Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01380

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01379 and CCNA_01380 are separated by 128 nucleotidesCCNA_01380 and CCNA_01381 are separated by 126 nucleotides CCNA_01379: CCNA_01379 - type I secretion outer membrane protein rsaFb, at 1,493,232 to 1,494,683 _01379 CCNA_01380: CCNA_01380 - pole-organizing protein popZ, at 1,494,812 to 1,495,345 _01380 CCNA_01381: CCNA_01381 - valyl-tRNA synthetase, at 1,495,472 to 1,498,192 _01381 Position (kb) 1494 1495 1496Strain fitness (log2 ratio) -1 0 1at 1493.820 kb on + strand, within CCNA_01379at 1493.825 kb on + strand, within CCNA_01379at 1494.005 kb on + strand, within CCNA_01379at 1494.066 kb on + strand, within CCNA_01379at 1494.189 kb on + strand, within CCNA_01379at 1494.234 kb on + strand, within CCNA_01379at 1494.344 kb on + strand, within CCNA_01379at 1494.344 kb on + strand, within CCNA_01379at 1494.352 kb on - strand, within CCNA_01379at 1494.408 kb on + strand, within CCNA_01379at 1494.430 kb on + strand, within CCNA_01379at 1494.430 kb on + strand, within CCNA_01379at 1494.435 kb on + strand, within CCNA_01379at 1494.438 kb on - strand, within CCNA_01379at 1494.448 kb on - strand, within CCNA_01379at 1494.461 kb on + strand, within CCNA_01379at 1494.528 kb on - strand, within CCNA_01379at 1494.699 kb on + strandat 1494.717 kb on - strandat 1494.765 kb on + strandat 1495.348 kb on + strandat 1495.410 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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1,493,820 + CCNA_01379 0.40 +0.6
1,493,825 + CCNA_01379 0.41 -0.4
1,494,005 + CCNA_01379 0.53 -0.3
1,494,066 + CCNA_01379 0.57 +1.3
1,494,189 + CCNA_01379 0.66 +1.0
1,494,234 + CCNA_01379 0.69 +0.9
1,494,344 + CCNA_01379 0.77 +0.9
1,494,344 + CCNA_01379 0.77 -1.3
1,494,352 - CCNA_01379 0.77 +1.3
1,494,408 + CCNA_01379 0.81 +0.4
1,494,430 + CCNA_01379 0.83 +0.3
1,494,430 + CCNA_01379 0.83 -0.5
1,494,435 + CCNA_01379 0.83 +0.7
1,494,438 - CCNA_01379 0.83 +0.5
1,494,448 - CCNA_01379 0.84 +0.9
1,494,461 + CCNA_01379 0.85 +0.3
1,494,528 - CCNA_01379 0.89 -0.7
1,494,699 + +1.0
1,494,717 - -1.3
1,494,765 + -0.5
1,495,348 + +0.7
1,495,410 - -0.6

Or see this region's nucleotide sequence