Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02040

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_02039 and CCNA_02040 are separated by 335 nucleotidesCCNA_02040 and CCNA_02041 are separated by 78 nucleotidesCCNA_02041 and CCNA_02042 are separated by 168 nucleotides CCNA_02039: CCNA_02039 - ATP-dependent endopeptidase clp, ATP-binding subunit ClpX, at 2,183,866 to 2,185,128 _02039 CCNA_02040: CCNA_02040 - phosphoserine phosphatase, at 2,185,464 to 2,186,132 _02040 CCNA_02041: CCNA_02041 - ATP-dependent endopeptidase clp, proteolytic subunit ClpP, at 2,186,211 to 2,186,852 _02041 CCNA_02042: CCNA_02042 - trigger factor chaperone, at 2,187,021 to 2,188,385 _02042 Position (kb) 2185 2186 2187Strain fitness (log2 ratio) -1 0 1 2 3at 2185.178 kb on - strandat 2185.212 kb on - strandat 2185.214 kb on - strandat 2185.235 kb on - strandat 2185.240 kb on - strandat 2185.280 kb on - strandat 2185.316 kb on + strandat 2185.334 kb on + strandat 2185.372 kb on + strandat 2185.394 kb on - strandat 2185.400 kb on + strandat 2185.409 kb on - strandat 2185.438 kb on + strandat 2185.446 kb on - strandat 2185.484 kb on + strandat 2185.498 kb on - strandat 2185.549 kb on - strand, within CCNA_02040at 2186.208 kb on + strandat 2186.208 kb on + strandat 2186.208 kb on + strandat 2186.216 kb on - strandat 2186.216 kb on - strandat 2186.216 kb on - strandat 2186.216 kb on - strandat 2186.907 kb on - strandat 2186.923 kb on + strandat 2186.931 kb on - strandat 2186.931 kb on - strandat 2186.931 kb on - strandat 2186.931 kb on - strandat 2186.931 kb on - strandat 2187.099 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
remove
2,185,178 - +0.8
2,185,212 - +0.9
2,185,214 - +0.6
2,185,235 - +0.5
2,185,240 - +0.5
2,185,280 - +0.7
2,185,316 + +0.5
2,185,334 + +0.2
2,185,372 + +0.6
2,185,394 - +1.2
2,185,400 + -0.9
2,185,409 - +0.8
2,185,438 + +0.4
2,185,446 - +1.0
2,185,484 + -0.0
2,185,498 - +0.9
2,185,549 - CCNA_02040 0.13 -0.7
2,186,208 + -0.4
2,186,208 + -0.4
2,186,208 + -0.6
2,186,216 - +0.2
2,186,216 - +3.7
2,186,216 - -0.3
2,186,216 - +0.1
2,186,907 - +0.7
2,186,923 + -0.0
2,186,931 - +1.2
2,186,931 - +0.3
2,186,931 - +0.1
2,186,931 - -0.1
2,186,931 - +0.4
2,187,099 - +0.7

Or see this region's nucleotide sequence