Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01509 and CCNA_01510 are separated by 268 nucleotides CCNA_01510 and CCNA_01511 overlap by 1 nucleotides
CCNA_01509: CCNA_01509 - 3-oxoacyl-(acyl-carrier-protein) synthase III, at 1,619,099 to 1,620,214
_01509
CCNA_01510: CCNA_01510 - hypothetical protein, at 1,620,483 to 1,620,866
_01510
CCNA_01511: CCNA_01511 - sterol desaturase family protein, at 1,620,866 to 1,621,768
_01511
Position (kb)
1620
1621 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1619.493 kb on + strand, within CCNA_01509 at 1619.531 kb on + strand, within CCNA_01509 at 1619.537 kb on - strand, within CCNA_01509 at 1619.562 kb on + strand, within CCNA_01509 at 1619.570 kb on - strand, within CCNA_01509 at 1619.570 kb on - strand, within CCNA_01509 at 1619.570 kb on - strand, within CCNA_01509 at 1619.596 kb on - strand, within CCNA_01509 at 1619.596 kb on - strand, within CCNA_01509 at 1619.648 kb on - strand, within CCNA_01509 at 1619.681 kb on - strand, within CCNA_01509 at 1619.729 kb on - strand, within CCNA_01509 at 1619.791 kb on - strand, within CCNA_01509 at 1619.791 kb on - strand, within CCNA_01509 at 1619.800 kb on - strand, within CCNA_01509 at 1619.834 kb on + strand, within CCNA_01509 at 1619.844 kb on + strand, within CCNA_01509 at 1619.849 kb on + strand, within CCNA_01509 at 1619.852 kb on - strand, within CCNA_01509 at 1619.857 kb on - strand, within CCNA_01509 at 1619.929 kb on + strand, within CCNA_01509 at 1620.027 kb on + strand, within CCNA_01509 at 1620.116 kb on - strand at 1620.139 kb on - strand at 1620.142 kb on + strand at 1620.164 kb on + strand at 1620.177 kb on + strand at 1620.177 kb on + strand at 1620.177 kb on + strand at 1620.177 kb on + strand at 1620.177 kb on + strand at 1620.179 kb on + strand at 1620.179 kb on + strand at 1620.184 kb on + strand at 1620.185 kb on - strand at 1620.185 kb on - strand at 1620.185 kb on - strand at 1620.185 kb on - strand at 1620.185 kb on - strand at 1620.222 kb on + strand at 1620.255 kb on - strand at 1620.295 kb on - strand at 1620.322 kb on + strand at 1620.373 kb on - strand at 1620.480 kb on + strand at 1620.488 kb on - strand at 1620.488 kb on - strand at 1620.488 kb on - strand at 1620.493 kb on - strand at 1620.519 kb on + strand at 1620.556 kb on + strand, within CCNA_01510 at 1620.566 kb on + strand, within CCNA_01510 at 1620.582 kb on + strand, within CCNA_01510 at 1620.582 kb on + strand, within CCNA_01510 at 1620.582 kb on + strand, within CCNA_01510 at 1620.736 kb on + strand, within CCNA_01510 at 1620.744 kb on - strand, within CCNA_01510 at 1620.744 kb on - strand, within CCNA_01510 at 1620.744 kb on - strand, within CCNA_01510 at 1620.821 kb on - strand, within CCNA_01510 at 1620.821 kb on - strand, within CCNA_01510 at 1620.875 kb on + strand at 1620.959 kb on + strand, within CCNA_01511 at 1620.966 kb on - strand, within CCNA_01511 at 1620.967 kb on - strand, within CCNA_01511 at 1620.972 kb on - strand, within CCNA_01511 at 1621.002 kb on + strand, within CCNA_01511 at 1621.007 kb on + strand, within CCNA_01511 at 1621.007 kb on + strand, within CCNA_01511 at 1621.007 kb on + strand, within CCNA_01511 at 1621.007 kb on + strand, within CCNA_01511 at 1621.007 kb on + strand, within CCNA_01511 at 1621.007 kb on + strand, within CCNA_01511 at 1621.007 kb on + strand, within CCNA_01511 at 1621.007 kb on + strand, within CCNA_01511 at 1621.007 kb on + strand, within CCNA_01511 at 1621.007 kb on + strand, within CCNA_01511 at 1621.010 kb on - strand, within CCNA_01511 at 1621.010 kb on - strand, within CCNA_01511 at 1621.010 kb on - strand, within CCNA_01511 at 1621.012 kb on + strand, within CCNA_01511 at 1621.015 kb on - strand, within CCNA_01511 at 1621.015 kb on - strand, within CCNA_01511 at 1621.015 kb on - strand, within CCNA_01511 at 1621.015 kb on - strand, within CCNA_01511 at 1621.034 kb on + strand, within CCNA_01511 at 1621.036 kb on + strand, within CCNA_01511 at 1621.077 kb on - strand, within CCNA_01511 at 1621.109 kb on + strand, within CCNA_01511 at 1621.109 kb on + strand, within CCNA_01511 at 1621.109 kb on + strand, within CCNA_01511 at 1621.127 kb on + strand, within CCNA_01511 at 1621.132 kb on - strand, within CCNA_01511 at 1621.226 kb on - strand, within CCNA_01511 at 1621.226 kb on - strand, within CCNA_01511 at 1621.226 kb on - strand, within CCNA_01511 at 1621.236 kb on - strand, within CCNA_01511 at 1621.273 kb on + strand, within CCNA_01511 at 1621.273 kb on + strand, within CCNA_01511 at 1621.282 kb on - strand, within CCNA_01511 at 1621.373 kb on + strand, within CCNA_01511 at 1621.386 kb on - strand, within CCNA_01511 at 1621.400 kb on - strand, within CCNA_01511 at 1621.410 kb on + strand, within CCNA_01511 at 1621.418 kb on + strand, within CCNA_01511 at 1621.418 kb on + strand, within CCNA_01511 at 1621.420 kb on + strand, within CCNA_01511 at 1621.420 kb on + strand, within CCNA_01511 at 1621.426 kb on - strand, within CCNA_01511 at 1621.428 kb on - strand, within CCNA_01511 at 1621.428 kb on - strand, within CCNA_01511 at 1621.463 kb on - strand, within CCNA_01511 at 1621.502 kb on + strand, within CCNA_01511 at 1621.532 kb on - strand, within CCNA_01511 at 1621.557 kb on - strand, within CCNA_01511 at 1621.566 kb on - strand, within CCNA_01511 at 1621.574 kb on - strand, within CCNA_01511 at 1621.576 kb on - strand, within CCNA_01511 at 1621.592 kb on - strand, within CCNA_01511 at 1621.626 kb on - strand, within CCNA_01511 at 1621.627 kb on + strand, within CCNA_01511 at 1621.627 kb on + strand, within CCNA_01511 at 1621.707 kb on + strand at 1621.715 kb on - strand at 1621.753 kb on + strand at 1621.761 kb on - strand at 1621.761 kb on - strand at 1621.761 kb on - strand at 1621.778 kb on + strand at 1621.814 kb on + strand at 1621.822 kb on - strand at 1621.835 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 1,619,493 + CCNA_01509 0.35 -0.6 1,619,531 + CCNA_01509 0.39 +0.6 1,619,537 - CCNA_01509 0.39 +0.1 1,619,562 + CCNA_01509 0.41 -1.2 1,619,570 - CCNA_01509 0.42 +0.1 1,619,570 - CCNA_01509 0.42 +1.1 1,619,570 - CCNA_01509 0.42 +0.8 1,619,596 - CCNA_01509 0.45 +0.1 1,619,596 - CCNA_01509 0.45 +0.6 1,619,648 - CCNA_01509 0.49 -0.2 1,619,681 - CCNA_01509 0.52 +1.8 1,619,729 - CCNA_01509 0.56 -1.0 1,619,791 - CCNA_01509 0.62 +0.0 1,619,791 - CCNA_01509 0.62 +0.1 1,619,800 - CCNA_01509 0.63 -0.2 1,619,834 + CCNA_01509 0.66 +1.3 1,619,844 + CCNA_01509 0.67 -0.5 1,619,849 + CCNA_01509 0.67 -0.3 1,619,852 - CCNA_01509 0.67 +1.0 1,619,857 - CCNA_01509 0.68 +1.1 1,619,929 + CCNA_01509 0.74 -0.0 1,620,027 + CCNA_01509 0.83 +0.2 1,620,116 - +0.0 1,620,139 - +0.1 1,620,142 + -0.2 1,620,164 + -0.0 1,620,177 + +0.8 1,620,177 + +0.3 1,620,177 + -0.1 1,620,177 + -3.4 1,620,177 + -0.4 1,620,179 + +0.2 1,620,179 + -0.9 1,620,184 + -0.1 1,620,185 - +0.1 1,620,185 - +0.9 1,620,185 - +0.6 1,620,185 - -0.1 1,620,185 - -0.4 1,620,222 + -0.4 1,620,255 - +0.2 1,620,295 - +1.0 1,620,322 + -0.9 1,620,373 - +0.1 1,620,480 + +0.1 1,620,488 - +1.4 1,620,488 - +0.0 1,620,488 - +0.1 1,620,493 - -0.6 1,620,519 + +0.3 1,620,556 + CCNA_01510 0.19 -0.1 1,620,566 + CCNA_01510 0.22 -1.8 1,620,582 + CCNA_01510 0.26 -1.5 1,620,582 + CCNA_01510 0.26 -1.6 1,620,582 + CCNA_01510 0.26 +0.1 1,620,736 + CCNA_01510 0.66 -0.0 1,620,744 - CCNA_01510 0.68 -0.4 1,620,744 - CCNA_01510 0.68 +0.6 1,620,744 - CCNA_01510 0.68 -0.5 1,620,821 - CCNA_01510 0.88 -0.5 1,620,821 - CCNA_01510 0.88 -0.1 1,620,875 + -0.4 1,620,959 + CCNA_01511 0.10 +0.2 1,620,966 - CCNA_01511 0.11 +0.6 1,620,967 - CCNA_01511 0.11 -2.0 1,620,972 - CCNA_01511 0.12 -0.1 1,621,002 + CCNA_01511 0.15 -1.7 1,621,007 + CCNA_01511 0.16 -0.4 1,621,007 + CCNA_01511 0.16 -0.1 1,621,007 + CCNA_01511 0.16 +0.9 1,621,007 + CCNA_01511 0.16 +0.9 1,621,007 + CCNA_01511 0.16 -1.1 1,621,007 + CCNA_01511 0.16 +1.0 1,621,007 + CCNA_01511 0.16 -1.2 1,621,007 + CCNA_01511 0.16 +0.3 1,621,007 + CCNA_01511 0.16 -0.9 1,621,007 + CCNA_01511 0.16 -0.8 1,621,010 - CCNA_01511 0.16 -2.2 1,621,010 - CCNA_01511 0.16 +0.9 1,621,010 - CCNA_01511 0.16 +0.6 1,621,012 + CCNA_01511 0.16 -1.0 1,621,015 - CCNA_01511 0.17 +0.2 1,621,015 - CCNA_01511 0.17 +0.7 1,621,015 - CCNA_01511 0.17 +1.4 1,621,015 - CCNA_01511 0.17 -0.2 1,621,034 + CCNA_01511 0.19 +0.2 1,621,036 + CCNA_01511 0.19 -0.8 1,621,077 - CCNA_01511 0.23 +0.7 1,621,109 + CCNA_01511 0.27 +0.1 1,621,109 + CCNA_01511 0.27 -0.9 1,621,109 + CCNA_01511 0.27 -2.0 1,621,127 + CCNA_01511 0.29 -0.3 1,621,132 - CCNA_01511 0.29 -0.1 1,621,226 - CCNA_01511 0.40 -0.3 1,621,226 - CCNA_01511 0.40 -0.2 1,621,226 - CCNA_01511 0.40 -0.3 1,621,236 - CCNA_01511 0.41 +1.0 1,621,273 + CCNA_01511 0.45 -0.1 1,621,273 + CCNA_01511 0.45 +0.9 1,621,282 - CCNA_01511 0.46 +0.7 1,621,373 + CCNA_01511 0.56 +0.6 1,621,386 - CCNA_01511 0.58 +0.7 1,621,400 - CCNA_01511 0.59 -1.2 1,621,410 + CCNA_01511 0.60 +0.6 1,621,418 + CCNA_01511 0.61 +0.5 1,621,418 + CCNA_01511 0.61 +2.1 1,621,420 + CCNA_01511 0.61 -1.2 1,621,420 + CCNA_01511 0.61 -1.7 1,621,426 - CCNA_01511 0.62 +0.5 1,621,428 - CCNA_01511 0.62 -0.0 1,621,428 - CCNA_01511 0.62 -1.4 1,621,463 - CCNA_01511 0.66 -0.3 1,621,502 + CCNA_01511 0.70 -0.7 1,621,532 - CCNA_01511 0.74 -0.3 1,621,557 - CCNA_01511 0.77 -0.6 1,621,566 - CCNA_01511 0.78 -0.3 1,621,574 - CCNA_01511 0.78 -0.4 1,621,576 - CCNA_01511 0.79 -1.5 1,621,592 - CCNA_01511 0.80 +1.3 1,621,626 - CCNA_01511 0.84 +0.3 1,621,627 + CCNA_01511 0.84 +0.4 1,621,627 + CCNA_01511 0.84 +1.0 1,621,707 + -0.4 1,621,715 - -0.0 1,621,753 + -0.4 1,621,761 - +1.0 1,621,761 - -0.1 1,621,761 - -0.6 1,621,778 + +0.4 1,621,814 + +0.2 1,621,822 - +0.1 1,621,835 - +0.9
Or see this region's nucleotide sequence