Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02094

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02093 and CCNA_02094 are separated by 29 nucleotidesCCNA_02094 and CCNA_02095 are separated by 118 nucleotides CCNA_02093: CCNA_02093 - hypothetical protein, at 2,240,848 to 2,242,695 _02093 CCNA_02094: CCNA_02094 - MviM-like NAD-dependent oxidoreductase, at 2,242,725 to 2,243,642 _02094 CCNA_02095: CCNA_02095 - NAD/NADH-dependent eicosanoid dehydrogenase, at 2,243,761 to 2,244,786 _02095 Position (kb) 2242 2243 2244Strain fitness (log2 ratio) -2 -1 0 1 2at 2241.765 kb on + strand, within CCNA_02093at 2241.773 kb on - strand, within CCNA_02093at 2241.778 kb on - strand, within CCNA_02093at 2241.802 kb on - strand, within CCNA_02093at 2241.961 kb on + strand, within CCNA_02093at 2242.073 kb on + strand, within CCNA_02093at 2242.100 kb on + strand, within CCNA_02093at 2242.128 kb on + strand, within CCNA_02093at 2242.128 kb on + strand, within CCNA_02093at 2242.136 kb on - strand, within CCNA_02093at 2242.176 kb on - strand, within CCNA_02093at 2242.186 kb on + strand, within CCNA_02093at 2242.239 kb on - strand, within CCNA_02093at 2242.258 kb on + strand, within CCNA_02093at 2242.266 kb on - strand, within CCNA_02093at 2242.279 kb on + strand, within CCNA_02093at 2242.287 kb on - strand, within CCNA_02093at 2242.287 kb on - strand, within CCNA_02093at 2242.292 kb on - strand, within CCNA_02093at 2242.293 kb on + strand, within CCNA_02093at 2242.298 kb on + strand, within CCNA_02093at 2242.370 kb on + strand, within CCNA_02093at 2242.372 kb on + strand, within CCNA_02093at 2242.377 kb on + strand, within CCNA_02093at 2242.380 kb on - strand, within CCNA_02093at 2242.395 kb on - strand, within CCNA_02093at 2242.416 kb on - strand, within CCNA_02093at 2242.535 kb on - strandat 2242.559 kb on + strandat 2242.559 kb on + strandat 2242.559 kb on + strandat 2242.567 kb on - strandat 2242.643 kb on - strandat 2242.661 kb on - strandat 2242.680 kb on + strandat 2242.729 kb on - strandat 2242.796 kb on - strandat 2242.858 kb on + strand, within CCNA_02094at 2242.957 kb on + strand, within CCNA_02094at 2243.005 kb on + strand, within CCNA_02094at 2243.015 kb on - strand, within CCNA_02094at 2243.143 kb on - strand, within CCNA_02094at 2243.164 kb on - strand, within CCNA_02094at 2243.265 kb on - strand, within CCNA_02094at 2243.353 kb on + strand, within CCNA_02094at 2243.398 kb on + strand, within CCNA_02094at 2243.501 kb on - strand, within CCNA_02094at 2243.560 kb on - strandat 2243.632 kb on + strandat 2243.646 kb on + strandat 2243.646 kb on - strandat 2243.651 kb on + strandat 2243.651 kb on + strandat 2243.682 kb on + strandat 2243.692 kb on + strandat 2243.739 kb on + strandat 2243.739 kb on + strandat 2243.739 kb on + strandat 2243.747 kb on - strandat 2243.747 kb on - strandat 2243.823 kb on - strandat 2243.835 kb on - strandat 2243.847 kb on - strandat 2243.874 kb on + strand, within CCNA_02095at 2243.874 kb on + strand, within CCNA_02095at 2243.968 kb on + strand, within CCNA_02095at 2244.023 kb on - strand, within CCNA_02095at 2244.023 kb on - strand, within CCNA_02095at 2244.055 kb on + strand, within CCNA_02095at 2244.139 kb on + strand, within CCNA_02095at 2244.179 kb on - strand, within CCNA_02095at 2244.180 kb on + strand, within CCNA_02095at 2244.201 kb on - strand, within CCNA_02095at 2244.252 kb on - strand, within CCNA_02095at 2244.293 kb on - strand, within CCNA_02095at 2244.320 kb on - strand, within CCNA_02095at 2244.379 kb on + strand, within CCNA_02095at 2244.383 kb on + strand, within CCNA_02095at 2244.391 kb on - strand, within CCNA_02095at 2244.405 kb on + strand, within CCNA_02095at 2244.405 kb on + strand, within CCNA_02095at 2244.405 kb on + strand, within CCNA_02095at 2244.405 kb on + strand, within CCNA_02095at 2244.405 kb on + strand, within CCNA_02095at 2244.405 kb on + strand, within CCNA_02095at 2244.413 kb on - strand, within CCNA_02095at 2244.413 kb on - strand, within CCNA_02095at 2244.413 kb on - strand, within CCNA_02095at 2244.427 kb on + strand, within CCNA_02095at 2244.462 kb on + strand, within CCNA_02095at 2244.482 kb on - strand, within CCNA_02095at 2244.500 kb on + strand, within CCNA_02095at 2244.518 kb on - strand, within CCNA_02095at 2244.518 kb on - strand, within CCNA_02095

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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2,241,765 + CCNA_02093 0.50 +0.2
2,241,773 - CCNA_02093 0.50 +1.3
2,241,778 - CCNA_02093 0.50 -0.4
2,241,802 - CCNA_02093 0.52 +0.3
2,241,961 + CCNA_02093 0.60 -0.5
2,242,073 + CCNA_02093 0.66 -0.1
2,242,100 + CCNA_02093 0.68 +0.2
2,242,128 + CCNA_02093 0.69 +1.4
2,242,128 + CCNA_02093 0.69 +0.2
2,242,136 - CCNA_02093 0.70 +0.6
2,242,176 - CCNA_02093 0.72 +0.2
2,242,186 + CCNA_02093 0.72 +0.5
2,242,239 - CCNA_02093 0.75 -0.2
2,242,258 + CCNA_02093 0.76 -0.3
2,242,266 - CCNA_02093 0.77 +1.8
2,242,279 + CCNA_02093 0.77 +0.2
2,242,287 - CCNA_02093 0.78 +0.7
2,242,287 - CCNA_02093 0.78 +0.4
2,242,292 - CCNA_02093 0.78 +0.0
2,242,293 + CCNA_02093 0.78 -0.0
2,242,298 + CCNA_02093 0.78 -0.1
2,242,370 + CCNA_02093 0.82 +0.5
2,242,372 + CCNA_02093 0.82 +0.5
2,242,377 + CCNA_02093 0.83 +0.1
2,242,380 - CCNA_02093 0.83 +0.3
2,242,395 - CCNA_02093 0.84 -0.7
2,242,416 - CCNA_02093 0.85 +0.1
2,242,535 - +0.4
2,242,559 + +0.1
2,242,559 + -0.1
2,242,559 + -0.0
2,242,567 - +0.3
2,242,643 - +0.8
2,242,661 - +0.5
2,242,680 + -0.2
2,242,729 - +0.0
2,242,796 - +0.3
2,242,858 + CCNA_02094 0.14 -0.7
2,242,957 + CCNA_02094 0.25 -0.9
2,243,005 + CCNA_02094 0.31 +0.8
2,243,015 - CCNA_02094 0.32 +0.8
2,243,143 - CCNA_02094 0.46 +0.0
2,243,164 - CCNA_02094 0.48 -0.6
2,243,265 - CCNA_02094 0.59 +0.2
2,243,353 + CCNA_02094 0.68 +2.3
2,243,398 + CCNA_02094 0.73 -0.2
2,243,501 - CCNA_02094 0.85 -0.0
2,243,560 - -0.7
2,243,632 + -0.1
2,243,646 + -0.5
2,243,646 - -0.7
2,243,651 + -1.3
2,243,651 + -2.3
2,243,682 + +0.6
2,243,692 + +0.8
2,243,739 + +0.1
2,243,739 + +0.4
2,243,739 + -0.5
2,243,747 - -0.7
2,243,747 - +0.1
2,243,823 - +0.3
2,243,835 - -0.1
2,243,847 - -1.1
2,243,874 + CCNA_02095 0.11 +0.5
2,243,874 + CCNA_02095 0.11 +0.6
2,243,968 + CCNA_02095 0.20 +1.0
2,244,023 - CCNA_02095 0.26 -1.4
2,244,023 - CCNA_02095 0.26 +0.4
2,244,055 + CCNA_02095 0.29 +0.8
2,244,139 + CCNA_02095 0.37 +0.3
2,244,179 - CCNA_02095 0.41 +0.2
2,244,180 + CCNA_02095 0.41 -1.1
2,244,201 - CCNA_02095 0.43 +0.2
2,244,252 - CCNA_02095 0.48 +0.1
2,244,293 - CCNA_02095 0.52 -0.2
2,244,320 - CCNA_02095 0.54 +0.4
2,244,379 + CCNA_02095 0.60 -0.1
2,244,383 + CCNA_02095 0.61 +0.4
2,244,391 - CCNA_02095 0.61 -0.6
2,244,405 + CCNA_02095 0.63 +0.4
2,244,405 + CCNA_02095 0.63 +0.3
2,244,405 + CCNA_02095 0.63 +0.2
2,244,405 + CCNA_02095 0.63 +0.3
2,244,405 + CCNA_02095 0.63 -0.1
2,244,405 + CCNA_02095 0.63 -2.0
2,244,413 - CCNA_02095 0.64 +0.8
2,244,413 - CCNA_02095 0.64 +0.0
2,244,413 - CCNA_02095 0.64 -0.7
2,244,427 + CCNA_02095 0.65 -0.8
2,244,462 + CCNA_02095 0.68 -0.3
2,244,482 - CCNA_02095 0.70 +0.1
2,244,500 + CCNA_02095 0.72 +1.3
2,244,518 - CCNA_02095 0.74 -0.3
2,244,518 - CCNA_02095 0.74 +0.5

Or see this region's nucleotide sequence