Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01732

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01730 and CCNA_01731 overlap by 4 nucleotidesCCNA_01731 and CCNA_01732 overlap by 4 nucleotidesCCNA_01732 and CCNA_01733 are separated by 73 nucleotides CCNA_01730: CCNA_01730 - amidophosphoribosyltransferase, at 1,858,257 to 1,859,759 _01730 CCNA_01731: CCNA_01731 - colicin V production protein CvpA, at 1,859,756 to 1,860,373 _01731 CCNA_01732: CCNA_01732 - DNA repair protein RadA, at 1,860,370 to 1,861,752 _01732 CCNA_01733: CCNA_01733 - alanine racemase, at 1,861,826 to 1,862,920 _01733 Position (kb) 1860 1861 1862Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1859.513 kb on + strand, within CCNA_01730at 1859.549 kb on - strand, within CCNA_01730at 1859.551 kb on + strand, within CCNA_01730at 1859.559 kb on - strand, within CCNA_01730at 1859.591 kb on + strand, within CCNA_01730at 1859.604 kb on + strand, within CCNA_01730at 1859.612 kb on - strandat 1859.644 kb on + strandat 1859.733 kb on - strandat 1859.852 kb on + strand, within CCNA_01731at 1859.852 kb on + strand, within CCNA_01731at 1859.860 kb on - strand, within CCNA_01731at 1859.898 kb on + strand, within CCNA_01731at 1859.900 kb on - strand, within CCNA_01731at 1859.966 kb on + strand, within CCNA_01731at 1859.968 kb on + strand, within CCNA_01731at 1859.974 kb on - strand, within CCNA_01731at 1860.050 kb on + strand, within CCNA_01731at 1860.063 kb on - strand, within CCNA_01731at 1860.196 kb on + strand, within CCNA_01731at 1860.249 kb on - strand, within CCNA_01731at 1860.256 kb on - strand, within CCNA_01731at 1860.365 kb on - strandat 1860.373 kb on + strandat 1860.373 kb on + strandat 1860.373 kb on + strandat 1860.380 kb on - strandat 1860.493 kb on + strandat 1860.690 kb on + strand, within CCNA_01732at 1860.939 kb on + strand, within CCNA_01732at 1861.224 kb on - strand, within CCNA_01732at 1861.322 kb on + strand, within CCNA_01732at 1861.440 kb on + strand, within CCNA_01732at 1861.448 kb on - strand, within CCNA_01732at 1861.610 kb on + strand, within CCNA_01732at 1861.681 kb on + strandat 1861.707 kb on - strandat 1861.726 kb on + strandat 1861.771 kb on + strandat 1861.796 kb on - strandat 1861.823 kb on + strandat 1861.823 kb on + strandat 1861.831 kb on - strandat 1861.831 kb on - strandat 1861.836 kb on - strandat 1861.857 kb on - strandat 1861.864 kb on + strandat 1861.882 kb on - strandat 1861.883 kb on + strandat 1861.935 kb on + strandat 1861.935 kb on + strandat 1861.938 kb on - strand, within CCNA_01733at 1862.026 kb on - strand, within CCNA_01733at 1862.173 kb on + strand, within CCNA_01733at 1862.253 kb on + strand, within CCNA_01733at 1862.255 kb on + strand, within CCNA_01733at 1862.274 kb on + strand, within CCNA_01733at 1862.287 kb on - strand, within CCNA_01733at 1862.399 kb on - strand, within CCNA_01733at 1862.418 kb on + strand, within CCNA_01733at 1862.423 kb on + strand, within CCNA_01733at 1862.423 kb on + strand, within CCNA_01733at 1862.431 kb on - strand, within CCNA_01733at 1862.431 kb on - strand, within CCNA_01733at 1862.431 kb on - strand, within CCNA_01733at 1862.475 kb on - strand, within CCNA_01733at 1862.496 kb on - strand, within CCNA_01733at 1862.509 kb on + strand, within CCNA_01733at 1862.509 kb on + strand, within CCNA_01733at 1862.537 kb on + strand, within CCNA_01733at 1862.537 kb on + strand, within CCNA_01733at 1862.537 kb on + strand, within CCNA_01733at 1862.545 kb on - strand, within CCNA_01733at 1862.562 kb on + strand, within CCNA_01733at 1862.583 kb on + strand, within CCNA_01733at 1862.585 kb on - strand, within CCNA_01733at 1862.591 kb on - strand, within CCNA_01733at 1862.597 kb on - strand, within CCNA_01733at 1862.621 kb on - strand, within CCNA_01733at 1862.628 kb on + strand, within CCNA_01733at 1862.663 kb on + strand, within CCNA_01733at 1862.705 kb on + strand, within CCNA_01733at 1862.710 kb on + strand, within CCNA_01733at 1862.710 kb on + strand, within CCNA_01733at 1862.713 kb on - strand, within CCNA_01733at 1862.713 kb on - strand, within CCNA_01733at 1862.726 kb on - strand, within CCNA_01733

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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1,859,513 + CCNA_01730 0.84 -0.4
1,859,549 - CCNA_01730 0.86 +0.6
1,859,551 + CCNA_01730 0.86 +1.3
1,859,559 - CCNA_01730 0.87 -1.8
1,859,591 + CCNA_01730 0.89 -1.8
1,859,604 + CCNA_01730 0.90 +0.4
1,859,612 - -0.7
1,859,644 + -0.5
1,859,733 - +0.3
1,859,852 + CCNA_01731 0.16 +2.9
1,859,852 + CCNA_01731 0.16 -0.9
1,859,860 - CCNA_01731 0.17 +0.5
1,859,898 + CCNA_01731 0.23 -0.3
1,859,900 - CCNA_01731 0.23 +0.3
1,859,966 + CCNA_01731 0.34 +1.7
1,859,968 + CCNA_01731 0.34 +1.3
1,859,974 - CCNA_01731 0.35 +1.1
1,860,050 + CCNA_01731 0.48 -0.6
1,860,063 - CCNA_01731 0.50 +0.6
1,860,196 + CCNA_01731 0.71 -0.1
1,860,249 - CCNA_01731 0.80 +0.0
1,860,256 - CCNA_01731 0.81 +0.7
1,860,365 - -0.0
1,860,373 + -1.4
1,860,373 + -1.7
1,860,373 + -1.7
1,860,380 - -0.1
1,860,493 + +0.3
1,860,690 + CCNA_01732 0.23 -1.1
1,860,939 + CCNA_01732 0.41 +0.9
1,861,224 - CCNA_01732 0.62 -1.2
1,861,322 + CCNA_01732 0.69 +0.6
1,861,440 + CCNA_01732 0.77 -1.0
1,861,448 - CCNA_01732 0.78 -0.0
1,861,610 + CCNA_01732 0.90 +0.1
1,861,681 + +0.3
1,861,707 - -1.0
1,861,726 + -1.9
1,861,771 + +0.6
1,861,796 - -0.7
1,861,823 + -1.2
1,861,823 + -0.5
1,861,831 - +0.6
1,861,831 - +0.9
1,861,836 - +0.3
1,861,857 - +0.6
1,861,864 + +0.4
1,861,882 - +0.9
1,861,883 + +0.6
1,861,935 + +2.4
1,861,935 + -0.2
1,861,938 - CCNA_01733 0.10 -0.4
1,862,026 - CCNA_01733 0.18 +0.7
1,862,173 + CCNA_01733 0.32 -0.8
1,862,253 + CCNA_01733 0.39 -1.1
1,862,255 + CCNA_01733 0.39 -0.2
1,862,274 + CCNA_01733 0.41 +0.1
1,862,287 - CCNA_01733 0.42 +0.3
1,862,399 - CCNA_01733 0.52 -0.1
1,862,418 + CCNA_01733 0.54 -1.1
1,862,423 + CCNA_01733 0.55 -0.8
1,862,423 + CCNA_01733 0.55 -1.7
1,862,431 - CCNA_01733 0.55 +0.2
1,862,431 - CCNA_01733 0.55 -1.1
1,862,431 - CCNA_01733 0.55 +0.9
1,862,475 - CCNA_01733 0.59 +1.2
1,862,496 - CCNA_01733 0.61 +0.7
1,862,509 + CCNA_01733 0.62 +0.1
1,862,509 + CCNA_01733 0.62 -0.1
1,862,537 + CCNA_01733 0.65 -0.5
1,862,537 + CCNA_01733 0.65 +1.1
1,862,537 + CCNA_01733 0.65 -0.3
1,862,545 - CCNA_01733 0.66 +0.4
1,862,562 + CCNA_01733 0.67 -1.8
1,862,583 + CCNA_01733 0.69 +0.1
1,862,585 - CCNA_01733 0.69 +0.4
1,862,591 - CCNA_01733 0.70 +0.6
1,862,597 - CCNA_01733 0.70 +0.2
1,862,621 - CCNA_01733 0.73 +0.6
1,862,628 + CCNA_01733 0.73 +0.0
1,862,663 + CCNA_01733 0.76 +0.2
1,862,705 + CCNA_01733 0.80 +0.3
1,862,710 + CCNA_01733 0.81 +0.9
1,862,710 + CCNA_01733 0.81 +2.1
1,862,713 - CCNA_01733 0.81 +1.2
1,862,713 - CCNA_01733 0.81 +0.3
1,862,726 - CCNA_01733 0.82 +0.5

Or see this region's nucleotide sequence