Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01622

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01620 and CCNA_01621 are separated by 128 nucleotidesCCNA_01621 and CCNA_01622 are separated by 101 nucleotidesCCNA_01622 and CCNA_01623 are separated by 137 nucleotidesCCNA_01623 and CCNA_01624 are separated by 80 nucleotides CCNA_01620: CCNA_01620 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 1,741,064 to 1,741,558 _01620 CCNA_01621: CCNA_01621 - DNA-directed RNA polymerase omega chain, at 1,741,687 to 1,742,046 _01621 CCNA_01622: CCNA_01622 - Rsh ppGpp hydrolase-synthetase, at 1,742,148 to 1,744,376 _01622 CCNA_01623: CCNA_01623 - phosphohydrolase, MutT/nudix family, at 1,744,514 to 1,744,933 _01623 CCNA_01624: CCNA_01624 - orotate phosphoribosyltransferase, at 1,745,014 to 1,745,598 _01624 Position (kb) 1742 1743 1744 1745Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1742.035 kb on - strandat 1742.037 kb on + strandat 1742.037 kb on + strandat 1742.040 kb on + strandat 1742.048 kb on - strandat 1742.064 kb on + strandat 1742.072 kb on - strandat 1742.079 kb on - strandat 1742.099 kb on + strandat 1742.107 kb on - strandat 1742.225 kb on + strandat 1742.234 kb on + strandat 1742.234 kb on + strandat 1742.242 kb on + strandat 1742.242 kb on - strandat 1742.242 kb on - strandat 1742.250 kb on - strandat 1742.268 kb on + strandat 1742.270 kb on + strandat 1742.276 kb on - strandat 1742.321 kb on + strandat 1742.329 kb on - strandat 1742.336 kb on + strandat 1742.336 kb on + strandat 1742.384 kb on + strand, within CCNA_01622at 1742.550 kb on + strand, within CCNA_01622at 1742.582 kb on + strand, within CCNA_01622at 1742.645 kb on + strand, within CCNA_01622at 1742.834 kb on + strand, within CCNA_01622at 1742.834 kb on + strand, within CCNA_01622at 1742.874 kb on + strand, within CCNA_01622at 1743.003 kb on + strand, within CCNA_01622at 1743.013 kb on + strand, within CCNA_01622at 1743.359 kb on + strand, within CCNA_01622at 1743.367 kb on - strand, within CCNA_01622at 1743.462 kb on + strand, within CCNA_01622at 1743.512 kb on + strand, within CCNA_01622at 1743.520 kb on - strand, within CCNA_01622at 1743.520 kb on - strand, within CCNA_01622at 1743.531 kb on + strand, within CCNA_01622at 1743.544 kb on - strand, within CCNA_01622at 1743.615 kb on + strand, within CCNA_01622at 1743.683 kb on - strand, within CCNA_01622at 1743.725 kb on + strand, within CCNA_01622at 1743.772 kb on + strand, within CCNA_01622at 1743.788 kb on + strand, within CCNA_01622at 1743.791 kb on - strand, within CCNA_01622at 1743.821 kb on + strand, within CCNA_01622at 1743.828 kb on + strand, within CCNA_01622at 1743.887 kb on + strand, within CCNA_01622at 1743.895 kb on - strand, within CCNA_01622at 1743.920 kb on + strand, within CCNA_01622at 1744.023 kb on + strand, within CCNA_01622at 1744.032 kb on + strand, within CCNA_01622at 1744.034 kb on - strand, within CCNA_01622at 1744.082 kb on + strand, within CCNA_01622at 1744.099 kb on - strand, within CCNA_01622at 1744.316 kb on + strandat 1744.370 kb on + strandat 1744.407 kb on - strandat 1744.407 kb on - strandat 1744.407 kb on - strandat 1744.433 kb on + strandat 1744.440 kb on + strandat 1744.446 kb on + strandat 1744.454 kb on - strandat 1744.454 kb on - strandat 1744.456 kb on + strandat 1744.464 kb on - strandat 1744.479 kb on + strandat 1744.479 kb on + strandat 1744.485 kb on - strandat 1744.485 kb on - strandat 1744.487 kb on + strandat 1744.487 kb on - strandat 1744.500 kb on + strandat 1744.500 kb on + strandat 1744.500 kb on + strandat 1744.500 kb on + strandat 1744.500 kb on + strandat 1744.506 kb on - strandat 1744.508 kb on - strandat 1744.508 kb on - strandat 1744.508 kb on - strandat 1744.508 kb on - strandat 1744.508 kb on - strandat 1744.512 kb on + strandat 1744.513 kb on - strandat 1744.514 kb on + strandat 1744.520 kb on - strandat 1744.520 kb on - strandat 1744.520 kb on - strandat 1744.528 kb on + strandat 1744.528 kb on + strandat 1744.533 kb on + strandat 1744.569 kb on - strand, within CCNA_01623at 1744.607 kb on - strand, within CCNA_01623at 1744.663 kb on - strand, within CCNA_01623at 1744.665 kb on + strand, within CCNA_01623at 1744.665 kb on + strand, within CCNA_01623at 1744.673 kb on - strand, within CCNA_01623at 1744.673 kb on - strand, within CCNA_01623at 1744.683 kb on + strand, within CCNA_01623at 1744.781 kb on - strand, within CCNA_01623at 1744.788 kb on + strand, within CCNA_01623at 1744.796 kb on - strand, within CCNA_01623at 1744.829 kb on - strand, within CCNA_01623at 1744.850 kb on - strand, within CCNA_01623at 1744.871 kb on + strand, within CCNA_01623at 1744.924 kb on + strandat 1744.960 kb on + strandat 1744.998 kb on + strandat 1745.019 kb on - strandat 1745.048 kb on + strandat 1745.068 kb on + strandat 1745.072 kb on + strandat 1745.090 kb on - strand, within CCNA_01624at 1745.100 kb on - strand, within CCNA_01624at 1745.162 kb on - strand, within CCNA_01624at 1745.164 kb on + strand, within CCNA_01624at 1745.201 kb on - strand, within CCNA_01624at 1745.244 kb on + strand, within CCNA_01624at 1745.244 kb on + strand, within CCNA_01624at 1745.262 kb on + strand, within CCNA_01624at 1745.303 kb on + strand, within CCNA_01624

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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1,742,035 - -1.1
1,742,037 + +0.7
1,742,037 + +0.7
1,742,040 + +0.3
1,742,048 - -0.1
1,742,064 + +0.3
1,742,072 - +0.9
1,742,079 - -1.5
1,742,099 + +0.5
1,742,107 - -0.5
1,742,225 + +1.1
1,742,234 + -0.3
1,742,234 + +0.6
1,742,242 + +0.3
1,742,242 - -1.5
1,742,242 - -1.5
1,742,250 - +0.6
1,742,268 + -0.6
1,742,270 + -0.2
1,742,276 - +0.9
1,742,321 + -0.3
1,742,329 - -0.1
1,742,336 + +0.3
1,742,336 + -0.6
1,742,384 + CCNA_01622 0.11 -0.9
1,742,550 + CCNA_01622 0.18 -0.1
1,742,582 + CCNA_01622 0.19 +1.0
1,742,645 + CCNA_01622 0.22 -1.9
1,742,834 + CCNA_01622 0.31 +2.5
1,742,834 + CCNA_01622 0.31 +0.2
1,742,874 + CCNA_01622 0.33 +0.9
1,743,003 + CCNA_01622 0.38 +1.3
1,743,013 + CCNA_01622 0.39 +0.9
1,743,359 + CCNA_01622 0.54 -0.5
1,743,367 - CCNA_01622 0.55 -0.7
1,743,462 + CCNA_01622 0.59 -0.3
1,743,512 + CCNA_01622 0.61 -0.8
1,743,520 - CCNA_01622 0.62 -3.5
1,743,520 - CCNA_01622 0.62 -2.6
1,743,531 + CCNA_01622 0.62 -0.5
1,743,544 - CCNA_01622 0.63 +0.9
1,743,615 + CCNA_01622 0.66 +0.3
1,743,683 - CCNA_01622 0.69 -1.1
1,743,725 + CCNA_01622 0.71 -0.9
1,743,772 + CCNA_01622 0.73 -0.5
1,743,788 + CCNA_01622 0.74 -0.5
1,743,791 - CCNA_01622 0.74 -0.7
1,743,821 + CCNA_01622 0.75 -0.3
1,743,828 + CCNA_01622 0.75 -1.4
1,743,887 + CCNA_01622 0.78 -0.5
1,743,895 - CCNA_01622 0.78 -1.3
1,743,920 + CCNA_01622 0.79 -0.3
1,744,023 + CCNA_01622 0.84 -0.6
1,744,032 + CCNA_01622 0.85 -0.2
1,744,034 - CCNA_01622 0.85 +0.3
1,744,082 + CCNA_01622 0.87 -0.8
1,744,099 - CCNA_01622 0.88 -1.0
1,744,316 + -0.4
1,744,370 + +0.4
1,744,407 - +0.3
1,744,407 - +0.1
1,744,407 - -0.8
1,744,433 + -0.5
1,744,440 + +1.4
1,744,446 + +2.1
1,744,454 - -0.4
1,744,454 - -0.8
1,744,456 + -0.3
1,744,464 - +0.7
1,744,479 + -0.0
1,744,479 + +0.1
1,744,485 - +0.7
1,744,485 - -0.1
1,744,487 + +0.6
1,744,487 - -0.1
1,744,500 + -0.3
1,744,500 + +0.1
1,744,500 + -0.2
1,744,500 + +0.2
1,744,500 + -1.9
1,744,506 - +1.1
1,744,508 - +0.4
1,744,508 - -0.1
1,744,508 - +0.2
1,744,508 - +0.6
1,744,508 - +1.3
1,744,512 + +0.7
1,744,513 - +0.1
1,744,514 + -0.4
1,744,520 - -0.0
1,744,520 - +0.5
1,744,520 - +0.3
1,744,528 + -0.1
1,744,528 + +0.9
1,744,533 + +0.8
1,744,569 - CCNA_01623 0.13 +0.1
1,744,607 - CCNA_01623 0.22 +0.7
1,744,663 - CCNA_01623 0.35 +0.1
1,744,665 + CCNA_01623 0.36 -0.3
1,744,665 + CCNA_01623 0.36 -0.4
1,744,673 - CCNA_01623 0.38 +0.1
1,744,673 - CCNA_01623 0.38 +0.1
1,744,683 + CCNA_01623 0.40 +0.4
1,744,781 - CCNA_01623 0.64 +0.2
1,744,788 + CCNA_01623 0.65 -0.5
1,744,796 - CCNA_01623 0.67 +0.4
1,744,829 - CCNA_01623 0.75 +0.1
1,744,850 - CCNA_01623 0.80 +0.4
1,744,871 + CCNA_01623 0.85 -0.4
1,744,924 + -1.2
1,744,960 + -0.3
1,744,998 + +0.2
1,745,019 - -0.4
1,745,048 + +0.3
1,745,068 + +1.6
1,745,072 + +0.4
1,745,090 - CCNA_01624 0.13 +0.3
1,745,100 - CCNA_01624 0.15 -0.5
1,745,162 - CCNA_01624 0.25 +0.9
1,745,164 + CCNA_01624 0.26 +0.5
1,745,201 - CCNA_01624 0.32 -0.4
1,745,244 + CCNA_01624 0.39 +0.6
1,745,244 + CCNA_01624 0.39 +0.9
1,745,262 + CCNA_01624 0.42 +0.3
1,745,303 + CCNA_01624 0.49 +0.4

Or see this region's nucleotide sequence