Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01783 and CCNA_01784 are separated by 176 nucleotides CCNA_01784 and CCNA_01785 overlap by 134 nucleotides
CCNA_01783: CCNA_01783 - chromosome replication regulator protein HdaA, at 1,911,358 to 1,912,050
_01783
CCNA_01784: CCNA_01784 - hypothetical protein, at 1,912,227 to 1,912,619
_01784
CCNA_01785: CCNA_01785 - hypothetical protein, at 1,912,486 to 1,913,097
_01785
Position (kb)
1912
1913 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1911.227 kb on + strand at 1911.246 kb on - strand at 1911.250 kb on - strand at 1911.273 kb on - strand at 1911.293 kb on + strand at 1911.298 kb on - strand at 1911.305 kb on + strand at 1911.313 kb on - strand at 1911.313 kb on - strand at 1911.315 kb on - strand at 1911.337 kb on + strand at 1911.338 kb on + strand at 1911.349 kb on + strand at 1911.356 kb on + strand at 1911.364 kb on - strand at 1911.369 kb on - strand at 1912.084 kb on + strand at 1912.092 kb on - strand at 1912.092 kb on - strand at 1912.117 kb on + strand at 1912.165 kb on + strand at 1912.182 kb on + strand at 1912.252 kb on + strand at 1912.260 kb on - strand at 1912.299 kb on + strand, within CCNA_01784 at 1912.307 kb on - strand, within CCNA_01784 at 1912.372 kb on + strand, within CCNA_01784 at 1912.372 kb on + strand, within CCNA_01784 at 1912.380 kb on - strand, within CCNA_01784 at 1912.380 kb on - strand, within CCNA_01784 at 1912.399 kb on - strand, within CCNA_01784 at 1912.638 kb on - strand, within CCNA_01785 at 1912.725 kb on + strand, within CCNA_01785 at 1912.733 kb on - strand, within CCNA_01785 at 1912.733 kb on - strand, within CCNA_01785 at 1912.735 kb on - strand, within CCNA_01785 at 1912.738 kb on + strand, within CCNA_01785 at 1912.738 kb on + strand, within CCNA_01785 at 1912.743 kb on + strand, within CCNA_01785 at 1912.801 kb on - strand, within CCNA_01785 at 1912.846 kb on - strand, within CCNA_01785 at 1912.859 kb on - strand, within CCNA_01785 at 1912.864 kb on - strand, within CCNA_01785 at 1912.894 kb on + strand, within CCNA_01785 at 1912.984 kb on + strand, within CCNA_01785 at 1912.985 kb on + strand, within CCNA_01785 at 1913.006 kb on - strand, within CCNA_01785 at 1913.079 kb on + strand at 1913.079 kb on + strand at 1913.087 kb on - strand at 1913.087 kb on - strand at 1913.181 kb on - strand at 1913.205 kb on + strand at 1913.215 kb on + strand at 1913.230 kb on + strand at 1913.230 kb on + strand at 1913.230 kb on + strand at 1913.238 kb on - strand at 1913.238 kb on - strand at 1913.243 kb on - strand at 1913.248 kb on - strand at 1913.306 kb on - strand at 1913.306 kb on - strand at 1913.316 kb on - strand at 1913.318 kb on + strand at 1913.326 kb on - strand at 1913.357 kb on + strand at 1913.364 kb on - strand at 1913.374 kb on + strand at 1913.374 kb on + strand at 1913.382 kb on - strand at 1913.382 kb on - strand at 1913.382 kb on - strand at 1913.383 kb on - strand at 1913.389 kb on + strand at 1913.401 kb on + strand at 1913.401 kb on + strand at 1913.424 kb on + strand at 1913.442 kb on - strand at 1913.453 kb on + strand at 1913.461 kb on - strand at 1913.463 kb on - strand at 1913.518 kb on + strand at 1913.524 kb on + strand at 1913.525 kb on - strand at 1913.530 kb on + strand at 1913.532 kb on - strand at 1913.549 kb on + strand at 1913.549 kb on + strand at 1913.549 kb on + strand at 1913.550 kb on - strand at 1913.554 kb on + strand at 1913.597 kb on + strand at 1913.597 kb on + strand at 1913.606 kb on + strand at 1913.615 kb on - strand at 1913.617 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 1,911,227 + +0.7 1,911,246 - +1.1 1,911,250 - -0.7 1,911,273 - +0.2 1,911,293 + +0.6 1,911,298 - -0.4 1,911,305 + -2.4 1,911,313 - +0.2 1,911,313 - +0.1 1,911,315 - +0.6 1,911,337 + -0.6 1,911,338 + -0.8 1,911,349 + -1.3 1,911,356 + -0.1 1,911,364 - +0.4 1,911,369 - +0.3 1,912,084 + -3.2 1,912,092 - +0.4 1,912,092 - +0.6 1,912,117 + +0.7 1,912,165 + +1.7 1,912,182 + +0.9 1,912,252 + -1.9 1,912,260 - -1.1 1,912,299 + CCNA_01784 0.18 -1.1 1,912,307 - CCNA_01784 0.20 +0.6 1,912,372 + CCNA_01784 0.37 +0.5 1,912,372 + CCNA_01784 0.37 +1.6 1,912,380 - CCNA_01784 0.39 -0.1 1,912,380 - CCNA_01784 0.39 +0.1 1,912,399 - CCNA_01784 0.44 -1.5 1,912,638 - CCNA_01785 0.25 -0.8 1,912,725 + CCNA_01785 0.39 +0.1 1,912,733 - CCNA_01785 0.40 -1.1 1,912,733 - CCNA_01785 0.40 -0.7 1,912,735 - CCNA_01785 0.41 -0.0 1,912,738 + CCNA_01785 0.41 -2.7 1,912,738 + CCNA_01785 0.41 +0.7 1,912,743 + CCNA_01785 0.42 +0.0 1,912,801 - CCNA_01785 0.51 -0.5 1,912,846 - CCNA_01785 0.59 -0.1 1,912,859 - CCNA_01785 0.61 -1.3 1,912,864 - CCNA_01785 0.62 +1.3 1,912,894 + CCNA_01785 0.67 +0.4 1,912,984 + CCNA_01785 0.81 +0.0 1,912,985 + CCNA_01785 0.82 -0.8 1,913,006 - CCNA_01785 0.85 -0.7 1,913,079 + -0.5 1,913,079 + +1.6 1,913,087 - +0.6 1,913,087 - +0.5 1,913,181 - -1.6 1,913,205 + -0.1 1,913,215 + +0.3 1,913,230 + -0.2 1,913,230 + -1.0 1,913,230 + +0.0 1,913,238 - -0.9 1,913,238 - +0.3 1,913,243 - -0.2 1,913,248 - +1.3 1,913,306 - -0.2 1,913,306 - -1.9 1,913,316 - +0.9 1,913,318 + +1.1 1,913,326 - -0.6 1,913,357 + +0.8 1,913,364 - -0.2 1,913,374 + +0.1 1,913,374 + +0.2 1,913,382 - -0.2 1,913,382 - -0.5 1,913,382 - -0.3 1,913,383 - -0.1 1,913,389 + +0.1 1,913,401 + +1.0 1,913,401 + -0.3 1,913,424 + +1.7 1,913,442 - -0.8 1,913,453 + +0.3 1,913,461 - -0.9 1,913,463 - -0.5 1,913,518 + +0.2 1,913,524 + -0.9 1,913,525 - -0.1 1,913,530 + -0.8 1,913,532 - +1.2 1,913,549 + -0.2 1,913,549 + +0.2 1,913,549 + -0.7 1,913,550 - +2.6 1,913,554 + +1.9 1,913,597 + +0.1 1,913,597 + -0.1 1,913,606 + +0.2 1,913,615 - +0.1 1,913,617 + +0.1
Or see this region's nucleotide sequence