Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01467

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01465 and CCNA_01466 are separated by 121 nucleotidesCCNA_01466 and CCNA_01467 are separated by 122 nucleotidesCCNA_01467 and CCNA_01468 are separated by 8 nucleotidesCCNA_01468 and CCNA_01469 overlap by 4 nucleotidesCCNA_01469 and CCNA_01470 overlap by 1 nucleotides CCNA_01465: CCNA_01465 - methyl-accepting chemotaxis protein, at 1,572,606 to 1,574,201 _01465 CCNA_01466: CCNA_01466 - hypothetical protein, at 1,574,323 to 1,574,589 _01466 CCNA_01467: CCNA_01467 - cytochrome cbb3 oxidase subunit I ccoN, at 1,574,712 to 1,576,358 _01467 CCNA_01468: CCNA_01468 - cytochrome cbb3 oxidase, cytochrome c subunit ccoO, at 1,576,367 to 1,577,110 _01468 CCNA_01469: CCNA_01469 - cytochrome cbb3 oxidase, subunit ccoQ, at 1,577,107 to 1,577,274 _01469 CCNA_01470: CCNA_01470 - cytochrome cbb3 oxidase, diheme subunit, membrane-bound ccoP, at 1,577,274 to 1,578,140 _01470 Position (kb) 1574 1575 1576 1577Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1573.740 kb on - strand, within CCNA_01465at 1573.825 kb on + strand, within CCNA_01465at 1573.826 kb on - strand, within CCNA_01465at 1573.833 kb on - strand, within CCNA_01465at 1573.844 kb on - strand, within CCNA_01465at 1573.849 kb on + strand, within CCNA_01465at 1573.859 kb on + strand, within CCNA_01465at 1573.859 kb on + strand, within CCNA_01465at 1573.859 kb on + strand, within CCNA_01465at 1573.866 kb on + strand, within CCNA_01465at 1573.867 kb on - strand, within CCNA_01465at 1573.874 kb on - strand, within CCNA_01465at 1573.887 kb on + strand, within CCNA_01465at 1573.892 kb on + strand, within CCNA_01465at 1573.895 kb on - strand, within CCNA_01465at 1573.940 kb on - strand, within CCNA_01465at 1573.940 kb on - strand, within CCNA_01465at 1573.984 kb on - strand, within CCNA_01465at 1574.061 kb on + strandat 1574.066 kb on + strandat 1574.112 kb on - strandat 1574.117 kb on - strandat 1574.124 kb on + strandat 1574.143 kb on + strandat 1574.153 kb on + strandat 1574.221 kb on - strandat 1574.231 kb on - strandat 1574.243 kb on + strandat 1574.243 kb on + strandat 1574.243 kb on + strandat 1574.251 kb on - strandat 1574.251 kb on - strandat 1574.251 kb on - strandat 1574.296 kb on + strandat 1574.316 kb on + strandat 1574.322 kb on - strandat 1574.322 kb on - strandat 1574.322 kb on - strandat 1574.322 kb on - strandat 1574.336 kb on - strandat 1574.338 kb on + strandat 1574.346 kb on - strandat 1574.380 kb on - strand, within CCNA_01466at 1574.416 kb on + strand, within CCNA_01466at 1574.424 kb on - strand, within CCNA_01466at 1574.426 kb on + strand, within CCNA_01466at 1574.426 kb on + strand, within CCNA_01466at 1574.434 kb on - strand, within CCNA_01466at 1574.465 kb on + strand, within CCNA_01466at 1574.470 kb on + strand, within CCNA_01466at 1574.527 kb on - strand, within CCNA_01466at 1574.538 kb on - strand, within CCNA_01466at 1574.565 kb on - strandat 1574.589 kb on + strandat 1574.610 kb on + strandat 1574.613 kb on - strandat 1574.614 kb on + strandat 1574.614 kb on + strandat 1574.647 kb on - strandat 1574.647 kb on - strandat 1574.647 kb on - strandat 1574.647 kb on - strandat 1574.647 kb on - strandat 1574.647 kb on - strandat 1574.647 kb on - strandat 1574.674 kb on - strandat 1574.704 kb on - strandat 1574.706 kb on + strandat 1574.714 kb on - strandat 1574.763 kb on + strandat 1574.801 kb on + strandat 1574.801 kb on + strandat 1574.801 kb on + strandat 1574.801 kb on + strandat 1574.809 kb on - strandat 1574.953 kb on + strand, within CCNA_01467at 1574.970 kb on + strand, within CCNA_01467at 1574.994 kb on + strand, within CCNA_01467at 1575.062 kb on - strand, within CCNA_01467at 1575.097 kb on + strand, within CCNA_01467at 1575.103 kb on - strand, within CCNA_01467at 1575.105 kb on - strand, within CCNA_01467at 1575.134 kb on + strand, within CCNA_01467at 1575.145 kb on + strand, within CCNA_01467at 1575.146 kb on + strand, within CCNA_01467at 1575.154 kb on - strand, within CCNA_01467at 1575.166 kb on + strand, within CCNA_01467at 1575.174 kb on - strand, within CCNA_01467at 1575.186 kb on + strand, within CCNA_01467at 1575.277 kb on + strand, within CCNA_01467at 1575.301 kb on + strand, within CCNA_01467at 1575.309 kb on - strand, within CCNA_01467at 1575.326 kb on - strand, within CCNA_01467at 1575.378 kb on + strand, within CCNA_01467at 1575.386 kb on - strand, within CCNA_01467at 1575.386 kb on - strand, within CCNA_01467at 1575.424 kb on + strand, within CCNA_01467at 1575.442 kb on - strand, within CCNA_01467at 1575.493 kb on - strand, within CCNA_01467at 1575.493 kb on - strand, within CCNA_01467at 1575.493 kb on - strand, within CCNA_01467at 1575.493 kb on - strand, within CCNA_01467at 1575.503 kb on - strand, within CCNA_01467at 1575.517 kb on + strand, within CCNA_01467at 1575.517 kb on + strand, within CCNA_01467at 1575.525 kb on - strand, within CCNA_01467at 1575.529 kb on - strand, within CCNA_01467at 1575.530 kb on - strand, within CCNA_01467at 1575.553 kb on + strand, within CCNA_01467at 1575.587 kb on + strand, within CCNA_01467at 1575.587 kb on - strand, within CCNA_01467at 1575.621 kb on + strand, within CCNA_01467at 1575.629 kb on - strand, within CCNA_01467at 1575.629 kb on - strand, within CCNA_01467at 1575.629 kb on - strand, within CCNA_01467at 1575.650 kb on + strand, within CCNA_01467at 1575.650 kb on + strand, within CCNA_01467at 1575.658 kb on - strand, within CCNA_01467at 1575.674 kb on + strand, within CCNA_01467at 1575.682 kb on - strand, within CCNA_01467at 1575.684 kb on + strand, within CCNA_01467at 1575.693 kb on + strand, within CCNA_01467at 1575.696 kb on + strand, within CCNA_01467at 1575.698 kb on + strand, within CCNA_01467at 1575.698 kb on + strand, within CCNA_01467at 1575.698 kb on + strand, within CCNA_01467at 1575.698 kb on + strand, within CCNA_01467at 1575.698 kb on + strand, within CCNA_01467at 1575.701 kb on + strand, within CCNA_01467at 1575.706 kb on - strand, within CCNA_01467at 1575.706 kb on - strand, within CCNA_01467at 1575.723 kb on + strand, within CCNA_01467at 1575.723 kb on + strand, within CCNA_01467at 1575.728 kb on + strand, within CCNA_01467at 1575.731 kb on - strand, within CCNA_01467at 1575.742 kb on - strand, within CCNA_01467at 1575.750 kb on + strand, within CCNA_01467at 1575.797 kb on - strand, within CCNA_01467at 1575.811 kb on - strand, within CCNA_01467at 1575.821 kb on + strand, within CCNA_01467at 1575.848 kb on - strand, within CCNA_01467at 1575.867 kb on + strand, within CCNA_01467at 1575.899 kb on - strand, within CCNA_01467at 1575.957 kb on + strand, within CCNA_01467at 1575.969 kb on + strand, within CCNA_01467at 1575.974 kb on + strand, within CCNA_01467at 1575.977 kb on - strand, within CCNA_01467at 1575.977 kb on - strand, within CCNA_01467at 1575.977 kb on - strand, within CCNA_01467at 1576.007 kb on + strand, within CCNA_01467at 1576.012 kb on + strand, within CCNA_01467at 1576.020 kb on - strand, within CCNA_01467at 1576.055 kb on - strand, within CCNA_01467at 1576.073 kb on + strand, within CCNA_01467at 1576.086 kb on + strand, within CCNA_01467at 1576.100 kb on + strand, within CCNA_01467at 1576.103 kb on - strand, within CCNA_01467at 1576.140 kb on + strand, within CCNA_01467at 1576.148 kb on - strand, within CCNA_01467at 1576.154 kb on + strand, within CCNA_01467at 1576.156 kb on + strand, within CCNA_01467at 1576.179 kb on + strand, within CCNA_01467at 1576.206 kb on + strandat 1576.207 kb on - strandat 1576.253 kb on + strandat 1576.352 kb on + strandat 1576.369 kb on - strandat 1576.433 kb on - strandat 1576.438 kb on - strandat 1576.469 kb on + strand, within CCNA_01468at 1576.482 kb on - strand, within CCNA_01468at 1576.501 kb on + strand, within CCNA_01468at 1576.501 kb on + strand, within CCNA_01468at 1576.501 kb on + strand, within CCNA_01468at 1576.502 kb on + strand, within CCNA_01468at 1576.518 kb on + strand, within CCNA_01468at 1576.534 kb on - strand, within CCNA_01468at 1576.535 kb on - strand, within CCNA_01468at 1576.636 kb on - strand, within CCNA_01468at 1576.643 kb on + strand, within CCNA_01468at 1576.651 kb on - strand, within CCNA_01468at 1576.685 kb on - strand, within CCNA_01468at 1576.687 kb on + strand, within CCNA_01468at 1576.691 kb on + strand, within CCNA_01468at 1576.691 kb on + strand, within CCNA_01468at 1576.695 kb on - strand, within CCNA_01468at 1576.700 kb on - strand, within CCNA_01468at 1576.700 kb on - strand, within CCNA_01468at 1576.700 kb on - strand, within CCNA_01468at 1576.753 kb on - strand, within CCNA_01468at 1576.759 kb on + strand, within CCNA_01468at 1576.767 kb on - strand, within CCNA_01468at 1576.790 kb on + strand, within CCNA_01468at 1576.809 kb on + strand, within CCNA_01468at 1576.849 kb on + strand, within CCNA_01468at 1576.870 kb on + strand, within CCNA_01468at 1576.881 kb on - strand, within CCNA_01468at 1576.896 kb on - strand, within CCNA_01468at 1576.938 kb on - strand, within CCNA_01468at 1577.028 kb on - strand, within CCNA_01468at 1577.038 kb on - strandat 1577.048 kb on - strandat 1577.053 kb on + strandat 1577.126 kb on - strand, within CCNA_01469at 1577.149 kb on - strand, within CCNA_01469at 1577.159 kb on - strand, within CCNA_01469at 1577.159 kb on - strand, within CCNA_01469at 1577.160 kb on + strand, within CCNA_01469at 1577.168 kb on - strand, within CCNA_01469at 1577.170 kb on + strand, within CCNA_01469at 1577.175 kb on + strand, within CCNA_01469at 1577.178 kb on - strand, within CCNA_01469at 1577.195 kb on + strand, within CCNA_01469at 1577.248 kb on + strand, within CCNA_01469at 1577.256 kb on - strand, within CCNA_01469at 1577.297 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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1,573,740 - CCNA_01465 0.71 +0.6
1,573,825 + CCNA_01465 0.76 -1.6
1,573,826 - CCNA_01465 0.76 -1.1
1,573,833 - CCNA_01465 0.77 -1.3
1,573,844 - CCNA_01465 0.78 -0.5
1,573,849 + CCNA_01465 0.78 -0.0
1,573,859 + CCNA_01465 0.79 +0.8
1,573,859 + CCNA_01465 0.79 -0.3
1,573,859 + CCNA_01465 0.79 +0.5
1,573,866 + CCNA_01465 0.79 +0.4
1,573,867 - CCNA_01465 0.79 +0.3
1,573,874 - CCNA_01465 0.79 -0.8
1,573,887 + CCNA_01465 0.80 +0.8
1,573,892 + CCNA_01465 0.81 -0.1
1,573,895 - CCNA_01465 0.81 -0.1
1,573,940 - CCNA_01465 0.84 -0.8
1,573,940 - CCNA_01465 0.84 +0.2
1,573,984 - CCNA_01465 0.86 -2.8
1,574,061 + +1.1
1,574,066 + +0.1
1,574,112 - -0.2
1,574,117 - +0.1
1,574,124 + +1.2
1,574,143 + +0.2
1,574,153 + +0.5
1,574,221 - +0.1
1,574,231 - +0.6
1,574,243 + +0.4
1,574,243 + -1.5
1,574,243 + +1.1
1,574,251 - -2.1
1,574,251 - +0.6
1,574,251 - -0.3
1,574,296 + +0.1
1,574,316 + -0.5
1,574,322 - +0.0
1,574,322 - -0.6
1,574,322 - -1.0
1,574,322 - +0.1
1,574,336 - -0.8
1,574,338 + -0.3
1,574,346 - +0.3
1,574,380 - CCNA_01466 0.21 -1.0
1,574,416 + CCNA_01466 0.35 -0.7
1,574,424 - CCNA_01466 0.38 -0.0
1,574,426 + CCNA_01466 0.39 -1.4
1,574,426 + CCNA_01466 0.39 +0.3
1,574,434 - CCNA_01466 0.42 -1.5
1,574,465 + CCNA_01466 0.53 -1.3
1,574,470 + CCNA_01466 0.55 +0.3
1,574,527 - CCNA_01466 0.76 +0.6
1,574,538 - CCNA_01466 0.81 +1.1
1,574,565 - -0.6
1,574,589 + -1.6
1,574,610 + -1.7
1,574,613 - +0.8
1,574,614 + -2.7
1,574,614 + -0.3
1,574,647 - -0.0
1,574,647 - +0.2
1,574,647 - -1.1
1,574,647 - -1.6
1,574,647 - -0.5
1,574,647 - -0.6
1,574,647 - +0.7
1,574,674 - -1.1
1,574,704 - +0.1
1,574,706 + -0.4
1,574,714 - +0.5
1,574,763 + -1.4
1,574,801 + -0.5
1,574,801 + -1.1
1,574,801 + -0.7
1,574,801 + +0.0
1,574,809 - +0.9
1,574,953 + CCNA_01467 0.15 +0.4
1,574,970 + CCNA_01467 0.16 -0.6
1,574,994 + CCNA_01467 0.17 -0.8
1,575,062 - CCNA_01467 0.21 -1.1
1,575,097 + CCNA_01467 0.23 -0.9
1,575,103 - CCNA_01467 0.24 -2.7
1,575,105 - CCNA_01467 0.24 -2.0
1,575,134 + CCNA_01467 0.26 -0.2
1,575,145 + CCNA_01467 0.26 -1.0
1,575,146 + CCNA_01467 0.26 -0.6
1,575,154 - CCNA_01467 0.27 +0.6
1,575,166 + CCNA_01467 0.28 -1.0
1,575,174 - CCNA_01467 0.28 -0.8
1,575,186 + CCNA_01467 0.29 -2.8
1,575,277 + CCNA_01467 0.34 -0.2
1,575,301 + CCNA_01467 0.36 +2.1
1,575,309 - CCNA_01467 0.36 -0.7
1,575,326 - CCNA_01467 0.37 -1.1
1,575,378 + CCNA_01467 0.40 +0.6
1,575,386 - CCNA_01467 0.41 -0.8
1,575,386 - CCNA_01467 0.41 -1.8
1,575,424 + CCNA_01467 0.43 -0.6
1,575,442 - CCNA_01467 0.44 +0.4
1,575,493 - CCNA_01467 0.47 +1.1
1,575,493 - CCNA_01467 0.47 -0.6
1,575,493 - CCNA_01467 0.47 +0.2
1,575,493 - CCNA_01467 0.47 -1.9
1,575,503 - CCNA_01467 0.48 -0.8
1,575,517 + CCNA_01467 0.49 -0.6
1,575,517 + CCNA_01467 0.49 -0.3
1,575,525 - CCNA_01467 0.49 -1.4
1,575,529 - CCNA_01467 0.50 +0.3
1,575,530 - CCNA_01467 0.50 -0.2
1,575,553 + CCNA_01467 0.51 -1.0
1,575,587 + CCNA_01467 0.53 -0.7
1,575,587 - CCNA_01467 0.53 +0.6
1,575,621 + CCNA_01467 0.55 -2.0
1,575,629 - CCNA_01467 0.56 -2.1
1,575,629 - CCNA_01467 0.56 +0.4
1,575,629 - CCNA_01467 0.56 -2.0
1,575,650 + CCNA_01467 0.57 -0.4
1,575,650 + CCNA_01467 0.57 -0.5
1,575,658 - CCNA_01467 0.57 +0.3
1,575,674 + CCNA_01467 0.58 -1.4
1,575,682 - CCNA_01467 0.59 -0.8
1,575,684 + CCNA_01467 0.59 -1.5
1,575,693 + CCNA_01467 0.60 -1.4
1,575,696 + CCNA_01467 0.60 -2.3
1,575,698 + CCNA_01467 0.60 -1.8
1,575,698 + CCNA_01467 0.60 -2.0
1,575,698 + CCNA_01467 0.60 -0.9
1,575,698 + CCNA_01467 0.60 -0.5
1,575,698 + CCNA_01467 0.60 -1.5
1,575,701 + CCNA_01467 0.60 +2.6
1,575,706 - CCNA_01467 0.60 +0.7
1,575,706 - CCNA_01467 0.60 -1.0
1,575,723 + CCNA_01467 0.61 -1.9
1,575,723 + CCNA_01467 0.61 -1.6
1,575,728 + CCNA_01467 0.62 -0.8
1,575,731 - CCNA_01467 0.62 -1.9
1,575,742 - CCNA_01467 0.63 +0.1
1,575,750 + CCNA_01467 0.63 -0.6
1,575,797 - CCNA_01467 0.66 -1.6
1,575,811 - CCNA_01467 0.67 -0.9
1,575,821 + CCNA_01467 0.67 -1.0
1,575,848 - CCNA_01467 0.69 -0.2
1,575,867 + CCNA_01467 0.70 -2.7
1,575,899 - CCNA_01467 0.72 +0.6
1,575,957 + CCNA_01467 0.76 -0.1
1,575,969 + CCNA_01467 0.76 +0.5
1,575,974 + CCNA_01467 0.77 -0.6
1,575,977 - CCNA_01467 0.77 +0.9
1,575,977 - CCNA_01467 0.77 -1.6
1,575,977 - CCNA_01467 0.77 -0.9
1,576,007 + CCNA_01467 0.79 -0.8
1,576,012 + CCNA_01467 0.79 -2.3
1,576,020 - CCNA_01467 0.79 +0.5
1,576,055 - CCNA_01467 0.82 -0.6
1,576,073 + CCNA_01467 0.83 -2.6
1,576,086 + CCNA_01467 0.83 -0.8
1,576,100 + CCNA_01467 0.84 +1.6
1,576,103 - CCNA_01467 0.84 -0.3
1,576,140 + CCNA_01467 0.87 -0.7
1,576,148 - CCNA_01467 0.87 -0.6
1,576,154 + CCNA_01467 0.88 -1.3
1,576,156 + CCNA_01467 0.88 -1.7
1,576,179 + CCNA_01467 0.89 -1.4
1,576,206 + -0.1
1,576,207 - -1.3
1,576,253 + -1.5
1,576,352 + -0.4
1,576,369 - +0.5
1,576,433 - -0.9
1,576,438 - -0.6
1,576,469 + CCNA_01468 0.14 -0.2
1,576,482 - CCNA_01468 0.15 +2.1
1,576,501 + CCNA_01468 0.18 -0.4
1,576,501 + CCNA_01468 0.18 +0.5
1,576,501 + CCNA_01468 0.18 -0.6
1,576,502 + CCNA_01468 0.18 +0.4
1,576,518 + CCNA_01468 0.20 -0.7
1,576,534 - CCNA_01468 0.22 -0.8
1,576,535 - CCNA_01468 0.23 -1.9
1,576,636 - CCNA_01468 0.36 -1.4
1,576,643 + CCNA_01468 0.37 +0.4
1,576,651 - CCNA_01468 0.38 -0.3
1,576,685 - CCNA_01468 0.43 -0.3
1,576,687 + CCNA_01468 0.43 -0.1
1,576,691 + CCNA_01468 0.44 -0.2
1,576,691 + CCNA_01468 0.44 -0.3
1,576,695 - CCNA_01468 0.44 +1.1
1,576,700 - CCNA_01468 0.45 -1.3
1,576,700 - CCNA_01468 0.45 +0.7
1,576,700 - CCNA_01468 0.45 -2.1
1,576,753 - CCNA_01468 0.52 -0.9
1,576,759 + CCNA_01468 0.53 -0.6
1,576,767 - CCNA_01468 0.54 -1.2
1,576,790 + CCNA_01468 0.57 +0.2
1,576,809 + CCNA_01468 0.59 -0.2
1,576,849 + CCNA_01468 0.65 -1.7
1,576,870 + CCNA_01468 0.68 +0.1
1,576,881 - CCNA_01468 0.69 -0.5
1,576,896 - CCNA_01468 0.71 -0.5
1,576,938 - CCNA_01468 0.77 -0.5
1,577,028 - CCNA_01468 0.89 -0.3
1,577,038 - -0.8
1,577,048 - +0.9
1,577,053 + -1.6
1,577,126 - CCNA_01469 0.11 -1.6
1,577,149 - CCNA_01469 0.25 -1.5
1,577,159 - CCNA_01469 0.31 -0.5
1,577,159 - CCNA_01469 0.31 +0.5
1,577,160 + CCNA_01469 0.32 -0.2
1,577,168 - CCNA_01469 0.36 -1.2
1,577,170 + CCNA_01469 0.38 -0.2
1,577,175 + CCNA_01469 0.40 +1.0
1,577,178 - CCNA_01469 0.42 -0.9
1,577,195 + CCNA_01469 0.52 +0.2
1,577,248 + CCNA_01469 0.84 +1.2
1,577,256 - CCNA_01469 0.89 -0.7
1,577,297 + -0.1

Or see this region's nucleotide sequence