Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01784

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01783 and CCNA_01784 are separated by 176 nucleotidesCCNA_01784 and CCNA_01785 overlap by 134 nucleotides CCNA_01783: CCNA_01783 - chromosome replication regulator protein HdaA, at 1,911,358 to 1,912,050 _01783 CCNA_01784: CCNA_01784 - hypothetical protein, at 1,912,227 to 1,912,619 _01784 CCNA_01785: CCNA_01785 - hypothetical protein, at 1,912,486 to 1,913,097 _01785 Position (kb) 1912 1913Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1911.227 kb on + strandat 1911.246 kb on - strandat 1911.250 kb on - strandat 1911.273 kb on - strandat 1911.293 kb on + strandat 1911.298 kb on - strandat 1911.305 kb on + strandat 1911.313 kb on - strandat 1911.313 kb on - strandat 1911.315 kb on - strandat 1911.337 kb on + strandat 1911.338 kb on + strandat 1911.349 kb on + strandat 1911.356 kb on + strandat 1911.364 kb on - strandat 1911.369 kb on - strandat 1912.084 kb on + strandat 1912.092 kb on - strandat 1912.092 kb on - strandat 1912.117 kb on + strandat 1912.165 kb on + strandat 1912.182 kb on + strandat 1912.252 kb on + strandat 1912.260 kb on - strandat 1912.299 kb on + strand, within CCNA_01784at 1912.307 kb on - strand, within CCNA_01784at 1912.372 kb on + strand, within CCNA_01784at 1912.372 kb on + strand, within CCNA_01784at 1912.380 kb on - strand, within CCNA_01784at 1912.380 kb on - strand, within CCNA_01784at 1912.399 kb on - strand, within CCNA_01784at 1912.638 kb on - strand, within CCNA_01785at 1912.725 kb on + strand, within CCNA_01785at 1912.733 kb on - strand, within CCNA_01785at 1912.733 kb on - strand, within CCNA_01785at 1912.735 kb on - strand, within CCNA_01785at 1912.738 kb on + strand, within CCNA_01785at 1912.738 kb on + strand, within CCNA_01785at 1912.743 kb on + strand, within CCNA_01785at 1912.801 kb on - strand, within CCNA_01785at 1912.846 kb on - strand, within CCNA_01785at 1912.859 kb on - strand, within CCNA_01785at 1912.864 kb on - strand, within CCNA_01785at 1912.894 kb on + strand, within CCNA_01785at 1912.984 kb on + strand, within CCNA_01785at 1912.985 kb on + strand, within CCNA_01785at 1913.006 kb on - strand, within CCNA_01785at 1913.079 kb on + strandat 1913.079 kb on + strandat 1913.087 kb on - strandat 1913.087 kb on - strandat 1913.181 kb on - strandat 1913.205 kb on + strandat 1913.215 kb on + strandat 1913.230 kb on + strandat 1913.230 kb on + strandat 1913.230 kb on + strandat 1913.238 kb on - strandat 1913.238 kb on - strandat 1913.243 kb on - strandat 1913.248 kb on - strandat 1913.306 kb on - strandat 1913.306 kb on - strandat 1913.316 kb on - strandat 1913.318 kb on + strandat 1913.326 kb on - strandat 1913.357 kb on + strandat 1913.364 kb on - strandat 1913.374 kb on + strandat 1913.374 kb on + strandat 1913.382 kb on - strandat 1913.382 kb on - strandat 1913.382 kb on - strandat 1913.383 kb on - strandat 1913.389 kb on + strandat 1913.401 kb on + strandat 1913.401 kb on + strandat 1913.424 kb on + strandat 1913.442 kb on - strandat 1913.453 kb on + strandat 1913.461 kb on - strandat 1913.463 kb on - strandat 1913.518 kb on + strandat 1913.524 kb on + strandat 1913.525 kb on - strandat 1913.530 kb on + strandat 1913.532 kb on - strandat 1913.549 kb on + strandat 1913.549 kb on + strandat 1913.549 kb on + strandat 1913.550 kb on - strandat 1913.554 kb on + strandat 1913.597 kb on + strandat 1913.597 kb on + strandat 1913.606 kb on + strandat 1913.615 kb on - strandat 1913.617 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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1,911,227 + +0.7
1,911,246 - +1.1
1,911,250 - -0.7
1,911,273 - +0.2
1,911,293 + +0.6
1,911,298 - -0.4
1,911,305 + -2.4
1,911,313 - +0.2
1,911,313 - +0.1
1,911,315 - +0.6
1,911,337 + -0.6
1,911,338 + -0.8
1,911,349 + -1.3
1,911,356 + -0.1
1,911,364 - +0.4
1,911,369 - +0.3
1,912,084 + -3.2
1,912,092 - +0.4
1,912,092 - +0.6
1,912,117 + +0.7
1,912,165 + +1.7
1,912,182 + +0.9
1,912,252 + -1.9
1,912,260 - -1.1
1,912,299 + CCNA_01784 0.18 -1.1
1,912,307 - CCNA_01784 0.20 +0.6
1,912,372 + CCNA_01784 0.37 +0.5
1,912,372 + CCNA_01784 0.37 +1.6
1,912,380 - CCNA_01784 0.39 -0.1
1,912,380 - CCNA_01784 0.39 +0.1
1,912,399 - CCNA_01784 0.44 -1.5
1,912,638 - CCNA_01785 0.25 -0.8
1,912,725 + CCNA_01785 0.39 +0.1
1,912,733 - CCNA_01785 0.40 -1.1
1,912,733 - CCNA_01785 0.40 -0.7
1,912,735 - CCNA_01785 0.41 -0.0
1,912,738 + CCNA_01785 0.41 -2.7
1,912,738 + CCNA_01785 0.41 +0.7
1,912,743 + CCNA_01785 0.42 +0.0
1,912,801 - CCNA_01785 0.51 -0.5
1,912,846 - CCNA_01785 0.59 -0.1
1,912,859 - CCNA_01785 0.61 -1.3
1,912,864 - CCNA_01785 0.62 +1.3
1,912,894 + CCNA_01785 0.67 +0.4
1,912,984 + CCNA_01785 0.81 +0.0
1,912,985 + CCNA_01785 0.82 -0.8
1,913,006 - CCNA_01785 0.85 -0.7
1,913,079 + -0.5
1,913,079 + +1.6
1,913,087 - +0.6
1,913,087 - +0.5
1,913,181 - -1.6
1,913,205 + -0.1
1,913,215 + +0.3
1,913,230 + -0.2
1,913,230 + -1.0
1,913,230 + +0.0
1,913,238 - -0.9
1,913,238 - +0.3
1,913,243 - -0.2
1,913,248 - +1.3
1,913,306 - -0.2
1,913,306 - -1.9
1,913,316 - +0.9
1,913,318 + +1.1
1,913,326 - -0.6
1,913,357 + +0.8
1,913,364 - -0.2
1,913,374 + +0.1
1,913,374 + +0.2
1,913,382 - -0.2
1,913,382 - -0.5
1,913,382 - -0.3
1,913,383 - -0.1
1,913,389 + +0.1
1,913,401 + +1.0
1,913,401 + -0.3
1,913,424 + +1.7
1,913,442 - -0.8
1,913,453 + +0.3
1,913,461 - -0.9
1,913,463 - -0.5
1,913,518 + +0.2
1,913,524 + -0.9
1,913,525 - -0.1
1,913,530 + -0.8
1,913,532 - +1.2
1,913,549 + -0.2
1,913,549 + +0.2
1,913,549 + -0.7
1,913,550 - +2.6
1,913,554 + +1.9
1,913,597 + +0.1
1,913,597 + -0.1
1,913,606 + +0.2
1,913,615 - +0.1
1,913,617 + +0.1

Or see this region's nucleotide sequence