Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02083 and CCNA_02084 overlap by 4 nucleotides CCNA_02084 and CCNA_02085 overlap by 4 nucleotides CCNA_02085 and CCNA_02086 overlap by 4 nucleotides CCNA_02086 and CCNA_02087 are separated by 169 nucleotides
CCNA_02083: CCNA_02083 - chromosome segregation and condensation protein B scpB, at 2,232,870 to 2,233,535
_02083
CCNA_02084: CCNA_02084 - chromosome segregation and condensation protein fusion scpA, at 2,233,532 to 2,234,356
_02084
CCNA_02085: CCNA_02085 - anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase, at 2,234,353 to 2,235,390
_02085
CCNA_02086: CCNA_02086 - cell division protein FtsN, at 2,235,387 to 2,236,187
_02086
CCNA_02087: CCNA_02087 - deoxyguanosinetriphosphate triphosphohydrolase, at 2,236,357 to 2,237,541
_02087
Position (kb)
2234
2235
2236 Strain fitness (log2 ratio)
-2
-1
0
1 at 2233.357 kb on + strand, within CCNA_02083 at 2233.365 kb on - strand, within CCNA_02083 at 2233.367 kb on + strand, within CCNA_02083 at 2233.370 kb on - strand, within CCNA_02083 at 2233.370 kb on - strand, within CCNA_02083 at 2233.480 kb on + strand at 2233.527 kb on - strand at 2233.585 kb on - strand at 2233.617 kb on + strand, within CCNA_02084 at 2233.653 kb on - strand, within CCNA_02084 at 2233.735 kb on + strand, within CCNA_02084 at 2233.740 kb on + strand, within CCNA_02084 at 2233.740 kb on + strand, within CCNA_02084 at 2233.786 kb on + strand, within CCNA_02084 at 2233.817 kb on - strand, within CCNA_02084 at 2233.830 kb on + strand, within CCNA_02084 at 2233.830 kb on + strand, within CCNA_02084 at 2233.838 kb on - strand, within CCNA_02084 at 2233.838 kb on - strand, within CCNA_02084 at 2233.840 kb on + strand, within CCNA_02084 at 2233.840 kb on + strand, within CCNA_02084 at 2233.840 kb on + strand, within CCNA_02084 at 2233.840 kb on + strand, within CCNA_02084 at 2233.840 kb on + strand, within CCNA_02084 at 2233.856 kb on + strand, within CCNA_02084 at 2233.856 kb on + strand, within CCNA_02084 at 2233.856 kb on + strand, within CCNA_02084 at 2233.862 kb on - strand, within CCNA_02084 at 2233.876 kb on + strand, within CCNA_02084 at 2233.898 kb on + strand, within CCNA_02084 at 2233.898 kb on + strand, within CCNA_02084 at 2233.906 kb on - strand, within CCNA_02084 at 2233.909 kb on + strand, within CCNA_02084 at 2233.922 kb on - strand, within CCNA_02084 at 2233.994 kb on - strand, within CCNA_02084 at 2234.049 kb on + strand, within CCNA_02084 at 2234.049 kb on + strand, within CCNA_02084 at 2234.057 kb on - strand, within CCNA_02084 at 2234.064 kb on + strand, within CCNA_02084 at 2234.064 kb on + strand, within CCNA_02084 at 2234.072 kb on - strand, within CCNA_02084 at 2234.072 kb on - strand, within CCNA_02084 at 2234.077 kb on - strand, within CCNA_02084 at 2234.090 kb on + strand, within CCNA_02084 at 2234.169 kb on + strand, within CCNA_02084 at 2234.257 kb on + strand, within CCNA_02084 at 2234.260 kb on + strand, within CCNA_02084 at 2234.334 kb on - strand at 2234.395 kb on + strand at 2234.403 kb on - strand at 2234.437 kb on + strand at 2234.445 kb on - strand at 2234.445 kb on - strand at 2234.501 kb on + strand, within CCNA_02085 at 2234.503 kb on - strand, within CCNA_02085 at 2234.538 kb on - strand, within CCNA_02085 at 2234.563 kb on + strand, within CCNA_02085 at 2234.585 kb on - strand, within CCNA_02085 at 2234.610 kb on + strand, within CCNA_02085 at 2234.618 kb on - strand, within CCNA_02085 at 2234.618 kb on - strand, within CCNA_02085 at 2234.620 kb on + strand, within CCNA_02085 at 2234.630 kb on - strand, within CCNA_02085 at 2234.804 kb on - strand, within CCNA_02085 at 2234.809 kb on - strand, within CCNA_02085 at 2234.827 kb on + strand, within CCNA_02085 at 2234.858 kb on - strand, within CCNA_02085 at 2234.914 kb on + strand, within CCNA_02085 at 2234.922 kb on - strand, within CCNA_02085 at 2234.922 kb on - strand, within CCNA_02085 at 2234.939 kb on - strand, within CCNA_02085 at 2235.017 kb on - strand, within CCNA_02085 at 2235.056 kb on + strand, within CCNA_02085 at 2235.063 kb on + strand, within CCNA_02085 at 2235.225 kb on + strand, within CCNA_02085 at 2235.233 kb on - strand, within CCNA_02085 at 2235.279 kb on + strand, within CCNA_02085 at 2235.287 kb on + strand at 2235.292 kb on + strand at 2235.293 kb on - strand at 2235.295 kb on - strand at 2235.302 kb on - strand at 2235.349 kb on + strand at 2235.357 kb on - strand at 2235.357 kb on - strand at 2235.374 kb on + strand at 2236.227 kb on - strand at 2236.237 kb on + strand at 2236.252 kb on + strand at 2236.262 kb on + strand at 2236.265 kb on - strand at 2236.278 kb on + strand at 2236.286 kb on - strand at 2236.286 kb on - strand at 2236.295 kb on - strand at 2236.295 kb on - strand at 2236.310 kb on + strand at 2236.313 kb on + strand at 2236.318 kb on - strand at 2236.345 kb on + strand at 2236.348 kb on - strand at 2236.350 kb on + strand at 2236.368 kb on - strand at 2236.368 kb on - strand at 2236.376 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 2,233,357 + CCNA_02083 0.73 +0.8 2,233,365 - CCNA_02083 0.74 +0.4 2,233,367 + CCNA_02083 0.75 -0.7 2,233,370 - CCNA_02083 0.75 +0.6 2,233,370 - CCNA_02083 0.75 +0.6 2,233,480 + -0.1 2,233,527 - +0.3 2,233,585 - -2.0 2,233,617 + CCNA_02084 0.10 -2.4 2,233,653 - CCNA_02084 0.15 +0.8 2,233,735 + CCNA_02084 0.25 -0.2 2,233,740 + CCNA_02084 0.25 -0.2 2,233,740 + CCNA_02084 0.25 -2.5 2,233,786 + CCNA_02084 0.31 -0.5 2,233,817 - CCNA_02084 0.35 -0.8 2,233,830 + CCNA_02084 0.36 -0.1 2,233,830 + CCNA_02084 0.36 -0.7 2,233,838 - CCNA_02084 0.37 +0.2 2,233,838 - CCNA_02084 0.37 +0.2 2,233,840 + CCNA_02084 0.37 -0.4 2,233,840 + CCNA_02084 0.37 +0.7 2,233,840 + CCNA_02084 0.37 +0.4 2,233,840 + CCNA_02084 0.37 +0.8 2,233,840 + CCNA_02084 0.37 -1.1 2,233,856 + CCNA_02084 0.39 -0.9 2,233,856 + CCNA_02084 0.39 +0.7 2,233,856 + CCNA_02084 0.39 -1.5 2,233,862 - CCNA_02084 0.40 -0.1 2,233,876 + CCNA_02084 0.42 -0.6 2,233,898 + CCNA_02084 0.44 -0.3 2,233,898 + CCNA_02084 0.44 -1.4 2,233,906 - CCNA_02084 0.45 -0.9 2,233,909 + CCNA_02084 0.46 +0.2 2,233,922 - CCNA_02084 0.47 +0.2 2,233,994 - CCNA_02084 0.56 +0.2 2,234,049 + CCNA_02084 0.63 -0.7 2,234,049 + CCNA_02084 0.63 +0.8 2,234,057 - CCNA_02084 0.64 +0.3 2,234,064 + CCNA_02084 0.64 -0.5 2,234,064 + CCNA_02084 0.64 -2.2 2,234,072 - CCNA_02084 0.65 +0.2 2,234,072 - CCNA_02084 0.65 +0.5 2,234,077 - CCNA_02084 0.66 +0.5 2,234,090 + CCNA_02084 0.68 -0.0 2,234,169 + CCNA_02084 0.77 +0.2 2,234,257 + CCNA_02084 0.88 -0.7 2,234,260 + CCNA_02084 0.88 +0.8 2,234,334 - +0.6 2,234,395 + -1.3 2,234,403 - +0.3 2,234,437 + +0.1 2,234,445 - +0.2 2,234,445 - -0.7 2,234,501 + CCNA_02085 0.14 -0.5 2,234,503 - CCNA_02085 0.14 +0.8 2,234,538 - CCNA_02085 0.18 +0.2 2,234,563 + CCNA_02085 0.20 -0.0 2,234,585 - CCNA_02085 0.22 -0.0 2,234,610 + CCNA_02085 0.25 -0.8 2,234,618 - CCNA_02085 0.26 -1.1 2,234,618 - CCNA_02085 0.26 +0.8 2,234,620 + CCNA_02085 0.26 +0.5 2,234,630 - CCNA_02085 0.27 -0.4 2,234,804 - CCNA_02085 0.43 -0.2 2,234,809 - CCNA_02085 0.44 -0.4 2,234,827 + CCNA_02085 0.46 +0.2 2,234,858 - CCNA_02085 0.49 +0.2 2,234,914 + CCNA_02085 0.54 -1.8 2,234,922 - CCNA_02085 0.55 -0.2 2,234,922 - CCNA_02085 0.55 +0.5 2,234,939 - CCNA_02085 0.56 +0.3 2,235,017 - CCNA_02085 0.64 +0.5 2,235,056 + CCNA_02085 0.68 +0.8 2,235,063 + CCNA_02085 0.68 -1.6 2,235,225 + CCNA_02085 0.84 -0.4 2,235,233 - CCNA_02085 0.85 -1.6 2,235,279 + CCNA_02085 0.89 -0.2 2,235,287 + +1.6 2,235,292 + +0.5 2,235,293 - +0.5 2,235,295 - -1.3 2,235,302 - -0.0 2,235,349 + -0.7 2,235,357 - -0.5 2,235,357 - -0.4 2,235,374 + -1.8 2,236,227 - +0.6 2,236,237 + +0.3 2,236,252 + -0.5 2,236,262 + -0.1 2,236,265 - -0.5 2,236,278 + +0.1 2,236,286 - -0.1 2,236,286 - -0.2 2,236,295 - +0.3 2,236,295 - +0.1 2,236,310 + -1.0 2,236,313 + -0.1 2,236,318 - +1.5 2,236,345 + -1.6 2,236,348 - -0.1 2,236,350 + -0.7 2,236,368 - +0.7 2,236,368 - -0.3 2,236,376 - +0.6
Or see this region's nucleotide sequence