Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01691 and CCNA_01692 are separated by 32 nucleotides CCNA_01692 and CCNA_01693 are separated by 127 nucleotides
CCNA_01691: CCNA_01691 - tRNA/rRNA methyltransferase, at 1,817,814 to 1,819,091
_01691
CCNA_01692: CCNA_01692 - GMP synthase GuaA, at 1,819,124 to 1,820,686
_01692
CCNA_01693: CCNA_01693 - LysR-family transcriptional regulator, at 1,820,814 to 1,821,710
_01693
Position (kb)
1819
1820
1821 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1818.163 kb on - strand, within CCNA_01691 at 1818.199 kb on + strand, within CCNA_01691 at 1818.260 kb on + strand, within CCNA_01691 at 1818.264 kb on - strand, within CCNA_01691 at 1818.287 kb on + strand, within CCNA_01691 at 1818.310 kb on - strand, within CCNA_01691 at 1818.327 kb on - strand, within CCNA_01691 at 1818.426 kb on + strand, within CCNA_01691 at 1818.437 kb on + strand, within CCNA_01691 at 1818.448 kb on + strand, within CCNA_01691 at 1818.514 kb on - strand, within CCNA_01691 at 1818.550 kb on + strand, within CCNA_01691 at 1818.620 kb on + strand, within CCNA_01691 at 1818.693 kb on + strand, within CCNA_01691 at 1818.693 kb on + strand, within CCNA_01691 at 1818.693 kb on + strand, within CCNA_01691 at 1818.701 kb on - strand, within CCNA_01691 at 1818.702 kb on + strand, within CCNA_01691 at 1818.740 kb on + strand, within CCNA_01691 at 1818.815 kb on + strand, within CCNA_01691 at 1818.885 kb on + strand, within CCNA_01691 at 1818.961 kb on + strand, within CCNA_01691 at 1818.983 kb on - strand at 1819.070 kb on - strand at 1819.107 kb on - strand at 1819.109 kb on + strand at 1819.120 kb on + strand at 1819.259 kb on + strand at 1819.267 kb on - strand at 1819.421 kb on + strand, within CCNA_01692 at 1819.566 kb on + strand, within CCNA_01692 at 1819.788 kb on - strand, within CCNA_01692 at 1819.868 kb on + strand, within CCNA_01692 at 1819.948 kb on + strand, within CCNA_01692 at 1819.948 kb on + strand, within CCNA_01692 at 1820.121 kb on + strand, within CCNA_01692 at 1820.245 kb on + strand, within CCNA_01692 at 1820.410 kb on + strand, within CCNA_01692 at 1820.736 kb on - strand at 1820.803 kb on + strand at 1820.903 kb on - strand at 1820.972 kb on - strand, within CCNA_01693 at 1821.159 kb on + strand, within CCNA_01693 at 1821.283 kb on + strand, within CCNA_01693 at 1821.283 kb on + strand, within CCNA_01693 at 1821.291 kb on - strand, within CCNA_01693 at 1821.304 kb on + strand, within CCNA_01693 at 1821.319 kb on + strand, within CCNA_01693 at 1821.322 kb on - strand, within CCNA_01693 at 1821.389 kb on - strand, within CCNA_01693 at 1821.398 kb on + strand, within CCNA_01693 at 1821.421 kb on + strand, within CCNA_01693 at 1821.429 kb on - strand, within CCNA_01693 at 1821.436 kb on + strand, within CCNA_01693 at 1821.436 kb on + strand, within CCNA_01693 at 1821.501 kb on + strand, within CCNA_01693 at 1821.514 kb on - strand, within CCNA_01693 at 1821.543 kb on - strand, within CCNA_01693 at 1821.543 kb on - strand, within CCNA_01693 at 1821.556 kb on + strand, within CCNA_01693 at 1821.556 kb on + strand, within CCNA_01693 at 1821.564 kb on - strand, within CCNA_01693 at 1821.564 kb on - strand, within CCNA_01693 at 1821.566 kb on + strand, within CCNA_01693 at 1821.574 kb on - strand, within CCNA_01693 at 1821.616 kb on + strand, within CCNA_01693 at 1821.621 kb on + strand at 1821.621 kb on + strand at 1821.629 kb on - strand at 1821.629 kb on - strand at 1821.629 kb on - strand at 1821.665 kb on + strand at 1821.666 kb on - strand at 1821.682 kb on + strand at 1821.682 kb on - strand at 1821.683 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 1,818,163 - CCNA_01691 0.27 -1.0 1,818,199 + CCNA_01691 0.30 +0.2 1,818,260 + CCNA_01691 0.35 +1.3 1,818,264 - CCNA_01691 0.35 -1.6 1,818,287 + CCNA_01691 0.37 +0.5 1,818,310 - CCNA_01691 0.39 -1.3 1,818,327 - CCNA_01691 0.40 -1.7 1,818,426 + CCNA_01691 0.48 -0.3 1,818,437 + CCNA_01691 0.49 -0.0 1,818,448 + CCNA_01691 0.50 +0.4 1,818,514 - CCNA_01691 0.55 -0.4 1,818,550 + CCNA_01691 0.58 -0.4 1,818,620 + CCNA_01691 0.63 -0.0 1,818,693 + CCNA_01691 0.69 -0.0 1,818,693 + CCNA_01691 0.69 +0.8 1,818,693 + CCNA_01691 0.69 +0.3 1,818,701 - CCNA_01691 0.69 -1.5 1,818,702 + CCNA_01691 0.69 +0.5 1,818,740 + CCNA_01691 0.72 -0.6 1,818,815 + CCNA_01691 0.78 +0.9 1,818,885 + CCNA_01691 0.84 +0.2 1,818,961 + CCNA_01691 0.90 -2.0 1,818,983 - -1.6 1,819,070 - -1.2 1,819,107 - -0.1 1,819,109 + +0.6 1,819,120 + -0.1 1,819,259 + -1.2 1,819,267 - +0.1 1,819,421 + CCNA_01692 0.19 -0.8 1,819,566 + CCNA_01692 0.28 -1.8 1,819,788 - CCNA_01692 0.42 -1.2 1,819,868 + CCNA_01692 0.48 -0.8 1,819,948 + CCNA_01692 0.53 +0.6 1,819,948 + CCNA_01692 0.53 -1.1 1,820,121 + CCNA_01692 0.64 +0.2 1,820,245 + CCNA_01692 0.72 -0.1 1,820,410 + CCNA_01692 0.82 -0.8 1,820,736 - -1.4 1,820,803 + +0.2 1,820,903 - +2.3 1,820,972 - CCNA_01693 0.18 -1.3 1,821,159 + CCNA_01693 0.38 -0.4 1,821,283 + CCNA_01693 0.52 -0.5 1,821,283 + CCNA_01693 0.52 +0.9 1,821,291 - CCNA_01693 0.53 -0.5 1,821,304 + CCNA_01693 0.55 -0.3 1,821,319 + CCNA_01693 0.56 -0.3 1,821,322 - CCNA_01693 0.57 +1.1 1,821,389 - CCNA_01693 0.64 -0.9 1,821,398 + CCNA_01693 0.65 -1.3 1,821,421 + CCNA_01693 0.68 -1.0 1,821,429 - CCNA_01693 0.69 -1.0 1,821,436 + CCNA_01693 0.69 -1.1 1,821,436 + CCNA_01693 0.69 -0.4 1,821,501 + CCNA_01693 0.77 -0.6 1,821,514 - CCNA_01693 0.78 -0.4 1,821,543 - CCNA_01693 0.81 -0.9 1,821,543 - CCNA_01693 0.81 -0.8 1,821,556 + CCNA_01693 0.83 -0.4 1,821,556 + CCNA_01693 0.83 -2.2 1,821,564 - CCNA_01693 0.84 -2.0 1,821,564 - CCNA_01693 0.84 +0.1 1,821,566 + CCNA_01693 0.84 +0.2 1,821,574 - CCNA_01693 0.85 +1.7 1,821,616 + CCNA_01693 0.89 +0.5 1,821,621 + -0.2 1,821,621 + -0.1 1,821,629 - -0.5 1,821,629 - +0.2 1,821,629 - -2.0 1,821,665 + -1.0 1,821,666 - -0.3 1,821,682 + +0.6 1,821,682 - +0.0 1,821,683 + +1.1
Or see this region's nucleotide sequence