Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02064

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02063 and CCNA_02064 are separated by 100 nucleotidesCCNA_02064 and CCNA_02065 are separated by 286 nucleotides CCNA_02063: CCNA_02063 - beta-barrel assembly machine (BAM) protein BamD, at 2,213,567 to 2,214,496 _02063 CCNA_02064: CCNA_02064 - UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase, at 2,214,597 to 2,215,493 _02064 CCNA_02065: CCNA_02065 - acylamino-acid-releasing enzyme, at 2,215,780 to 2,217,882 _02065 Position (kb) 2214 2215 2216Strain fitness (log2 ratio) -1 0 1at 2213.608 kb on - strandat 2213.634 kb on + strandat 2213.682 kb on + strand, within CCNA_02063at 2213.710 kb on + strand, within CCNA_02063at 2214.498 kb on - strandat 2214.523 kb on - strandat 2214.523 kb on - strandat 2214.523 kb on - strandat 2214.523 kb on - strandat 2214.541 kb on - strandat 2214.635 kb on + strandat 2214.635 kb on + strandat 2214.671 kb on - strandat 2214.774 kb on - strand, within CCNA_02064at 2215.162 kb on - strand, within CCNA_02064at 2215.286 kb on - strand, within CCNA_02064at 2215.306 kb on - strand, within CCNA_02064at 2215.501 kb on - strandat 2215.521 kb on + strandat 2215.550 kb on + strandat 2215.558 kb on - strandat 2215.566 kb on - strandat 2215.728 kb on + strandat 2215.728 kb on + strandat 2215.728 kb on + strandat 2215.728 kb on + strandat 2215.736 kb on - strandat 2215.736 kb on - strandat 2215.736 kb on - strandat 2215.736 kb on - strandat 2215.736 kb on - strandat 2215.751 kb on + strandat 2215.819 kb on - strandat 2215.847 kb on + strandat 2215.874 kb on - strandat 2215.908 kb on - strandat 2215.928 kb on - strandat 2215.957 kb on + strandat 2215.957 kb on + strandat 2215.957 kb on + strandat 2215.957 kb on + strandat 2215.960 kb on - strandat 2215.965 kb on - strandat 2215.965 kb on - strandat 2215.965 kb on - strandat 2215.987 kb on + strandat 2216.001 kb on - strand, within CCNA_02065at 2216.003 kb on - strand, within CCNA_02065at 2216.101 kb on + strand, within CCNA_02065at 2216.115 kb on - strand, within CCNA_02065at 2216.151 kb on + strand, within CCNA_02065at 2216.171 kb on - strand, within CCNA_02065at 2216.192 kb on + strand, within CCNA_02065at 2216.192 kb on + strand, within CCNA_02065at 2216.216 kb on + strand, within CCNA_02065at 2216.235 kb on + strand, within CCNA_02065at 2216.258 kb on + strand, within CCNA_02065at 2216.284 kb on - strand, within CCNA_02065at 2216.289 kb on - strand, within CCNA_02065at 2216.325 kb on - strand, within CCNA_02065at 2216.341 kb on + strand, within CCNA_02065at 2216.341 kb on - strand, within CCNA_02065at 2216.341 kb on - strand, within CCNA_02065at 2216.434 kb on + strand, within CCNA_02065at 2216.434 kb on + strand, within CCNA_02065at 2216.453 kb on - strand, within CCNA_02065at 2216.457 kb on + strand, within CCNA_02065

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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2,213,608 - +0.4
2,213,634 + -1.3
2,213,682 + CCNA_02063 0.12 +0.2
2,213,710 + CCNA_02063 0.15 -1.2
2,214,498 - -0.0
2,214,523 - +0.6
2,214,523 - +0.1
2,214,523 - +0.6
2,214,523 - +1.1
2,214,541 - -0.0
2,214,635 + -1.1
2,214,635 + +0.1
2,214,671 - +0.8
2,214,774 - CCNA_02064 0.20 -0.0
2,215,162 - CCNA_02064 0.63 -1.3
2,215,286 - CCNA_02064 0.77 -0.9
2,215,306 - CCNA_02064 0.79 +1.5
2,215,501 - +0.4
2,215,521 + -0.6
2,215,550 + -0.1
2,215,558 - -1.0
2,215,566 - +1.5
2,215,728 + +0.4
2,215,728 + -1.2
2,215,728 + -0.4
2,215,728 + -0.5
2,215,736 - +0.4
2,215,736 - -0.5
2,215,736 - +0.7
2,215,736 - -1.4
2,215,736 - -0.5
2,215,751 + -0.4
2,215,819 - +0.5
2,215,847 + +1.0
2,215,874 - +0.3
2,215,908 - -0.0
2,215,928 - -0.2
2,215,957 + +1.5
2,215,957 + +0.4
2,215,957 + +0.4
2,215,957 + +0.3
2,215,960 - -0.5
2,215,965 - -0.2
2,215,965 - -0.4
2,215,965 - -0.6
2,215,987 + -1.6
2,216,001 - CCNA_02065 0.11 +0.6
2,216,003 - CCNA_02065 0.11 -0.4
2,216,101 + CCNA_02065 0.15 -0.1
2,216,115 - CCNA_02065 0.16 +0.2
2,216,151 + CCNA_02065 0.18 +0.2
2,216,171 - CCNA_02065 0.19 +0.2
2,216,192 + CCNA_02065 0.20 +0.0
2,216,192 + CCNA_02065 0.20 +0.5
2,216,216 + CCNA_02065 0.21 -0.1
2,216,235 + CCNA_02065 0.22 +0.4
2,216,258 + CCNA_02065 0.23 -0.2
2,216,284 - CCNA_02065 0.24 +0.3
2,216,289 - CCNA_02065 0.24 +0.3
2,216,325 - CCNA_02065 0.26 -0.6
2,216,341 + CCNA_02065 0.27 +0.5
2,216,341 - CCNA_02065 0.27 -0.7
2,216,341 - CCNA_02065 0.27 -1.4
2,216,434 + CCNA_02065 0.31 +0.4
2,216,434 + CCNA_02065 0.31 +0.5
2,216,453 - CCNA_02065 0.32 -0.1
2,216,457 + CCNA_02065 0.32 -0.0

Or see this region's nucleotide sequence