Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01383

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01382 and CCNA_01383 are separated by 4 nucleotidesCCNA_01383 and CCNA_01384 are separated by 93 nucleotides CCNA_01382: CCNA_01382 - long-chain-fatty-acid--CoA ligase, at 1,498,487 to 1,500,238 _01382 CCNA_01383: CCNA_01383 - hypothetical protein, at 1,500,243 to 1,500,605 _01383 CCNA_01384: CCNA_01384 - amidase family protein, at 1,500,699 to 1,502,186 _01384 Position (kb) 1500 1501Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1499.252 kb on + strand, within CCNA_01382at 1499.283 kb on - strand, within CCNA_01382at 1499.362 kb on - strand, within CCNA_01382at 1499.620 kb on - strand, within CCNA_01382at 1499.671 kb on - strand, within CCNA_01382at 1499.837 kb on + strand, within CCNA_01382at 1499.837 kb on + strand, within CCNA_01382at 1499.837 kb on + strand, within CCNA_01382at 1499.837 kb on + strand, within CCNA_01382at 1499.837 kb on + strand, within CCNA_01382at 1499.845 kb on - strand, within CCNA_01382at 1499.845 kb on - strand, within CCNA_01382at 1499.981 kb on + strand, within CCNA_01382at 1500.019 kb on - strand, within CCNA_01382at 1500.157 kb on + strandat 1500.157 kb on + strandat 1500.165 kb on - strandat 1500.165 kb on - strandat 1500.246 kb on + strandat 1500.246 kb on + strandat 1500.246 kb on + strandat 1500.251 kb on + strandat 1500.253 kb on - strandat 1500.254 kb on - strandat 1500.254 kb on - strandat 1500.259 kb on - strandat 1500.259 kb on - strandat 1500.309 kb on + strand, within CCNA_01383at 1500.309 kb on + strand, within CCNA_01383at 1500.309 kb on + strand, within CCNA_01383at 1500.309 kb on + strand, within CCNA_01383at 1500.309 kb on + strand, within CCNA_01383at 1500.309 kb on + strand, within CCNA_01383at 1500.309 kb on + strand, within CCNA_01383at 1500.312 kb on - strand, within CCNA_01383at 1500.317 kb on - strand, within CCNA_01383at 1500.317 kb on - strand, within CCNA_01383at 1500.334 kb on + strand, within CCNA_01383at 1500.334 kb on + strand, within CCNA_01383at 1500.443 kb on + strand, within CCNA_01383at 1500.462 kb on + strand, within CCNA_01383at 1500.462 kb on + strand, within CCNA_01383at 1500.573 kb on - strandat 1500.588 kb on + strandat 1500.596 kb on - strandat 1500.630 kb on + strandat 1500.638 kb on - strandat 1500.665 kb on + strandat 1500.686 kb on + strandat 1500.742 kb on + strandat 1500.750 kb on - strandat 1500.785 kb on - strandat 1500.819 kb on + strandat 1500.827 kb on - strandat 1500.827 kb on - strandat 1500.829 kb on + strandat 1500.842 kb on - strandat 1500.842 kb on - strandat 1500.892 kb on + strand, within CCNA_01384at 1500.937 kb on - strand, within CCNA_01384at 1500.951 kb on - strand, within CCNA_01384at 1500.951 kb on - strand, within CCNA_01384at 1500.958 kb on + strand, within CCNA_01384at 1500.966 kb on - strand, within CCNA_01384at 1500.969 kb on + strand, within CCNA_01384at 1500.977 kb on - strand, within CCNA_01384at 1500.987 kb on + strand, within CCNA_01384at 1500.991 kb on + strand, within CCNA_01384at 1500.997 kb on + strand, within CCNA_01384at 1501.015 kb on - strand, within CCNA_01384at 1501.021 kb on + strand, within CCNA_01384at 1501.078 kb on + strand, within CCNA_01384at 1501.078 kb on + strand, within CCNA_01384at 1501.097 kb on + strand, within CCNA_01384at 1501.105 kb on - strand, within CCNA_01384at 1501.106 kb on - strand, within CCNA_01384at 1501.111 kb on - strand, within CCNA_01384at 1501.111 kb on - strand, within CCNA_01384at 1501.112 kb on + strand, within CCNA_01384at 1501.140 kb on + strand, within CCNA_01384at 1501.141 kb on + strand, within CCNA_01384at 1501.155 kb on - strand, within CCNA_01384at 1501.211 kb on - strand, within CCNA_01384at 1501.211 kb on - strand, within CCNA_01384at 1501.269 kb on - strand, within CCNA_01384at 1501.272 kb on - strand, within CCNA_01384at 1501.295 kb on - strand, within CCNA_01384at 1501.351 kb on + strand, within CCNA_01384at 1501.351 kb on + strand, within CCNA_01384at 1501.352 kb on + strand, within CCNA_01384at 1501.359 kb on - strand, within CCNA_01384at 1501.360 kb on - strand, within CCNA_01384at 1501.393 kb on + strand, within CCNA_01384at 1501.434 kb on + strand, within CCNA_01384at 1501.469 kb on - strand, within CCNA_01384at 1501.473 kb on + strand, within CCNA_01384at 1501.495 kb on - strand, within CCNA_01384at 1501.538 kb on + strand, within CCNA_01384at 1501.553 kb on + strand, within CCNA_01384at 1501.594 kb on + strand, within CCNA_01384at 1501.599 kb on + strand, within CCNA_01384

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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1,499,252 + CCNA_01382 0.44 -0.9
1,499,283 - CCNA_01382 0.45 +0.0
1,499,362 - CCNA_01382 0.50 +0.4
1,499,620 - CCNA_01382 0.65 +0.2
1,499,671 - CCNA_01382 0.68 +0.1
1,499,837 + CCNA_01382 0.77 +0.7
1,499,837 + CCNA_01382 0.77 -3.0
1,499,837 + CCNA_01382 0.77 -0.0
1,499,837 + CCNA_01382 0.77 +0.2
1,499,837 + CCNA_01382 0.77 +1.6
1,499,845 - CCNA_01382 0.78 +0.4
1,499,845 - CCNA_01382 0.78 +0.4
1,499,981 + CCNA_01382 0.85 +0.2
1,500,019 - CCNA_01382 0.87 -0.4
1,500,157 + +0.2
1,500,157 + +0.1
1,500,165 - -2.1
1,500,165 - -1.8
1,500,246 + +0.7
1,500,246 + -0.8
1,500,246 + +0.6
1,500,251 + +2.2
1,500,253 - +0.4
1,500,254 - -0.2
1,500,254 - -0.3
1,500,259 - -0.2
1,500,259 - -1.7
1,500,309 + CCNA_01383 0.18 +0.6
1,500,309 + CCNA_01383 0.18 +0.5
1,500,309 + CCNA_01383 0.18 +0.1
1,500,309 + CCNA_01383 0.18 +0.5
1,500,309 + CCNA_01383 0.18 +0.1
1,500,309 + CCNA_01383 0.18 -1.0
1,500,309 + CCNA_01383 0.18 +1.2
1,500,312 - CCNA_01383 0.19 +0.3
1,500,317 - CCNA_01383 0.20 -0.1
1,500,317 - CCNA_01383 0.20 -0.2
1,500,334 + CCNA_01383 0.25 -0.1
1,500,334 + CCNA_01383 0.25 -2.0
1,500,443 + CCNA_01383 0.55 +1.0
1,500,462 + CCNA_01383 0.60 +0.1
1,500,462 + CCNA_01383 0.60 +1.1
1,500,573 - +0.1
1,500,588 + +0.2
1,500,596 - +0.1
1,500,630 + +0.4
1,500,638 - -0.9
1,500,665 + -1.3
1,500,686 + -0.1
1,500,742 + +0.5
1,500,750 - +0.6
1,500,785 - +1.1
1,500,819 + +0.3
1,500,827 - +0.7
1,500,827 - +0.5
1,500,829 + +0.4
1,500,842 - -0.2
1,500,842 - +0.6
1,500,892 + CCNA_01384 0.13 -1.3
1,500,937 - CCNA_01384 0.16 +0.6
1,500,951 - CCNA_01384 0.17 +0.8
1,500,951 - CCNA_01384 0.17 -1.0
1,500,958 + CCNA_01384 0.17 -1.6
1,500,966 - CCNA_01384 0.18 +0.4
1,500,969 + CCNA_01384 0.18 +0.9
1,500,977 - CCNA_01384 0.19 -0.9
1,500,987 + CCNA_01384 0.19 +0.6
1,500,991 + CCNA_01384 0.20 +1.1
1,500,997 + CCNA_01384 0.20 -1.0
1,501,015 - CCNA_01384 0.21 +0.2
1,501,021 + CCNA_01384 0.22 +0.9
1,501,078 + CCNA_01384 0.25 +0.8
1,501,078 + CCNA_01384 0.25 -1.7
1,501,097 + CCNA_01384 0.27 -0.3
1,501,105 - CCNA_01384 0.27 +0.2
1,501,106 - CCNA_01384 0.27 -0.0
1,501,111 - CCNA_01384 0.28 -1.3
1,501,111 - CCNA_01384 0.28 +0.4
1,501,112 + CCNA_01384 0.28 -0.9
1,501,140 + CCNA_01384 0.30 +0.6
1,501,141 + CCNA_01384 0.30 +0.1
1,501,155 - CCNA_01384 0.31 +0.1
1,501,211 - CCNA_01384 0.34 +1.1
1,501,211 - CCNA_01384 0.34 +0.1
1,501,269 - CCNA_01384 0.38 +1.3
1,501,272 - CCNA_01384 0.39 -0.3
1,501,295 - CCNA_01384 0.40 -0.1
1,501,351 + CCNA_01384 0.44 +0.4
1,501,351 + CCNA_01384 0.44 +0.3
1,501,352 + CCNA_01384 0.44 +0.0
1,501,359 - CCNA_01384 0.44 +0.1
1,501,360 - CCNA_01384 0.44 +0.2
1,501,393 + CCNA_01384 0.47 +0.4
1,501,434 + CCNA_01384 0.49 +0.9
1,501,469 - CCNA_01384 0.52 +0.8
1,501,473 + CCNA_01384 0.52 +0.5
1,501,495 - CCNA_01384 0.53 +0.0
1,501,538 + CCNA_01384 0.56 -0.3
1,501,553 + CCNA_01384 0.57 -0.6
1,501,594 + CCNA_01384 0.60 +0.1
1,501,599 + CCNA_01384 0.60 -1.1

Or see this region's nucleotide sequence