Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01906 and CCNA_01907 are separated by 40 nucleotides CCNA_01907 and CCNA_01908 overlap by 1 nucleotides CCNA_01908 and CCNA_01909 are separated by 55 nucleotides
CCNA_01906: CCNA_01906 - allophanate hydrolase, at 2,050,519 to 2,052,303
_01906
CCNA_01907: CCNA_01907 - ABC transporter ATP-binding protein, at 2,052,344 to 2,053,105
_01907
CCNA_01908: CCNA_01908 - ABC-type transporter, permease component, at 2,053,105 to 2,053,920
_01908
CCNA_01909: CCNA_01909 - ABC transporter substrate-binding protein, at 2,053,976 to 2,055,085
_01909
Position (kb)
2053
2054 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2052.140 kb on - strand at 2052.182 kb on - strand at 2052.183 kb on - strand at 2052.187 kb on - strand at 2052.193 kb on - strand at 2052.232 kb on + strand at 2052.267 kb on - strand at 2052.267 kb on - strand at 2052.284 kb on - strand at 2052.292 kb on + strand at 2052.292 kb on + strand at 2052.305 kb on - strand at 2052.333 kb on + strand at 2052.333 kb on + strand at 2052.341 kb on - strand at 2052.341 kb on - strand at 2052.341 kb on - strand at 2052.382 kb on + strand at 2052.404 kb on + strand at 2052.412 kb on - strand at 2052.412 kb on - strand at 2052.448 kb on - strand, within CCNA_01907 at 2052.487 kb on + strand, within CCNA_01907 at 2052.495 kb on - strand, within CCNA_01907 at 2052.495 kb on - strand, within CCNA_01907 at 2052.508 kb on + strand, within CCNA_01907 at 2052.535 kb on - strand, within CCNA_01907 at 2052.567 kb on + strand, within CCNA_01907 at 2052.597 kb on - strand, within CCNA_01907 at 2052.607 kb on - strand, within CCNA_01907 at 2052.701 kb on - strand, within CCNA_01907 at 2052.720 kb on - strand, within CCNA_01907 at 2052.726 kb on - strand, within CCNA_01907 at 2052.749 kb on + strand, within CCNA_01907 at 2052.749 kb on + strand, within CCNA_01907 at 2052.757 kb on - strand, within CCNA_01907 at 2052.757 kb on - strand, within CCNA_01907 at 2052.757 kb on - strand, within CCNA_01907 at 2052.757 kb on - strand, within CCNA_01907 at 2052.757 kb on - strand, within CCNA_01907 at 2052.757 kb on - strand, within CCNA_01907 at 2052.757 kb on - strand, within CCNA_01907 at 2052.772 kb on - strand, within CCNA_01907 at 2052.788 kb on + strand, within CCNA_01907 at 2052.814 kb on + strand, within CCNA_01907 at 2052.825 kb on + strand, within CCNA_01907 at 2052.909 kb on + strand, within CCNA_01907 at 2052.909 kb on + strand, within CCNA_01907 at 2052.916 kb on + strand, within CCNA_01907 at 2052.917 kb on - strand, within CCNA_01907 at 2052.917 kb on - strand, within CCNA_01907 at 2052.917 kb on - strand, within CCNA_01907 at 2052.917 kb on - strand, within CCNA_01907 at 2052.938 kb on + strand, within CCNA_01907 at 2052.939 kb on - strand, within CCNA_01907 at 2053.019 kb on + strand, within CCNA_01907 at 2053.022 kb on - strand, within CCNA_01907 at 2053.074 kb on + strand at 2053.101 kb on + strand at 2053.126 kb on + strand at 2053.126 kb on + strand at 2053.134 kb on - strand at 2053.158 kb on + strand at 2053.158 kb on - strand at 2053.187 kb on + strand, within CCNA_01908 at 2053.228 kb on - strand, within CCNA_01908 at 2053.240 kb on + strand, within CCNA_01908 at 2053.284 kb on + strand, within CCNA_01908 at 2053.292 kb on - strand, within CCNA_01908 at 2053.293 kb on + strand, within CCNA_01908 at 2053.312 kb on - strand, within CCNA_01908 at 2053.373 kb on - strand, within CCNA_01908 at 2053.399 kb on - strand, within CCNA_01908 at 2053.406 kb on + strand, within CCNA_01908 at 2053.414 kb on - strand, within CCNA_01908 at 2053.414 kb on - strand, within CCNA_01908 at 2053.414 kb on - strand, within CCNA_01908 at 2053.434 kb on - strand, within CCNA_01908 at 2053.487 kb on + strand, within CCNA_01908 at 2053.521 kb on + strand, within CCNA_01908 at 2053.532 kb on + strand, within CCNA_01908 at 2053.592 kb on - strand, within CCNA_01908 at 2053.597 kb on - strand, within CCNA_01908 at 2053.623 kb on - strand, within CCNA_01908 at 2053.628 kb on - strand, within CCNA_01908 at 2053.634 kb on - strand, within CCNA_01908 at 2053.668 kb on + strand, within CCNA_01908 at 2053.674 kb on + strand, within CCNA_01908 at 2053.716 kb on + strand, within CCNA_01908 at 2053.750 kb on + strand, within CCNA_01908 at 2053.781 kb on - strand, within CCNA_01908 at 2053.845 kb on - strand at 2053.850 kb on + strand at 2053.873 kb on + strand at 2053.876 kb on - strand at 2053.881 kb on - strand at 2053.922 kb on + strand at 2053.936 kb on - strand at 2053.974 kb on - strand at 2053.982 kb on - strand at 2054.031 kb on + strand at 2054.036 kb on + strand at 2054.053 kb on - strand at 2054.080 kb on - strand at 2054.081 kb on + strand at 2054.092 kb on + strand, within CCNA_01909 at 2054.113 kb on + strand, within CCNA_01909 at 2054.129 kb on + strand, within CCNA_01909 at 2054.161 kb on + strand, within CCNA_01909 at 2054.161 kb on + strand, within CCNA_01909 at 2054.161 kb on + strand, within CCNA_01909 at 2054.161 kb on + strand, within CCNA_01909 at 2054.164 kb on - strand, within CCNA_01909 at 2054.169 kb on - strand, within CCNA_01909 at 2054.169 kb on - strand, within CCNA_01909 at 2054.169 kb on - strand, within CCNA_01909 at 2054.169 kb on - strand, within CCNA_01909 at 2054.190 kb on + strand, within CCNA_01909 at 2054.198 kb on - strand, within CCNA_01909 at 2054.198 kb on - strand, within CCNA_01909 at 2054.198 kb on - strand, within CCNA_01909 at 2054.198 kb on - strand, within CCNA_01909 at 2054.202 kb on + strand, within CCNA_01909 at 2054.207 kb on + strand, within CCNA_01909 at 2054.207 kb on + strand, within CCNA_01909 at 2054.217 kb on + strand, within CCNA_01909 at 2054.240 kb on + strand, within CCNA_01909 at 2054.261 kb on - strand, within CCNA_01909 at 2054.267 kb on - strand, within CCNA_01909 at 2054.280 kb on - strand, within CCNA_01909 at 2054.283 kb on + strand, within CCNA_01909 at 2054.283 kb on + strand, within CCNA_01909 at 2054.283 kb on + strand, within CCNA_01909 at 2054.283 kb on + strand, within CCNA_01909 at 2054.288 kb on + strand, within CCNA_01909 at 2054.291 kb on - strand, within CCNA_01909 at 2054.291 kb on - strand, within CCNA_01909 at 2054.348 kb on - strand, within CCNA_01909 at 2054.349 kb on + strand, within CCNA_01909 at 2054.354 kb on - strand, within CCNA_01909 at 2054.356 kb on + strand, within CCNA_01909 at 2054.364 kb on - strand, within CCNA_01909 at 2054.374 kb on - strand, within CCNA_01909 at 2054.375 kb on - strand, within CCNA_01909 at 2054.382 kb on - strand, within CCNA_01909 at 2054.389 kb on + strand, within CCNA_01909 at 2054.389 kb on + strand, within CCNA_01909 at 2054.397 kb on - strand, within CCNA_01909 at 2054.397 kb on - strand, within CCNA_01909 at 2054.407 kb on - strand, within CCNA_01909 at 2054.437 kb on - strand, within CCNA_01909 at 2054.437 kb on - strand, within CCNA_01909 at 2054.456 kb on - strand, within CCNA_01909 at 2054.464 kb on + strand, within CCNA_01909 at 2054.496 kb on + strand, within CCNA_01909 at 2054.501 kb on + strand, within CCNA_01909 at 2054.501 kb on + strand, within CCNA_01909 at 2054.509 kb on - strand, within CCNA_01909 at 2054.509 kb on - strand, within CCNA_01909 at 2054.509 kb on - strand, within CCNA_01909 at 2054.544 kb on + strand, within CCNA_01909 at 2054.551 kb on - strand, within CCNA_01909 at 2054.569 kb on + strand, within CCNA_01909 at 2054.617 kb on - strand, within CCNA_01909 at 2054.662 kb on + strand, within CCNA_01909 at 2054.665 kb on - strand, within CCNA_01909 at 2054.683 kb on - strand, within CCNA_01909 at 2054.725 kb on - strand, within CCNA_01909 at 2054.727 kb on + strand, within CCNA_01909 at 2054.732 kb on + strand, within CCNA_01909 at 2054.755 kb on + strand, within CCNA_01909 at 2054.757 kb on + strand, within CCNA_01909 at 2054.771 kb on + strand, within CCNA_01909 at 2054.787 kb on + strand, within CCNA_01909 at 2054.787 kb on + strand, within CCNA_01909 at 2054.787 kb on - strand, within CCNA_01909 at 2054.810 kb on - strand, within CCNA_01909 at 2054.840 kb on - strand, within CCNA_01909 at 2054.848 kb on + strand, within CCNA_01909 at 2054.877 kb on - strand, within CCNA_01909 at 2054.899 kb on + strand, within CCNA_01909 at 2054.902 kb on + strand, within CCNA_01909 at 2054.909 kb on + strand, within CCNA_01909 at 2054.909 kb on + strand, within CCNA_01909 at 2054.910 kb on - strand, within CCNA_01909 at 2054.917 kb on - strand, within CCNA_01909 at 2054.917 kb on - strand, within CCNA_01909
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 2,052,140 - -0.7 2,052,182 - -1.3 2,052,183 - -1.4 2,052,187 - +1.5 2,052,193 - -0.8 2,052,232 + -0.8 2,052,267 - +0.7 2,052,267 - -0.3 2,052,284 - -1.4 2,052,292 + -1.7 2,052,292 + +0.8 2,052,305 - +1.2 2,052,333 + +0.5 2,052,333 + -0.2 2,052,341 - -0.3 2,052,341 - -0.3 2,052,341 - +2.1 2,052,382 + +1.2 2,052,404 + -0.6 2,052,412 - +0.7 2,052,412 - -1.2 2,052,448 - CCNA_01907 0.14 -0.7 2,052,487 + CCNA_01907 0.19 -0.9 2,052,495 - CCNA_01907 0.20 -0.1 2,052,495 - CCNA_01907 0.20 -0.3 2,052,508 + CCNA_01907 0.22 -0.4 2,052,535 - CCNA_01907 0.25 +0.5 2,052,567 + CCNA_01907 0.29 -0.7 2,052,597 - CCNA_01907 0.33 +0.1 2,052,607 - CCNA_01907 0.35 -0.4 2,052,701 - CCNA_01907 0.47 -1.4 2,052,720 - CCNA_01907 0.49 -1.9 2,052,726 - CCNA_01907 0.50 -0.3 2,052,749 + CCNA_01907 0.53 +0.5 2,052,749 + CCNA_01907 0.53 -0.6 2,052,757 - CCNA_01907 0.54 +0.4 2,052,757 - CCNA_01907 0.54 +0.2 2,052,757 - CCNA_01907 0.54 -1.6 2,052,757 - CCNA_01907 0.54 -2.1 2,052,757 - CCNA_01907 0.54 -1.2 2,052,757 - CCNA_01907 0.54 +0.4 2,052,757 - CCNA_01907 0.54 +0.6 2,052,772 - CCNA_01907 0.56 +1.0 2,052,788 + CCNA_01907 0.58 -1.5 2,052,814 + CCNA_01907 0.62 -0.8 2,052,825 + CCNA_01907 0.63 -1.9 2,052,909 + CCNA_01907 0.74 +0.9 2,052,909 + CCNA_01907 0.74 +1.1 2,052,916 + CCNA_01907 0.75 +0.6 2,052,917 - CCNA_01907 0.75 -1.3 2,052,917 - CCNA_01907 0.75 -0.4 2,052,917 - CCNA_01907 0.75 -0.7 2,052,917 - CCNA_01907 0.75 -0.6 2,052,938 + CCNA_01907 0.78 +0.7 2,052,939 - CCNA_01907 0.78 -1.2 2,053,019 + CCNA_01907 0.89 -1.9 2,053,022 - CCNA_01907 0.89 -0.2 2,053,074 + -0.0 2,053,101 + -0.3 2,053,126 + +1.0 2,053,126 + -1.8 2,053,134 - +0.6 2,053,158 + +0.3 2,053,158 - -0.5 2,053,187 + CCNA_01908 0.10 -0.5 2,053,228 - CCNA_01908 0.15 -0.9 2,053,240 + CCNA_01908 0.17 +0.4 2,053,284 + CCNA_01908 0.22 -0.4 2,053,292 - CCNA_01908 0.23 +0.7 2,053,293 + CCNA_01908 0.23 +0.5 2,053,312 - CCNA_01908 0.25 -0.3 2,053,373 - CCNA_01908 0.33 -0.1 2,053,399 - CCNA_01908 0.36 +0.4 2,053,406 + CCNA_01908 0.37 -0.5 2,053,414 - CCNA_01908 0.38 -0.4 2,053,414 - CCNA_01908 0.38 -0.5 2,053,414 - CCNA_01908 0.38 -1.2 2,053,434 - CCNA_01908 0.40 +0.6 2,053,487 + CCNA_01908 0.47 -0.1 2,053,521 + CCNA_01908 0.51 +0.8 2,053,532 + CCNA_01908 0.52 +0.1 2,053,592 - CCNA_01908 0.60 -0.7 2,053,597 - CCNA_01908 0.60 +1.3 2,053,623 - CCNA_01908 0.63 -1.2 2,053,628 - CCNA_01908 0.64 -0.2 2,053,634 - CCNA_01908 0.65 +0.9 2,053,668 + CCNA_01908 0.69 +0.9 2,053,674 + CCNA_01908 0.70 -1.4 2,053,716 + CCNA_01908 0.75 -1.3 2,053,750 + CCNA_01908 0.79 -0.9 2,053,781 - CCNA_01908 0.83 +0.3 2,053,845 - +1.5 2,053,850 + +0.7 2,053,873 + +0.6 2,053,876 - +0.1 2,053,881 - -1.8 2,053,922 + -0.9 2,053,936 - -0.4 2,053,974 - -0.3 2,053,982 - +0.6 2,054,031 + +0.6 2,054,036 + -0.7 2,054,053 - -1.6 2,054,080 - -0.2 2,054,081 + -1.2 2,054,092 + CCNA_01909 0.10 +0.9 2,054,113 + CCNA_01909 0.12 -1.8 2,054,129 + CCNA_01909 0.14 -1.5 2,054,161 + CCNA_01909 0.17 -0.3 2,054,161 + CCNA_01909 0.17 -0.0 2,054,161 + CCNA_01909 0.17 -0.2 2,054,161 + CCNA_01909 0.17 -0.3 2,054,164 - CCNA_01909 0.17 +0.7 2,054,169 - CCNA_01909 0.17 -1.0 2,054,169 - CCNA_01909 0.17 +0.9 2,054,169 - CCNA_01909 0.17 +0.4 2,054,169 - CCNA_01909 0.17 -1.3 2,054,190 + CCNA_01909 0.19 +1.6 2,054,198 - CCNA_01909 0.20 -1.0 2,054,198 - CCNA_01909 0.20 -1.5 2,054,198 - CCNA_01909 0.20 +1.1 2,054,198 - CCNA_01909 0.20 -1.0 2,054,202 + CCNA_01909 0.20 -0.9 2,054,207 + CCNA_01909 0.21 -1.2 2,054,207 + CCNA_01909 0.21 +0.0 2,054,217 + CCNA_01909 0.22 -2.1 2,054,240 + CCNA_01909 0.24 -0.5 2,054,261 - CCNA_01909 0.26 +0.0 2,054,267 - CCNA_01909 0.26 -1.2 2,054,280 - CCNA_01909 0.27 -0.8 2,054,283 + CCNA_01909 0.28 +1.5 2,054,283 + CCNA_01909 0.28 -0.6 2,054,283 + CCNA_01909 0.28 +0.6 2,054,283 + CCNA_01909 0.28 -1.0 2,054,288 + CCNA_01909 0.28 +0.6 2,054,291 - CCNA_01909 0.28 -0.8 2,054,291 - CCNA_01909 0.28 -2.0 2,054,348 - CCNA_01909 0.34 -1.5 2,054,349 + CCNA_01909 0.34 +0.1 2,054,354 - CCNA_01909 0.34 -0.1 2,054,356 + CCNA_01909 0.34 -0.9 2,054,364 - CCNA_01909 0.35 +0.2 2,054,374 - CCNA_01909 0.36 +1.2 2,054,375 - CCNA_01909 0.36 -1.3 2,054,382 - CCNA_01909 0.37 +0.4 2,054,389 + CCNA_01909 0.37 -0.2 2,054,389 + CCNA_01909 0.37 -2.3 2,054,397 - CCNA_01909 0.38 -0.1 2,054,397 - CCNA_01909 0.38 +1.3 2,054,407 - CCNA_01909 0.39 -0.9 2,054,437 - CCNA_01909 0.42 -1.2 2,054,437 - CCNA_01909 0.42 -0.9 2,054,456 - CCNA_01909 0.43 +0.9 2,054,464 + CCNA_01909 0.44 -0.0 2,054,496 + CCNA_01909 0.47 -2.0 2,054,501 + CCNA_01909 0.47 -1.0 2,054,501 + CCNA_01909 0.47 -0.6 2,054,509 - CCNA_01909 0.48 -0.4 2,054,509 - CCNA_01909 0.48 -0.1 2,054,509 - CCNA_01909 0.48 -0.7 2,054,544 + CCNA_01909 0.51 +0.9 2,054,551 - CCNA_01909 0.52 -1.0 2,054,569 + CCNA_01909 0.53 -0.3 2,054,617 - CCNA_01909 0.58 -0.2 2,054,662 + CCNA_01909 0.62 +0.5 2,054,665 - CCNA_01909 0.62 -1.6 2,054,683 - CCNA_01909 0.64 -1.1 2,054,725 - CCNA_01909 0.67 -0.2 2,054,727 + CCNA_01909 0.68 -2.0 2,054,732 + CCNA_01909 0.68 -0.9 2,054,755 + CCNA_01909 0.70 -1.4 2,054,757 + CCNA_01909 0.70 -1.3 2,054,771 + CCNA_01909 0.72 +1.0 2,054,787 + CCNA_01909 0.73 -0.3 2,054,787 + CCNA_01909 0.73 +0.0 2,054,787 - CCNA_01909 0.73 +0.6 2,054,810 - CCNA_01909 0.75 -0.1 2,054,840 - CCNA_01909 0.78 +0.5 2,054,848 + CCNA_01909 0.79 -0.7 2,054,877 - CCNA_01909 0.81 -0.8 2,054,899 + CCNA_01909 0.83 +1.1 2,054,902 + CCNA_01909 0.83 -0.1 2,054,909 + CCNA_01909 0.84 -0.5 2,054,909 + CCNA_01909 0.84 -3.2 2,054,910 - CCNA_01909 0.84 -1.8 2,054,917 - CCNA_01909 0.85 -0.4 2,054,917 - CCNA_01909 0.85 +0.1
Or see this region's nucleotide sequence