Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01988

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01986 and CCNA_01987 overlap by 4 nucleotidesCCNA_01987 and CCNA_01988 are separated by 9 nucleotidesCCNA_01988 and CCNA_01989 overlap by 4 nucleotidesCCNA_01989 and CCNA_01990 are separated by 2 nucleotides CCNA_01986: CCNA_01986 - lipid-A-disaccharide synthase, at 2,132,287 to 2,133,483 _01986 CCNA_01987: CCNA_01987 - UDP-2,3-diacylglucosamine pyrophosphatase LpxI, at 2,133,480 to 2,134,322 _01987 CCNA_01988: CCNA_01988 - UDP-N-acetylglucosamine O-acyltransferase LpxA, at 2,134,332 to 2,135,123 _01988 CCNA_01989: CCNA_01989 - (3R)-hydroxymyristoyl-ACP dehydratase FabZ, at 2,135,120 to 2,135,599 _01989 CCNA_01990: CCNA_01990 - UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase LpxD, at 2,135,602 to 2,136,621 _01990 Position (kb) 2134 2135 2136Strain fitness (log2 ratio) -1 0 1 2at 2134.320 kb on - strandat 2134.329 kb on + strandat 2134.560 kb on - strand, within CCNA_01988at 2134.608 kb on - strand, within CCNA_01988at 2134.648 kb on + strand, within CCNA_01988at 2134.804 kb on - strand, within CCNA_01988at 2134.819 kb on + strand, within CCNA_01988at 2135.017 kb on + strand, within CCNA_01988at 2135.134 kb on - strandat 2135.804 kb on - strand, within CCNA_01990at 2135.885 kb on + strand, within CCNA_01990

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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2,134,320 - -0.0
2,134,329 + +2.1
2,134,560 - CCNA_01988 0.29 -0.1
2,134,608 - CCNA_01988 0.35 -0.5
2,134,648 + CCNA_01988 0.40 +0.3
2,134,804 - CCNA_01988 0.60 +0.5
2,134,819 + CCNA_01988 0.61 -0.1
2,135,017 + CCNA_01988 0.86 -0.7
2,135,134 - +0.5
2,135,804 - CCNA_01990 0.20 +0.5
2,135,885 + CCNA_01990 0.28 -0.5

Or see this region's nucleotide sequence