 at 2329.756 kb on + strand, within CCNA_02178 at 2329.825 kb on - strand at 2329.825 kb on - strand at 2329.871 kb on + strand at 2329.879 kb on - strand at 2329.879 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 2,327,691 + CCNA_02174 0.82 +0.2 2,327,709 - CCNA_02174 0.84 -1.2 2,327,816 - +0.5 2,327,817 + +1.0 2,327,882 - -0.1 2,327,889 + +0.4 2,327,889 + +0.6 2,327,897 - +0.1 2,327,897 - +1.3 2,327,936 + CCNA_02175 0.11 -0.4 2,327,954 + CCNA_02175 0.15 +0.3 2,327,954 + CCNA_02175 0.15 +0.5 2,327,954 + CCNA_02175 0.15 +0.0 2,327,954 + CCNA_02175 0.15 -0.6 2,327,962 - CCNA_02175 0.16 -0.5 2,328,015 - CCNA_02175 0.26 -1.1 2,328,145 + CCNA_02175 0.51 -0.6 2,328,154 + CCNA_02175 0.53 -1.3 2,328,177 + CCNA_02175 0.57 -1.0 2,328,178 + CCNA_02175 0.57 +0.1 2,328,189 + CCNA_02175 0.59 -2.0 2,328,189 + CCNA_02175 0.59 -0.2 2,328,197 - CCNA_02175 0.61 +1.5 2,328,197 - CCNA_02175 0.61 -0.1 2,328,248 + CCNA_02175 0.71 -0.2 2,328,370 - -0.8 2,328,639 + -0.5 2,328,647 - -1.1 2,328,647 - +0.9 2,328,656 + -0.9 2,328,722 - CCNA_02177 0.15 -0.8 2,328,775 - CCNA_02177 0.36 -0.7 2,328,775 - CCNA_02177 0.36 -0.8 2,328,847 + CCNA_02177 0.64 -1.7 2,328,847 + CCNA_02177 0.64 -0.7 2,328,855 - CCNA_02177 0.67 -0.6 2,328,862 + CCNA_02177 0.70 -1.4 2,328,908 + CCNA_02177 0.88 -0.5 2,328,941 + +0.3 2,328,946 + -0.5 2,328,956 + -0.0 2,329,074 + +0.4 2,329,082 - +1.0 2,329,082 - -0.3 2,329,082 - +0.2 2,329,082 - +0.4 2,329,111 - CCNA_02178 0.12 -0.5 2,329,160 + CCNA_02178 0.18 +0.8 2,329,259 - CCNA_02178 0.28 +0.0 2,329,261 + CCNA_02178 0.29 -0.2 2,329,261 + CCNA_02178 0.29 -0.1 2,329,261 + CCNA_02178 0.29 +0.1 2,329,270 - CCNA_02178 0.30 -1.6 2,329,280 - CCNA_02178 0.31 +0.1 2,329,305 + CCNA_02178 0.34 -0.2 2,329,305 + CCNA_02178 0.34 +0.2 2,329,335 + CCNA_02178 0.37 -0.3 2,329,343 - CCNA_02178 0.38 +0.3 2,329,350 + CCNA_02178 0.39 +0.2 2,329,360 + CCNA_02178 0.40 +0.4 2,329,360 + CCNA_02178 0.40 -0.3 2,329,386 + CCNA_02178 0.42 +0.8 2,329,404 - CCNA_02178 0.44 +0.1 2,329,406 + CCNA_02178 0.45 +0.7 2,329,484 + CCNA_02178 0.53 -0.9 2,329,487 - CCNA_02178 0.54 +0.0 2,329,528 + CCNA_02178 0.58 -0.3 2,329,536 - CCNA_02178 0.59 -1.0 2,329,636 + CCNA_02178 0.70 +0.4 2,329,644 - CCNA_02178 0.71 +0.3 2,329,681 - CCNA_02178 0.75 -0.3 2,329,749 - CCNA_02178 0.83 -1.0 2,329,756 + CCNA_02178 0.83 -0.4 2,329,825 - -0.3 2,329,825 - -0.8 2,329,871 + +0.3 2,329,879 - -0.6 2,329,879 - -0.1
Or see this region's nucleotide sequence