Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01816 and CCNA_01817 overlap by 4 nucleotides CCNA_01817 and CCNA_01818 are separated by 0 nucleotides
CCNA_01816: CCNA_01816 - nitrogen regulation protein ntrY, at 1,941,312 to 1,943,555
_01816
CCNA_01817: CCNA_01817 - nitrogen assimilation regulatory protein ntrX, at 1,943,552 to 1,944,940
_01817
CCNA_01818: CCNA_01818 - D-alanine aminotransferase, at 1,944,941 to 1,945,804
_01818
Position (kb)
1943
1944
1945 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1942.593 kb on + strand, within CCNA_01816 at 1942.601 kb on - strand, within CCNA_01816 at 1942.703 kb on + strand, within CCNA_01816 at 1942.731 kb on + strand, within CCNA_01816 at 1942.776 kb on + strand, within CCNA_01816 at 1942.844 kb on - strand, within CCNA_01816 at 1942.947 kb on - strand, within CCNA_01816 at 1943.012 kb on + strand, within CCNA_01816 at 1943.054 kb on + strand, within CCNA_01816 at 1943.085 kb on + strand, within CCNA_01816 at 1943.182 kb on + strand, within CCNA_01816 at 1943.182 kb on + strand, within CCNA_01816 at 1943.200 kb on - strand, within CCNA_01816 at 1943.207 kb on - strand, within CCNA_01816 at 1943.269 kb on - strand, within CCNA_01816 at 1943.274 kb on + strand, within CCNA_01816 at 1943.274 kb on + strand, within CCNA_01816 at 1943.308 kb on - strand, within CCNA_01816 at 1943.323 kb on - strand, within CCNA_01816 at 1943.394 kb on + strand at 1943.395 kb on + strand at 1943.395 kb on + strand at 1943.395 kb on - strand at 1943.408 kb on - strand at 1943.408 kb on - strand at 1943.408 kb on - strand at 1943.451 kb on - strand at 1943.455 kb on - strand at 1943.487 kb on + strand at 1943.511 kb on + strand at 1943.526 kb on + strand at 1943.526 kb on + strand at 1943.534 kb on - strand at 1943.660 kb on - strand at 1943.738 kb on - strand, within CCNA_01817 at 1943.739 kb on + strand, within CCNA_01817 at 1943.739 kb on + strand, within CCNA_01817 at 1943.739 kb on + strand, within CCNA_01817 at 1943.758 kb on + strand, within CCNA_01817 at 1943.759 kb on + strand, within CCNA_01817 at 1943.766 kb on - strand, within CCNA_01817 at 1943.814 kb on - strand, within CCNA_01817 at 1943.966 kb on - strand, within CCNA_01817 at 1944.003 kb on - strand, within CCNA_01817 at 1944.100 kb on - strand, within CCNA_01817 at 1944.130 kb on - strand, within CCNA_01817 at 1944.290 kb on + strand, within CCNA_01817 at 1944.298 kb on - strand, within CCNA_01817 at 1944.327 kb on - strand, within CCNA_01817 at 1944.455 kb on - strand, within CCNA_01817 at 1944.548 kb on + strand, within CCNA_01817 at 1944.569 kb on + strand, within CCNA_01817 at 1944.588 kb on + strand, within CCNA_01817 at 1944.590 kb on + strand, within CCNA_01817 at 1944.590 kb on + strand, within CCNA_01817 at 1944.878 kb on + strand at 1944.878 kb on + strand at 1944.886 kb on - strand at 1945.107 kb on + strand, within CCNA_01818 at 1945.107 kb on + strand, within CCNA_01818 at 1945.107 kb on + strand, within CCNA_01818 at 1945.115 kb on - strand, within CCNA_01818 at 1945.128 kb on - strand, within CCNA_01818 at 1945.160 kb on + strand, within CCNA_01818 at 1945.194 kb on + strand, within CCNA_01818 at 1945.199 kb on + strand, within CCNA_01818 at 1945.241 kb on + strand, within CCNA_01818 at 1945.248 kb on - strand, within CCNA_01818 at 1945.272 kb on + strand, within CCNA_01818 at 1945.312 kb on + strand, within CCNA_01818 at 1945.318 kb on + strand, within CCNA_01818 at 1945.326 kb on - strand, within CCNA_01818 at 1945.326 kb on - strand, within CCNA_01818 at 1945.402 kb on + strand, within CCNA_01818 at 1945.416 kb on - strand, within CCNA_01818 at 1945.467 kb on + strand, within CCNA_01818 at 1945.509 kb on - strand, within CCNA_01818 at 1945.526 kb on + strand, within CCNA_01818 at 1945.526 kb on + strand, within CCNA_01818 at 1945.536 kb on + strand, within CCNA_01818 at 1945.537 kb on - strand, within CCNA_01818 at 1945.583 kb on - strand, within CCNA_01818 at 1945.585 kb on + strand, within CCNA_01818 at 1945.591 kb on - strand, within CCNA_01818 at 1945.593 kb on - strand, within CCNA_01818 at 1945.608 kb on + strand, within CCNA_01818 at 1945.628 kb on + strand, within CCNA_01818 at 1945.716 kb on + strand, within CCNA_01818 at 1945.724 kb on - strand at 1945.898 kb on + strand at 1945.915 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 1,942,593 + CCNA_01816 0.57 +0.8 1,942,601 - CCNA_01816 0.57 -0.4 1,942,703 + CCNA_01816 0.62 +0.5 1,942,731 + CCNA_01816 0.63 +0.7 1,942,776 + CCNA_01816 0.65 +0.3 1,942,844 - CCNA_01816 0.68 +1.6 1,942,947 - CCNA_01816 0.73 +0.0 1,943,012 + CCNA_01816 0.76 +0.9 1,943,054 + CCNA_01816 0.78 +0.7 1,943,085 + CCNA_01816 0.79 +0.7 1,943,182 + CCNA_01816 0.83 +0.9 1,943,182 + CCNA_01816 0.83 +1.3 1,943,200 - CCNA_01816 0.84 -0.1 1,943,207 - CCNA_01816 0.84 +0.4 1,943,269 - CCNA_01816 0.87 +0.6 1,943,274 + CCNA_01816 0.87 +1.1 1,943,274 + CCNA_01816 0.87 +0.5 1,943,308 - CCNA_01816 0.89 +0.3 1,943,323 - CCNA_01816 0.90 +0.1 1,943,394 + +0.7 1,943,395 + +0.6 1,943,395 + +1.0 1,943,395 - +0.5 1,943,408 - +0.8 1,943,408 - +1.2 1,943,408 - +1.1 1,943,451 - +0.9 1,943,455 - -1.1 1,943,487 + +1.3 1,943,511 + +0.6 1,943,526 + +1.6 1,943,526 + +1.9 1,943,534 - +0.9 1,943,660 - -0.3 1,943,738 - CCNA_01817 0.13 -2.4 1,943,739 + CCNA_01817 0.13 -0.9 1,943,739 + CCNA_01817 0.13 +0.5 1,943,739 + CCNA_01817 0.13 -0.1 1,943,758 + CCNA_01817 0.15 -0.2 1,943,759 + CCNA_01817 0.15 +1.2 1,943,766 - CCNA_01817 0.15 +0.9 1,943,814 - CCNA_01817 0.19 +0.9 1,943,966 - CCNA_01817 0.30 -0.8 1,944,003 - CCNA_01817 0.32 -1.4 1,944,100 - CCNA_01817 0.39 +0.1 1,944,130 - CCNA_01817 0.42 -0.1 1,944,290 + CCNA_01817 0.53 +0.1 1,944,298 - CCNA_01817 0.54 +0.3 1,944,327 - CCNA_01817 0.56 -0.1 1,944,455 - CCNA_01817 0.65 -1.1 1,944,548 + CCNA_01817 0.72 -2.5 1,944,569 + CCNA_01817 0.73 +0.1 1,944,588 + CCNA_01817 0.75 -1.1 1,944,590 + CCNA_01817 0.75 -1.1 1,944,590 + CCNA_01817 0.75 +0.2 1,944,878 + -0.8 1,944,878 + +0.9 1,944,886 - -0.5 1,945,107 + CCNA_01818 0.19 +0.8 1,945,107 + CCNA_01818 0.19 +0.3 1,945,107 + CCNA_01818 0.19 +0.1 1,945,115 - CCNA_01818 0.20 +0.0 1,945,128 - CCNA_01818 0.22 +0.1 1,945,160 + CCNA_01818 0.25 -0.2 1,945,194 + CCNA_01818 0.29 +0.0 1,945,199 + CCNA_01818 0.30 -0.0 1,945,241 + CCNA_01818 0.35 +0.3 1,945,248 - CCNA_01818 0.36 -0.1 1,945,272 + CCNA_01818 0.38 +0.7 1,945,312 + CCNA_01818 0.43 +0.7 1,945,318 + CCNA_01818 0.44 +0.7 1,945,326 - CCNA_01818 0.45 +1.1 1,945,326 - CCNA_01818 0.45 +0.2 1,945,402 + CCNA_01818 0.53 +0.2 1,945,416 - CCNA_01818 0.55 +1.5 1,945,467 + CCNA_01818 0.61 +0.1 1,945,509 - CCNA_01818 0.66 -1.4 1,945,526 + CCNA_01818 0.68 -0.2 1,945,526 + CCNA_01818 0.68 -0.2 1,945,536 + CCNA_01818 0.69 +0.0 1,945,537 - CCNA_01818 0.69 +0.3 1,945,583 - CCNA_01818 0.74 +0.2 1,945,585 + CCNA_01818 0.75 +0.2 1,945,591 - CCNA_01818 0.75 +0.4 1,945,593 - CCNA_01818 0.75 +0.0 1,945,608 + CCNA_01818 0.77 -0.5 1,945,628 + CCNA_01818 0.80 +1.5 1,945,716 + CCNA_01818 0.90 +0.1 1,945,724 - +0.9 1,945,898 + +0.5 1,945,915 - -0.8
Or see this region's nucleotide sequence