Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01986 and CCNA_01987 overlap by 4 nucleotides CCNA_01987 and CCNA_01988 are separated by 9 nucleotides CCNA_01988 and CCNA_01989 overlap by 4 nucleotides CCNA_01989 and CCNA_01990 are separated by 2 nucleotides
CCNA_01986: CCNA_01986 - lipid-A-disaccharide synthase, at 2,132,287 to 2,133,483
_01986
CCNA_01987: CCNA_01987 - UDP-2,3-diacylglucosamine pyrophosphatase LpxI, at 2,133,480 to 2,134,322
_01987
CCNA_01988: CCNA_01988 - UDP-N-acetylglucosamine O-acyltransferase LpxA, at 2,134,332 to 2,135,123
_01988
CCNA_01989: CCNA_01989 - (3R)-hydroxymyristoyl-ACP dehydratase FabZ, at 2,135,120 to 2,135,599
_01989
CCNA_01990: CCNA_01990 - UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase LpxD, at 2,135,602 to 2,136,621
_01990
Position (kb)
2134
2135
2136 Strain fitness (log2 ratio)
-1
0
1
2 at 2134.320 kb on - strand at 2134.329 kb on + strand at 2134.560 kb on - strand, within CCNA_01988 at 2134.608 kb on - strand, within CCNA_01988 at 2134.648 kb on + strand, within CCNA_01988 at 2134.804 kb on - strand, within CCNA_01988 at 2134.819 kb on + strand, within CCNA_01988 at 2135.017 kb on + strand, within CCNA_01988 at 2135.134 kb on - strand at 2135.804 kb on - strand, within CCNA_01990 at 2135.885 kb on + strand, within CCNA_01990
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 2,134,320 - -0.0 2,134,329 + +2.1 2,134,560 - CCNA_01988 0.29 -0.1 2,134,608 - CCNA_01988 0.35 -0.5 2,134,648 + CCNA_01988 0.40 +0.3 2,134,804 - CCNA_01988 0.60 +0.5 2,134,819 + CCNA_01988 0.61 -0.1 2,135,017 + CCNA_01988 0.86 -0.7 2,135,134 - +0.5 2,135,804 - CCNA_01990 0.20 +0.5 2,135,885 + CCNA_01990 0.28 -0.5
Or see this region's nucleotide sequence