Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01324

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01321 and CCNA_01322 are separated by 3 nucleotidesCCNA_01322 and CCNA_01323 are separated by 10 nucleotidesCCNA_01323 and CCNA_01324 are separated by 3 nucleotidesCCNA_01324 and CCNA_01325 are separated by 172 nucleotidesCCNA_01325 and CCNA_01326 are separated by 219 nucleotides CCNA_01321: CCNA_01321 - LSU ribosomal protein L6P, at 1,438,523 to 1,439,056 _01321 CCNA_01322: CCNA_01322 - LSU ribosomal protein L18P, at 1,439,060 to 1,439,410 _01322 CCNA_01323: CCNA_01323 - SSU ribosomal protein S5P, at 1,439,421 to 1,440,026 _01323 CCNA_01324: CCNA_01324 - LSU ribosomal protein L30P, at 1,440,030 to 1,440,215 _01324 CCNA_01325: CCNA_01325 - LSU ribosomal protein L15P, at 1,440,388 to 1,440,873 _01325 CCNA_01326: CCNA_01326 - protein translocase subunit secY, at 1,441,093 to 1,442,448 _01326 Position (kb) 1440 1441Strain fitness (log2 ratio) -1 0 1at 1440.116 kb on + strand, within CCNA_01324at 1440.117 kb on + strand, within CCNA_01324at 1440.186 kb on + strand, within CCNA_01324at 1440.868 kb on + strandat 1440.868 kb on + strandat 1440.868 kb on + strandat 1440.875 kb on + strandat 1440.876 kb on - strandat 1440.883 kb on - strandat 1440.990 kb on + strandat 1441.057 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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1,440,116 + CCNA_01324 0.46 -0.9
1,440,117 + CCNA_01324 0.47 -0.6
1,440,186 + CCNA_01324 0.84 -0.1
1,440,868 + -0.5
1,440,868 + +0.6
1,440,868 + +0.6
1,440,875 + +0.8
1,440,876 - +0.7
1,440,883 - +1.1
1,440,990 + +0.0
1,441,057 - -0.9

Or see this region's nucleotide sequence