Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01633 and CCNA_01634 overlap by 8 nucleotides CCNA_01634 and CCNA_01635 are separated by 2 nucleotides CCNA_01635 and CCNA_01636 are separated by 53 nucleotides
CCNA_01633: CCNA_01633 - GTP-binding protein era, at 1,751,636 to 1,752,586
_01633
CCNA_01634: CCNA_01634 - arylamine N-acetyltransferase, at 1,752,579 to 1,753,430
_01634
CCNA_01635: CCNA_01635 - DNA repair protein recO, at 1,753,433 to 1,754,164
_01635
CCNA_01636: CCNA_01636 - alkaline phosphatase, at 1,754,218 to 1,755,804
_01636
Position (kb)
1752
1753
1754 Strain fitness (log2 ratio)
-2
-1
0
1 at 1751.626 kb on - strand at 1751.626 kb on - strand at 1751.626 kb on - strand at 1752.514 kb on + strand at 1752.520 kb on + strand at 1752.520 kb on + strand at 1752.573 kb on + strand at 1752.581 kb on - strand at 1752.597 kb on - strand at 1752.637 kb on + strand at 1752.657 kb on + strand at 1752.660 kb on - strand at 1752.734 kb on - strand, within CCNA_01634 at 1752.750 kb on + strand, within CCNA_01634 at 1752.753 kb on - strand, within CCNA_01634 at 1752.758 kb on - strand, within CCNA_01634 at 1752.805 kb on - strand, within CCNA_01634 at 1752.888 kb on + strand, within CCNA_01634 at 1753.022 kb on + strand, within CCNA_01634 at 1753.022 kb on + strand, within CCNA_01634 at 1753.023 kb on + strand, within CCNA_01634 at 1753.023 kb on + strand, within CCNA_01634 at 1753.023 kb on + strand, within CCNA_01634 at 1753.023 kb on + strand, within CCNA_01634 at 1753.023 kb on + strand, within CCNA_01634 at 1753.023 kb on + strand, within CCNA_01634 at 1753.031 kb on - strand, within CCNA_01634 at 1753.031 kb on - strand, within CCNA_01634 at 1753.031 kb on - strand, within CCNA_01634 at 1753.031 kb on - strand, within CCNA_01634 at 1753.031 kb on - strand, within CCNA_01634 at 1753.031 kb on - strand, within CCNA_01634 at 1753.122 kb on - strand, within CCNA_01634 at 1753.151 kb on + strand, within CCNA_01634 at 1753.172 kb on + strand, within CCNA_01634 at 1753.186 kb on - strand, within CCNA_01634 at 1753.208 kb on - strand, within CCNA_01634 at 1753.217 kb on + strand, within CCNA_01634 at 1753.225 kb on - strand, within CCNA_01634 at 1753.225 kb on - strand, within CCNA_01634 at 1753.265 kb on - strand, within CCNA_01634 at 1753.403 kb on + strand at 1753.430 kb on + strand at 1753.502 kb on + strand at 1753.504 kb on + strand at 1753.545 kb on - strand, within CCNA_01635 at 1753.609 kb on + strand, within CCNA_01635 at 1753.663 kb on + strand, within CCNA_01635 at 1753.751 kb on + strand, within CCNA_01635 at 1753.773 kb on + strand, within CCNA_01635 at 1753.818 kb on - strand, within CCNA_01635 at 1753.823 kb on + strand, within CCNA_01635 at 1753.839 kb on + strand, within CCNA_01635 at 1753.863 kb on + strand, within CCNA_01635 at 1753.876 kb on - strand, within CCNA_01635 at 1753.950 kb on + strand, within CCNA_01635 at 1753.958 kb on - strand, within CCNA_01635 at 1753.969 kb on - strand, within CCNA_01635 at 1753.982 kb on + strand, within CCNA_01635 at 1754.026 kb on + strand, within CCNA_01635 at 1754.034 kb on - strand, within CCNA_01635 at 1754.078 kb on - strand, within CCNA_01635 at 1754.166 kb on - strand at 1754.166 kb on - strand at 1754.166 kb on - strand at 1754.166 kb on - strand at 1754.179 kb on - strand at 1754.214 kb on + strand at 1754.239 kb on + strand at 1754.247 kb on - strand at 1754.268 kb on + strand at 1754.325 kb on + strand at 1754.333 kb on - strand at 1754.337 kb on + strand at 1754.337 kb on + strand at 1754.337 kb on + strand at 1754.345 kb on - strand at 1754.410 kb on + strand, within CCNA_01636 at 1754.410 kb on + strand, within CCNA_01636 at 1754.417 kb on + strand, within CCNA_01636
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 1,751,626 - -0.4 1,751,626 - -0.3 1,751,626 - -1.8 1,752,514 + -0.4 1,752,520 + +0.9 1,752,520 + +1.5 1,752,573 + +0.3 1,752,581 - -1.9 1,752,597 - -0.8 1,752,637 + +0.3 1,752,657 + +0.2 1,752,660 - +0.7 1,752,734 - CCNA_01634 0.18 +0.9 1,752,750 + CCNA_01634 0.20 +0.6 1,752,753 - CCNA_01634 0.20 -0.7 1,752,758 - CCNA_01634 0.21 +0.1 1,752,805 - CCNA_01634 0.27 -0.5 1,752,888 + CCNA_01634 0.36 +0.9 1,753,022 + CCNA_01634 0.52 +0.1 1,753,022 + CCNA_01634 0.52 +0.2 1,753,023 + CCNA_01634 0.52 +0.4 1,753,023 + CCNA_01634 0.52 -0.3 1,753,023 + CCNA_01634 0.52 -0.3 1,753,023 + CCNA_01634 0.52 -0.6 1,753,023 + CCNA_01634 0.52 -0.2 1,753,023 + CCNA_01634 0.52 +0.5 1,753,031 - CCNA_01634 0.53 +1.2 1,753,031 - CCNA_01634 0.53 -1.4 1,753,031 - CCNA_01634 0.53 -0.3 1,753,031 - CCNA_01634 0.53 -0.1 1,753,031 - CCNA_01634 0.53 +0.3 1,753,031 - CCNA_01634 0.53 -1.9 1,753,122 - CCNA_01634 0.64 -0.8 1,753,151 + CCNA_01634 0.67 +0.2 1,753,172 + CCNA_01634 0.70 +0.6 1,753,186 - CCNA_01634 0.71 -0.3 1,753,208 - CCNA_01634 0.74 +1.4 1,753,217 + CCNA_01634 0.75 +0.9 1,753,225 - CCNA_01634 0.76 -1.6 1,753,225 - CCNA_01634 0.76 -0.5 1,753,265 - CCNA_01634 0.81 +0.5 1,753,403 + +0.6 1,753,430 + +0.4 1,753,502 + -0.0 1,753,504 + +1.0 1,753,545 - CCNA_01635 0.15 -0.1 1,753,609 + CCNA_01635 0.24 -0.3 1,753,663 + CCNA_01635 0.31 +0.2 1,753,751 + CCNA_01635 0.43 -0.3 1,753,773 + CCNA_01635 0.46 -1.7 1,753,818 - CCNA_01635 0.53 +0.1 1,753,823 + CCNA_01635 0.53 +0.1 1,753,839 + CCNA_01635 0.55 +0.1 1,753,863 + CCNA_01635 0.59 -0.7 1,753,876 - CCNA_01635 0.61 +0.7 1,753,950 + CCNA_01635 0.71 -0.0 1,753,958 - CCNA_01635 0.72 -0.4 1,753,969 - CCNA_01635 0.73 -0.7 1,753,982 + CCNA_01635 0.75 +0.0 1,754,026 + CCNA_01635 0.81 -0.0 1,754,034 - CCNA_01635 0.82 -0.4 1,754,078 - CCNA_01635 0.88 +0.3 1,754,166 - +1.0 1,754,166 - -0.5 1,754,166 - -0.3 1,754,166 - -0.7 1,754,179 - +0.2 1,754,214 + -0.1 1,754,239 + +0.2 1,754,247 - -0.1 1,754,268 + -0.2 1,754,325 + +1.2 1,754,333 - -0.1 1,754,337 + +0.7 1,754,337 + +1.2 1,754,337 + +1.0 1,754,345 - +0.4 1,754,410 + CCNA_01636 0.12 +0.7 1,754,410 + CCNA_01636 0.12 -1.0 1,754,417 + CCNA_01636 0.13 -0.4
Or see this region's nucleotide sequence