Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01730 and CCNA_01731 overlap by 4 nucleotides CCNA_01731 and CCNA_01732 overlap by 4 nucleotides CCNA_01732 and CCNA_01733 are separated by 73 nucleotides
CCNA_01730: CCNA_01730 - amidophosphoribosyltransferase, at 1,858,257 to 1,859,759
_01730
CCNA_01731: CCNA_01731 - colicin V production protein CvpA, at 1,859,756 to 1,860,373
_01731
CCNA_01732: CCNA_01732 - DNA repair protein RadA, at 1,860,370 to 1,861,752
_01732
CCNA_01733: CCNA_01733 - alanine racemase, at 1,861,826 to 1,862,920
_01733
Position (kb)
1860
1861
1862 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1859.513 kb on + strand, within CCNA_01730 at 1859.549 kb on - strand, within CCNA_01730 at 1859.551 kb on + strand, within CCNA_01730 at 1859.559 kb on - strand, within CCNA_01730 at 1859.591 kb on + strand, within CCNA_01730 at 1859.604 kb on + strand, within CCNA_01730 at 1859.612 kb on - strand at 1859.644 kb on + strand at 1859.733 kb on - strand at 1859.852 kb on + strand, within CCNA_01731 at 1859.852 kb on + strand, within CCNA_01731 at 1859.860 kb on - strand, within CCNA_01731 at 1859.898 kb on + strand, within CCNA_01731 at 1859.900 kb on - strand, within CCNA_01731 at 1859.966 kb on + strand, within CCNA_01731 at 1859.968 kb on + strand, within CCNA_01731 at 1859.974 kb on - strand, within CCNA_01731 at 1860.050 kb on + strand, within CCNA_01731 at 1860.063 kb on - strand, within CCNA_01731 at 1860.196 kb on + strand, within CCNA_01731 at 1860.249 kb on - strand, within CCNA_01731 at 1860.256 kb on - strand, within CCNA_01731 at 1860.365 kb on - strand at 1860.373 kb on + strand at 1860.373 kb on + strand at 1860.373 kb on + strand at 1860.380 kb on - strand at 1860.493 kb on + strand at 1860.690 kb on + strand, within CCNA_01732 at 1860.939 kb on + strand, within CCNA_01732 at 1861.224 kb on - strand, within CCNA_01732 at 1861.322 kb on + strand, within CCNA_01732 at 1861.440 kb on + strand, within CCNA_01732 at 1861.448 kb on - strand, within CCNA_01732 at 1861.610 kb on + strand, within CCNA_01732 at 1861.681 kb on + strand at 1861.707 kb on - strand at 1861.726 kb on + strand at 1861.771 kb on + strand at 1861.796 kb on - strand at 1861.823 kb on + strand at 1861.823 kb on + strand at 1861.831 kb on - strand at 1861.831 kb on - strand at 1861.836 kb on - strand at 1861.857 kb on - strand at 1861.864 kb on + strand at 1861.882 kb on - strand at 1861.883 kb on + strand at 1861.935 kb on + strand at 1861.935 kb on + strand at 1861.938 kb on - strand, within CCNA_01733 at 1862.026 kb on - strand, within CCNA_01733 at 1862.173 kb on + strand, within CCNA_01733 at 1862.253 kb on + strand, within CCNA_01733 at 1862.255 kb on + strand, within CCNA_01733 at 1862.274 kb on + strand, within CCNA_01733 at 1862.287 kb on - strand, within CCNA_01733 at 1862.399 kb on - strand, within CCNA_01733 at 1862.418 kb on + strand, within CCNA_01733 at 1862.423 kb on + strand, within CCNA_01733 at 1862.423 kb on + strand, within CCNA_01733 at 1862.431 kb on - strand, within CCNA_01733 at 1862.431 kb on - strand, within CCNA_01733 at 1862.431 kb on - strand, within CCNA_01733 at 1862.475 kb on - strand, within CCNA_01733 at 1862.496 kb on - strand, within CCNA_01733 at 1862.509 kb on + strand, within CCNA_01733 at 1862.509 kb on + strand, within CCNA_01733 at 1862.537 kb on + strand, within CCNA_01733 at 1862.537 kb on + strand, within CCNA_01733 at 1862.537 kb on + strand, within CCNA_01733 at 1862.545 kb on - strand, within CCNA_01733 at 1862.562 kb on + strand, within CCNA_01733 at 1862.583 kb on + strand, within CCNA_01733 at 1862.585 kb on - strand, within CCNA_01733 at 1862.591 kb on - strand, within CCNA_01733 at 1862.597 kb on - strand, within CCNA_01733 at 1862.621 kb on - strand, within CCNA_01733 at 1862.628 kb on + strand, within CCNA_01733 at 1862.663 kb on + strand, within CCNA_01733 at 1862.705 kb on + strand, within CCNA_01733 at 1862.710 kb on + strand, within CCNA_01733 at 1862.710 kb on + strand, within CCNA_01733 at 1862.713 kb on - strand, within CCNA_01733 at 1862.713 kb on - strand, within CCNA_01733 at 1862.726 kb on - strand, within CCNA_01733
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 1,859,513 + CCNA_01730 0.84 -0.4 1,859,549 - CCNA_01730 0.86 +0.6 1,859,551 + CCNA_01730 0.86 +1.3 1,859,559 - CCNA_01730 0.87 -1.8 1,859,591 + CCNA_01730 0.89 -1.8 1,859,604 + CCNA_01730 0.90 +0.4 1,859,612 - -0.7 1,859,644 + -0.5 1,859,733 - +0.3 1,859,852 + CCNA_01731 0.16 +2.9 1,859,852 + CCNA_01731 0.16 -0.9 1,859,860 - CCNA_01731 0.17 +0.5 1,859,898 + CCNA_01731 0.23 -0.3 1,859,900 - CCNA_01731 0.23 +0.3 1,859,966 + CCNA_01731 0.34 +1.7 1,859,968 + CCNA_01731 0.34 +1.3 1,859,974 - CCNA_01731 0.35 +1.1 1,860,050 + CCNA_01731 0.48 -0.6 1,860,063 - CCNA_01731 0.50 +0.6 1,860,196 + CCNA_01731 0.71 -0.1 1,860,249 - CCNA_01731 0.80 +0.0 1,860,256 - CCNA_01731 0.81 +0.7 1,860,365 - -0.0 1,860,373 + -1.4 1,860,373 + -1.7 1,860,373 + -1.7 1,860,380 - -0.1 1,860,493 + +0.3 1,860,690 + CCNA_01732 0.23 -1.1 1,860,939 + CCNA_01732 0.41 +0.9 1,861,224 - CCNA_01732 0.62 -1.2 1,861,322 + CCNA_01732 0.69 +0.6 1,861,440 + CCNA_01732 0.77 -1.0 1,861,448 - CCNA_01732 0.78 -0.0 1,861,610 + CCNA_01732 0.90 +0.1 1,861,681 + +0.3 1,861,707 - -1.0 1,861,726 + -1.9 1,861,771 + +0.6 1,861,796 - -0.7 1,861,823 + -1.2 1,861,823 + -0.5 1,861,831 - +0.6 1,861,831 - +0.9 1,861,836 - +0.3 1,861,857 - +0.6 1,861,864 + +0.4 1,861,882 - +0.9 1,861,883 + +0.6 1,861,935 + +2.4 1,861,935 + -0.2 1,861,938 - CCNA_01733 0.10 -0.4 1,862,026 - CCNA_01733 0.18 +0.7 1,862,173 + CCNA_01733 0.32 -0.8 1,862,253 + CCNA_01733 0.39 -1.1 1,862,255 + CCNA_01733 0.39 -0.2 1,862,274 + CCNA_01733 0.41 +0.1 1,862,287 - CCNA_01733 0.42 +0.3 1,862,399 - CCNA_01733 0.52 -0.1 1,862,418 + CCNA_01733 0.54 -1.1 1,862,423 + CCNA_01733 0.55 -0.8 1,862,423 + CCNA_01733 0.55 -1.7 1,862,431 - CCNA_01733 0.55 +0.2 1,862,431 - CCNA_01733 0.55 -1.1 1,862,431 - CCNA_01733 0.55 +0.9 1,862,475 - CCNA_01733 0.59 +1.2 1,862,496 - CCNA_01733 0.61 +0.7 1,862,509 + CCNA_01733 0.62 +0.1 1,862,509 + CCNA_01733 0.62 -0.1 1,862,537 + CCNA_01733 0.65 -0.5 1,862,537 + CCNA_01733 0.65 +1.1 1,862,537 + CCNA_01733 0.65 -0.3 1,862,545 - CCNA_01733 0.66 +0.4 1,862,562 + CCNA_01733 0.67 -1.8 1,862,583 + CCNA_01733 0.69 +0.1 1,862,585 - CCNA_01733 0.69 +0.4 1,862,591 - CCNA_01733 0.70 +0.6 1,862,597 - CCNA_01733 0.70 +0.2 1,862,621 - CCNA_01733 0.73 +0.6 1,862,628 + CCNA_01733 0.73 +0.0 1,862,663 + CCNA_01733 0.76 +0.2 1,862,705 + CCNA_01733 0.80 +0.3 1,862,710 + CCNA_01733 0.81 +0.9 1,862,710 + CCNA_01733 0.81 +2.1 1,862,713 - CCNA_01733 0.81 +1.2 1,862,713 - CCNA_01733 0.81 +0.3 1,862,726 - CCNA_01733 0.82 +0.5
Or see this region's nucleotide sequence