Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01880

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01879 and CCNA_01880 are separated by 76 nucleotidesCCNA_01880 and CCNA_01881 overlap by 4 nucleotidesCCNA_01881 and CCNA_01882 overlap by 4 nucleotides CCNA_01879: CCNA_01879 - NADH:flavin oxidoreductases, old yellow enzyme family, at 2,018,600 to 2,019,703 _01879 CCNA_01880: CCNA_01880 - 3-ketoacyl-(acyl-carrier-protein) reductase FabG, at 2,019,780 to 2,020,523 _01880 CCNA_01881: CCNA_01881 - NAD-binding Rossmann superfamily protein, at 2,020,520 to 2,021,158 _01881 CCNA_01882: CCNA_01882 - SMP-30/gluconolaconase/LRE-like protein, at 2,021,155 to 2,022,036 _01882 Position (kb) 2019 2020 2021Strain fitness (log2 ratio) -2 -1 0 1at 2018.784 kb on - strand, within CCNA_01879at 2019.041 kb on + strand, within CCNA_01879at 2019.052 kb on + strand, within CCNA_01879at 2019.054 kb on - strand, within CCNA_01879at 2019.054 kb on - strand, within CCNA_01879at 2019.054 kb on - strand, within CCNA_01879at 2019.060 kb on - strand, within CCNA_01879at 2019.108 kb on - strand, within CCNA_01879at 2019.214 kb on + strand, within CCNA_01879at 2019.214 kb on + strand, within CCNA_01879at 2019.214 kb on + strand, within CCNA_01879at 2019.215 kb on + strand, within CCNA_01879at 2019.222 kb on - strand, within CCNA_01879at 2019.274 kb on + strand, within CCNA_01879at 2019.314 kb on + strand, within CCNA_01879at 2019.365 kb on + strand, within CCNA_01879at 2019.373 kb on - strand, within CCNA_01879at 2019.451 kb on - strand, within CCNA_01879at 2019.460 kb on + strand, within CCNA_01879at 2019.563 kb on + strand, within CCNA_01879at 2019.563 kb on + strand, within CCNA_01879at 2019.611 kb on - strandat 2019.622 kb on + strandat 2019.627 kb on + strandat 2019.635 kb on - strandat 2019.685 kb on + strandat 2019.713 kb on + strandat 2019.773 kb on - strandat 2019.818 kb on - strandat 2019.836 kb on - strandat 2019.874 kb on + strand, within CCNA_01880at 2019.882 kb on - strand, within CCNA_01880at 2019.925 kb on + strand, within CCNA_01880at 2019.995 kb on + strand, within CCNA_01880at 2020.002 kb on + strand, within CCNA_01880at 2020.003 kb on - strand, within CCNA_01880at 2020.010 kb on - strand, within CCNA_01880at 2020.021 kb on - strand, within CCNA_01880at 2020.049 kb on + strand, within CCNA_01880at 2020.059 kb on + strand, within CCNA_01880at 2020.067 kb on - strand, within CCNA_01880at 2020.087 kb on - strand, within CCNA_01880at 2020.092 kb on + strand, within CCNA_01880at 2020.100 kb on - strand, within CCNA_01880at 2020.100 kb on - strand, within CCNA_01880at 2020.100 kb on - strand, within CCNA_01880at 2020.111 kb on - strand, within CCNA_01880at 2020.238 kb on + strand, within CCNA_01880at 2020.238 kb on + strand, within CCNA_01880at 2020.238 kb on + strand, within CCNA_01880at 2020.246 kb on - strand, within CCNA_01880at 2020.246 kb on - strand, within CCNA_01880at 2020.294 kb on - strand, within CCNA_01880at 2020.389 kb on - strand, within CCNA_01880at 2020.394 kb on - strand, within CCNA_01880at 2020.403 kb on + strand, within CCNA_01880at 2020.457 kb on - strandat 2020.525 kb on - strandat 2020.535 kb on - strandat 2020.577 kb on + strandat 2020.616 kb on + strand, within CCNA_01881at 2020.621 kb on + strand, within CCNA_01881at 2020.775 kb on + strand, within CCNA_01881at 2020.775 kb on + strand, within CCNA_01881at 2020.795 kb on - strand, within CCNA_01881at 2020.795 kb on - strand, within CCNA_01881at 2020.795 kb on - strand, within CCNA_01881at 2020.908 kb on + strand, within CCNA_01881at 2020.914 kb on + strand, within CCNA_01881at 2020.931 kb on - strand, within CCNA_01881at 2020.955 kb on + strand, within CCNA_01881at 2020.955 kb on + strand, within CCNA_01881at 2020.955 kb on + strand, within CCNA_01881at 2020.955 kb on + strand, within CCNA_01881at 2020.963 kb on - strand, within CCNA_01881at 2020.963 kb on - strand, within CCNA_01881at 2020.964 kb on - strand, within CCNA_01881at 2020.964 kb on - strand, within CCNA_01881at 2020.964 kb on - strand, within CCNA_01881at 2020.968 kb on - strand, within CCNA_01881at 2021.076 kb on + strand, within CCNA_01881at 2021.082 kb on + strand, within CCNA_01881at 2021.099 kb on + strandat 2021.152 kb on + strandat 2021.160 kb on - strandat 2021.225 kb on + strandat 2021.233 kb on - strandat 2021.233 kb on - strandat 2021.252 kb on + strand, within CCNA_01882at 2021.260 kb on - strand, within CCNA_01882at 2021.313 kb on + strand, within CCNA_01882at 2021.335 kb on + strand, within CCNA_01882at 2021.343 kb on - strand, within CCNA_01882at 2021.343 kb on - strand, within CCNA_01882at 2021.343 kb on - strand, within CCNA_01882at 2021.392 kb on + strand, within CCNA_01882at 2021.435 kb on + strand, within CCNA_01882at 2021.446 kb on + strand, within CCNA_01882at 2021.463 kb on + strand, within CCNA_01882at 2021.463 kb on + strand, within CCNA_01882at 2021.463 kb on + strand, within CCNA_01882

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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2,018,784 - CCNA_01879 0.17 -1.2
2,019,041 + CCNA_01879 0.40 -1.6
2,019,052 + CCNA_01879 0.41 -1.2
2,019,054 - CCNA_01879 0.41 -0.6
2,019,054 - CCNA_01879 0.41 -1.2
2,019,054 - CCNA_01879 0.41 -0.6
2,019,060 - CCNA_01879 0.42 -0.3
2,019,108 - CCNA_01879 0.46 -0.0
2,019,214 + CCNA_01879 0.56 +0.2
2,019,214 + CCNA_01879 0.56 -2.0
2,019,214 + CCNA_01879 0.56 -0.4
2,019,215 + CCNA_01879 0.56 -0.7
2,019,222 - CCNA_01879 0.56 -1.4
2,019,274 + CCNA_01879 0.61 +0.1
2,019,314 + CCNA_01879 0.65 -0.1
2,019,365 + CCNA_01879 0.69 -0.5
2,019,373 - CCNA_01879 0.70 -1.0
2,019,451 - CCNA_01879 0.77 +0.0
2,019,460 + CCNA_01879 0.78 +0.8
2,019,563 + CCNA_01879 0.87 +0.5
2,019,563 + CCNA_01879 0.87 +0.0
2,019,611 - -2.0
2,019,622 + +0.7
2,019,627 + -0.6
2,019,635 - -0.3
2,019,685 + +0.4
2,019,713 + -0.3
2,019,773 - -0.3
2,019,818 - -0.6
2,019,836 - -0.3
2,019,874 + CCNA_01880 0.13 -1.5
2,019,882 - CCNA_01880 0.14 +0.1
2,019,925 + CCNA_01880 0.19 -0.6
2,019,995 + CCNA_01880 0.29 -1.4
2,020,002 + CCNA_01880 0.30 -0.3
2,020,003 - CCNA_01880 0.30 +0.1
2,020,010 - CCNA_01880 0.31 -1.6
2,020,021 - CCNA_01880 0.32 -0.3
2,020,049 + CCNA_01880 0.36 +0.4
2,020,059 + CCNA_01880 0.38 -0.0
2,020,067 - CCNA_01880 0.39 -1.9
2,020,087 - CCNA_01880 0.41 -0.3
2,020,092 + CCNA_01880 0.42 +0.8
2,020,100 - CCNA_01880 0.43 -0.2
2,020,100 - CCNA_01880 0.43 -0.8
2,020,100 - CCNA_01880 0.43 -1.3
2,020,111 - CCNA_01880 0.44 -1.2
2,020,238 + CCNA_01880 0.62 -0.1
2,020,238 + CCNA_01880 0.62 -0.3
2,020,238 + CCNA_01880 0.62 +0.2
2,020,246 - CCNA_01880 0.63 +0.9
2,020,246 - CCNA_01880 0.63 -0.5
2,020,294 - CCNA_01880 0.69 -0.7
2,020,389 - CCNA_01880 0.82 +0.3
2,020,394 - CCNA_01880 0.83 -1.3
2,020,403 + CCNA_01880 0.84 -0.7
2,020,457 - +0.3
2,020,525 - -0.7
2,020,535 - -0.1
2,020,577 + -2.2
2,020,616 + CCNA_01881 0.15 +0.6
2,020,621 + CCNA_01881 0.16 -0.5
2,020,775 + CCNA_01881 0.40 -1.1
2,020,775 + CCNA_01881 0.40 +0.4
2,020,795 - CCNA_01881 0.43 -0.8
2,020,795 - CCNA_01881 0.43 +0.1
2,020,795 - CCNA_01881 0.43 +0.0
2,020,908 + CCNA_01881 0.61 -0.7
2,020,914 + CCNA_01881 0.62 -1.3
2,020,931 - CCNA_01881 0.64 -2.1
2,020,955 + CCNA_01881 0.68 -0.3
2,020,955 + CCNA_01881 0.68 -0.2
2,020,955 + CCNA_01881 0.68 -0.0
2,020,955 + CCNA_01881 0.68 +1.2
2,020,963 - CCNA_01881 0.69 -1.2
2,020,963 - CCNA_01881 0.69 -2.1
2,020,964 - CCNA_01881 0.69 -0.4
2,020,964 - CCNA_01881 0.69 +0.1
2,020,964 - CCNA_01881 0.69 -1.5
2,020,968 - CCNA_01881 0.70 -1.0
2,021,076 + CCNA_01881 0.87 -1.1
2,021,082 + CCNA_01881 0.88 +0.5
2,021,099 + +0.6
2,021,152 + -0.7
2,021,160 - -0.7
2,021,225 + -1.6
2,021,233 - -0.1
2,021,233 - -0.4
2,021,252 + CCNA_01882 0.11 +0.0
2,021,260 - CCNA_01882 0.12 -1.4
2,021,313 + CCNA_01882 0.18 -0.7
2,021,335 + CCNA_01882 0.20 -1.2
2,021,343 - CCNA_01882 0.21 -0.5
2,021,343 - CCNA_01882 0.21 -0.5
2,021,343 - CCNA_01882 0.21 -0.9
2,021,392 + CCNA_01882 0.27 -1.5
2,021,435 + CCNA_01882 0.32 -0.6
2,021,446 + CCNA_01882 0.33 +0.2
2,021,463 + CCNA_01882 0.35 -0.3
2,021,463 + CCNA_01882 0.35 -1.5
2,021,463 + CCNA_01882 0.35 +0.5

Or see this region's nucleotide sequence