Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01275

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01274 and CCNA_01275 are separated by 108 nucleotidesCCNA_01275 and CCNA_01276 overlap by 1 nucleotidesCCNA_01276 and CCNA_01277 are separated by 16 nucleotides CCNA_01274: CCNA_01274 - piperideine-6-carboxylate dehydrogenase, at 1,400,085 to 1,401,608 _01274 CCNA_01275: CCNA_01275 - bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase, at 1,401,717 to 1,402,610 _01275 CCNA_01276: CCNA_01276 - cytochrome c5, at 1,402,610 to 1,402,969 _01276 CCNA_01277: CCNA_01277 - FAD-linked oxidoreductase, at 1,402,986 to 1,404,392 _01277 Position (kb) 1401 1402 1403Strain fitness (log2 ratio) -2 -1 0 1 2at 1400.720 kb on - strand, within CCNA_01274at 1400.722 kb on + strand, within CCNA_01274at 1400.822 kb on - strand, within CCNA_01274at 1400.856 kb on + strand, within CCNA_01274at 1400.899 kb on + strand, within CCNA_01274at 1400.899 kb on + strand, within CCNA_01274at 1400.960 kb on + strand, within CCNA_01274at 1400.965 kb on + strand, within CCNA_01274at 1400.965 kb on + strand, within CCNA_01274at 1400.984 kb on - strand, within CCNA_01274at 1401.012 kb on + strand, within CCNA_01274at 1401.012 kb on + strand, within CCNA_01274at 1401.012 kb on + strand, within CCNA_01274at 1401.020 kb on - strand, within CCNA_01274at 1401.020 kb on - strand, within CCNA_01274at 1401.020 kb on - strand, within CCNA_01274at 1401.020 kb on - strand, within CCNA_01274at 1401.062 kb on + strand, within CCNA_01274at 1401.070 kb on - strand, within CCNA_01274at 1401.070 kb on - strand, within CCNA_01274at 1401.082 kb on + strand, within CCNA_01274at 1401.090 kb on - strand, within CCNA_01274at 1401.090 kb on - strand, within CCNA_01274at 1401.106 kb on + strand, within CCNA_01274at 1401.140 kb on - strand, within CCNA_01274at 1401.175 kb on + strand, within CCNA_01274at 1401.183 kb on - strand, within CCNA_01274at 1401.200 kb on + strand, within CCNA_01274at 1401.213 kb on + strand, within CCNA_01274at 1401.237 kb on - strand, within CCNA_01274at 1401.278 kb on - strand, within CCNA_01274at 1401.290 kb on + strand, within CCNA_01274at 1401.319 kb on - strand, within CCNA_01274at 1401.351 kb on + strand, within CCNA_01274at 1401.351 kb on + strand, within CCNA_01274at 1401.442 kb on + strand, within CCNA_01274at 1401.491 kb on - strandat 1401.491 kb on - strandat 1401.491 kb on - strandat 1401.597 kb on + strandat 1401.644 kb on + strandat 1401.686 kb on + strandat 1401.725 kb on + strandat 1402.084 kb on + strand, within CCNA_01275at 1402.164 kb on - strand, within CCNA_01275at 1402.372 kb on - strand, within CCNA_01275at 1402.372 kb on - strand, within CCNA_01275at 1402.372 kb on - strand, within CCNA_01275at 1402.657 kb on - strand, within CCNA_01276at 1402.686 kb on + strand, within CCNA_01276at 1402.686 kb on + strand, within CCNA_01276at 1402.703 kb on + strand, within CCNA_01276at 1402.809 kb on + strand, within CCNA_01276at 1402.867 kb on - strand, within CCNA_01276at 1403.012 kb on - strandat 1403.115 kb on + strandat 1403.120 kb on + strandat 1403.120 kb on + strandat 1403.193 kb on - strand, within CCNA_01277at 1403.201 kb on + strand, within CCNA_01277at 1403.268 kb on + strand, within CCNA_01277at 1403.374 kb on + strand, within CCNA_01277at 1403.382 kb on - strand, within CCNA_01277at 1403.382 kb on - strand, within CCNA_01277at 1403.441 kb on + strand, within CCNA_01277at 1403.446 kb on - strand, within CCNA_01277at 1403.454 kb on - strand, within CCNA_01277at 1403.469 kb on - strand, within CCNA_01277at 1403.517 kb on - strand, within CCNA_01277at 1403.587 kb on - strand, within CCNA_01277at 1403.587 kb on - strand, within CCNA_01277at 1403.587 kb on - strand, within CCNA_01277

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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1,400,720 - CCNA_01274 0.42 -0.2
1,400,722 + CCNA_01274 0.42 -0.0
1,400,822 - CCNA_01274 0.48 +0.3
1,400,856 + CCNA_01274 0.51 -0.6
1,400,899 + CCNA_01274 0.53 -0.1
1,400,899 + CCNA_01274 0.53 -0.2
1,400,960 + CCNA_01274 0.57 -0.6
1,400,965 + CCNA_01274 0.58 -0.8
1,400,965 + CCNA_01274 0.58 +0.0
1,400,984 - CCNA_01274 0.59 -0.4
1,401,012 + CCNA_01274 0.61 -0.9
1,401,012 + CCNA_01274 0.61 -0.7
1,401,012 + CCNA_01274 0.61 +0.5
1,401,020 - CCNA_01274 0.61 -0.0
1,401,020 - CCNA_01274 0.61 +0.5
1,401,020 - CCNA_01274 0.61 +0.6
1,401,020 - CCNA_01274 0.61 +1.5
1,401,062 + CCNA_01274 0.64 -1.4
1,401,070 - CCNA_01274 0.65 +0.1
1,401,070 - CCNA_01274 0.65 -0.1
1,401,082 + CCNA_01274 0.65 -0.3
1,401,090 - CCNA_01274 0.66 +0.0
1,401,090 - CCNA_01274 0.66 -0.3
1,401,106 + CCNA_01274 0.67 +0.7
1,401,140 - CCNA_01274 0.69 +0.0
1,401,175 + CCNA_01274 0.72 +1.0
1,401,183 - CCNA_01274 0.72 -0.0
1,401,200 + CCNA_01274 0.73 -0.3
1,401,213 + CCNA_01274 0.74 -0.1
1,401,237 - CCNA_01274 0.76 -0.3
1,401,278 - CCNA_01274 0.78 -0.0
1,401,290 + CCNA_01274 0.79 +0.9
1,401,319 - CCNA_01274 0.81 +0.1
1,401,351 + CCNA_01274 0.83 -0.3
1,401,351 + CCNA_01274 0.83 -0.9
1,401,442 + CCNA_01274 0.89 -0.6
1,401,491 - +0.4
1,401,491 - +0.4
1,401,491 - +1.4
1,401,597 + +0.1
1,401,644 + -0.1
1,401,686 + -0.8
1,401,725 + +0.2
1,402,084 + CCNA_01275 0.41 -1.9
1,402,164 - CCNA_01275 0.50 +0.8
1,402,372 - CCNA_01275 0.73 -0.9
1,402,372 - CCNA_01275 0.73 +0.8
1,402,372 - CCNA_01275 0.73 +0.8
1,402,657 - CCNA_01276 0.13 +0.9
1,402,686 + CCNA_01276 0.21 +0.6
1,402,686 + CCNA_01276 0.21 +0.5
1,402,703 + CCNA_01276 0.26 +1.6
1,402,809 + CCNA_01276 0.55 +0.9
1,402,867 - CCNA_01276 0.71 -0.3
1,403,012 - +1.8
1,403,115 + +1.0
1,403,120 + +0.7
1,403,120 + +0.5
1,403,193 - CCNA_01277 0.15 -1.1
1,403,201 + CCNA_01277 0.15 +0.2
1,403,268 + CCNA_01277 0.20 +0.3
1,403,374 + CCNA_01277 0.28 +0.5
1,403,382 - CCNA_01277 0.28 -0.2
1,403,382 - CCNA_01277 0.28 -0.4
1,403,441 + CCNA_01277 0.32 +0.4
1,403,446 - CCNA_01277 0.33 -0.2
1,403,454 - CCNA_01277 0.33 -0.6
1,403,469 - CCNA_01277 0.34 +1.5
1,403,517 - CCNA_01277 0.38 +0.9
1,403,587 - CCNA_01277 0.43 -0.9
1,403,587 - CCNA_01277 0.43 -0.3
1,403,587 - CCNA_01277 0.43 +0.3

Or see this region's nucleotide sequence