Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02061 and CCNA_02062 are separated by 110 nucleotides CCNA_02062 and CCNA_02063 are separated by 82 nucleotides
CCNA_02061: CCNA_02061 - hypothetical protein, at 2,210,438 to 2,211,667
_02061
CCNA_02062: CCNA_02062 - DNA repair protein recN, at 2,211,778 to 2,213,484
_02062
CCNA_02063: CCNA_02063 - beta-barrel assembly machine (BAM) protein BamD, at 2,213,567 to 2,214,496
_02063
Position (kb)
2211
2212
2213
2214 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2210.778 kb on - strand, within CCNA_02061 at 2210.837 kb on - strand, within CCNA_02061 at 2210.839 kb on + strand, within CCNA_02061 at 2210.839 kb on + strand, within CCNA_02061 at 2210.839 kb on + strand, within CCNA_02061 at 2210.847 kb on - strand, within CCNA_02061 at 2210.847 kb on - strand, within CCNA_02061 at 2210.847 kb on - strand, within CCNA_02061 at 2210.862 kb on - strand, within CCNA_02061 at 2211.068 kb on - strand, within CCNA_02061 at 2211.086 kb on + strand, within CCNA_02061 at 2211.111 kb on - strand, within CCNA_02061 at 2211.111 kb on - strand, within CCNA_02061 at 2211.146 kb on + strand, within CCNA_02061 at 2211.154 kb on - strand, within CCNA_02061 at 2211.154 kb on - strand, within CCNA_02061 at 2211.154 kb on - strand, within CCNA_02061 at 2211.198 kb on - strand, within CCNA_02061 at 2211.200 kb on + strand, within CCNA_02061 at 2211.264 kb on - strand, within CCNA_02061 at 2211.316 kb on + strand, within CCNA_02061 at 2211.324 kb on - strand, within CCNA_02061 at 2211.471 kb on + strand, within CCNA_02061 at 2211.471 kb on + strand, within CCNA_02061 at 2211.471 kb on + strand, within CCNA_02061 at 2211.491 kb on + strand, within CCNA_02061 at 2211.573 kb on - strand at 2211.575 kb on + strand at 2211.608 kb on + strand at 2211.616 kb on - strand at 2211.625 kb on + strand at 2211.633 kb on - strand at 2211.663 kb on - strand at 2211.663 kb on - strand at 2211.670 kb on - strand at 2211.672 kb on - strand at 2211.878 kb on + strand at 2211.886 kb on - strand at 2212.054 kb on + strand, within CCNA_02062 at 2212.175 kb on + strand, within CCNA_02062 at 2212.241 kb on + strand, within CCNA_02062 at 2212.322 kb on + strand, within CCNA_02062 at 2212.327 kb on + strand, within CCNA_02062 at 2212.330 kb on - strand, within CCNA_02062 at 2212.449 kb on - strand, within CCNA_02062 at 2212.571 kb on + strand, within CCNA_02062 at 2212.669 kb on - strand, within CCNA_02062 at 2212.692 kb on - strand, within CCNA_02062 at 2212.829 kb on - strand, within CCNA_02062 at 2212.878 kb on + strand, within CCNA_02062 at 2212.886 kb on - strand, within CCNA_02062 at 2212.886 kb on - strand, within CCNA_02062 at 2213.054 kb on + strand, within CCNA_02062 at 2213.054 kb on + strand, within CCNA_02062 at 2213.062 kb on - strand, within CCNA_02062 at 2213.128 kb on - strand, within CCNA_02062 at 2213.130 kb on + strand, within CCNA_02062 at 2213.580 kb on + strand at 2213.586 kb on + strand at 2213.594 kb on - strand at 2213.608 kb on - strand at 2213.634 kb on + strand at 2213.682 kb on + strand, within CCNA_02063 at 2213.710 kb on + strand, within CCNA_02063
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 2,210,778 - CCNA_02061 0.28 +0.2 2,210,837 - CCNA_02061 0.32 -0.6 2,210,839 + CCNA_02061 0.33 +0.1 2,210,839 + CCNA_02061 0.33 +0.9 2,210,839 + CCNA_02061 0.33 +0.1 2,210,847 - CCNA_02061 0.33 +0.3 2,210,847 - CCNA_02061 0.33 +2.1 2,210,847 - CCNA_02061 0.33 +0.5 2,210,862 - CCNA_02061 0.34 -0.1 2,211,068 - CCNA_02061 0.51 +0.1 2,211,086 + CCNA_02061 0.53 +1.2 2,211,111 - CCNA_02061 0.55 -0.1 2,211,111 - CCNA_02061 0.55 +0.1 2,211,146 + CCNA_02061 0.58 -0.0 2,211,154 - CCNA_02061 0.58 -1.0 2,211,154 - CCNA_02061 0.58 +0.4 2,211,154 - CCNA_02061 0.58 +0.2 2,211,198 - CCNA_02061 0.62 +0.3 2,211,200 + CCNA_02061 0.62 +0.9 2,211,264 - CCNA_02061 0.67 -0.2 2,211,316 + CCNA_02061 0.71 -0.2 2,211,324 - CCNA_02061 0.72 -0.3 2,211,471 + CCNA_02061 0.84 +1.2 2,211,471 + CCNA_02061 0.84 -0.6 2,211,471 + CCNA_02061 0.84 +0.1 2,211,491 + CCNA_02061 0.86 +0.5 2,211,573 - +0.4 2,211,575 + -0.6 2,211,608 + +2.5 2,211,616 - -0.1 2,211,625 + +0.3 2,211,633 - -0.4 2,211,663 - +0.0 2,211,663 - +0.2 2,211,670 - -0.2 2,211,672 - -0.4 2,211,878 + +0.5 2,211,886 - +0.5 2,212,054 + CCNA_02062 0.16 -2.0 2,212,175 + CCNA_02062 0.23 +0.0 2,212,241 + CCNA_02062 0.27 +0.2 2,212,322 + CCNA_02062 0.32 -0.5 2,212,327 + CCNA_02062 0.32 -1.1 2,212,330 - CCNA_02062 0.32 +1.0 2,212,449 - CCNA_02062 0.39 -0.4 2,212,571 + CCNA_02062 0.46 +0.8 2,212,669 - CCNA_02062 0.52 -0.2 2,212,692 - CCNA_02062 0.54 -2.9 2,212,829 - CCNA_02062 0.62 +0.5 2,212,878 + CCNA_02062 0.64 +0.3 2,212,886 - CCNA_02062 0.65 +1.5 2,212,886 - CCNA_02062 0.65 -1.2 2,213,054 + CCNA_02062 0.75 +1.0 2,213,054 + CCNA_02062 0.75 +0.6 2,213,062 - CCNA_02062 0.75 -1.1 2,213,128 - CCNA_02062 0.79 +0.2 2,213,130 + CCNA_02062 0.79 -0.8 2,213,580 + -0.4 2,213,586 + -0.2 2,213,594 - +0.6 2,213,608 - +0.4 2,213,634 + -1.3 2,213,682 + CCNA_02063 0.12 +0.2 2,213,710 + CCNA_02063 0.15 -1.2
Or see this region's nucleotide sequence