Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01129 and CCNA_01130 are separated by 14 nucleotides CCNA_01130 and CCNA_01131 are separated by 9 nucleotides CCNA_01131 and CCNA_01132 are separated by 102 nucleotides
CCNA_01129: CCNA_01129 - flagellar biosynthesis protein FliQ, at 1,233,504 to 1,233,770
_01129
CCNA_01130: CCNA_01130 - flagellar biosynthesis protein FliR, at 1,233,785 to 1,234,540
_01130
CCNA_01131: CCNA_01131 - flagellar biosynthesis protein FlhB, at 1,234,550 to 1,235,635
_01131
CCNA_01132: CCNA_01132 - sensory transduction histidine kinase/receiver protein CckA, at 1,235,738 to 1,237,813
_01132
Position (kb)
1234
1235
1236 Strain fitness (log2 ratio)
-2
-1
0
1 at 1233.556 kb on + strand, within CCNA_01129 at 1233.566 kb on - strand, within CCNA_01129 at 1233.591 kb on - strand, within CCNA_01129 at 1233.617 kb on + strand, within CCNA_01129 at 1233.617 kb on + strand, within CCNA_01129 at 1233.617 kb on + strand, within CCNA_01129 at 1233.648 kb on + strand, within CCNA_01129 at 1233.773 kb on + strand at 1233.819 kb on - strand at 1233.854 kb on + strand at 1233.854 kb on + strand at 1233.861 kb on - strand, within CCNA_01130 at 1233.963 kb on + strand, within CCNA_01130 at 1233.963 kb on + strand, within CCNA_01130 at 1233.963 kb on + strand, within CCNA_01130 at 1233.963 kb on + strand, within CCNA_01130 at 1233.971 kb on - strand, within CCNA_01130 at 1233.971 kb on - strand, within CCNA_01130 at 1233.971 kb on - strand, within CCNA_01130 at 1233.971 kb on - strand, within CCNA_01130 at 1233.971 kb on - strand, within CCNA_01130 at 1233.971 kb on - strand, within CCNA_01130 at 1234.013 kb on + strand, within CCNA_01130 at 1234.021 kb on - strand, within CCNA_01130 at 1234.216 kb on + strand, within CCNA_01130 at 1234.306 kb on - strand, within CCNA_01130 at 1234.317 kb on + strand, within CCNA_01130 at 1234.385 kb on + strand, within CCNA_01130 at 1234.399 kb on + strand, within CCNA_01130 at 1234.438 kb on + strand, within CCNA_01130 at 1234.495 kb on + strand at 1234.495 kb on + strand at 1234.495 kb on + strand at 1234.495 kb on + strand at 1234.495 kb on + strand at 1234.495 kb on + strand at 1234.495 kb on + strand at 1234.495 kb on + strand at 1234.495 kb on + strand at 1234.495 kb on + strand at 1234.503 kb on - strand at 1234.503 kb on - strand at 1234.503 kb on - strand at 1234.503 kb on - strand at 1234.520 kb on + strand at 1234.520 kb on + strand at 1234.520 kb on + strand at 1234.520 kb on - strand at 1234.530 kb on + strand at 1234.536 kb on + strand at 1234.544 kb on - strand at 1234.632 kb on - strand at 1234.738 kb on - strand, within CCNA_01131 at 1234.802 kb on - strand, within CCNA_01131 at 1234.822 kb on + strand, within CCNA_01131 at 1234.831 kb on + strand, within CCNA_01131 at 1234.912 kb on + strand, within CCNA_01131 at 1234.912 kb on + strand, within CCNA_01131 at 1234.949 kb on + strand, within CCNA_01131 at 1234.949 kb on + strand, within CCNA_01131 at 1234.950 kb on - strand, within CCNA_01131 at 1235.078 kb on + strand, within CCNA_01131 at 1235.119 kb on + strand, within CCNA_01131 at 1235.119 kb on + strand, within CCNA_01131 at 1235.127 kb on - strand, within CCNA_01131 at 1235.127 kb on - strand, within CCNA_01131 at 1235.139 kb on + strand, within CCNA_01131 at 1235.228 kb on - strand, within CCNA_01131 at 1235.228 kb on - strand, within CCNA_01131 at 1235.228 kb on - strand, within CCNA_01131 at 1235.269 kb on + strand, within CCNA_01131 at 1235.269 kb on + strand, within CCNA_01131 at 1235.269 kb on + strand, within CCNA_01131 at 1235.365 kb on + strand, within CCNA_01131 at 1235.385 kb on + strand, within CCNA_01131 at 1235.486 kb on + strand, within CCNA_01131 at 1235.516 kb on + strand, within CCNA_01131 at 1235.516 kb on + strand, within CCNA_01131 at 1235.516 kb on + strand, within CCNA_01131 at 1235.524 kb on - strand, within CCNA_01131 at 1235.524 kb on - strand, within CCNA_01131 at 1235.560 kb on + strand at 1235.560 kb on + strand at 1235.586 kb on + strand at 1235.586 kb on + strand at 1235.591 kb on + strand at 1235.594 kb on - strand at 1235.594 kb on - strand at 1235.713 kb on + strand at 1235.773 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 1,233,556 + CCNA_01129 0.19 -0.5 1,233,566 - CCNA_01129 0.23 +0.8 1,233,591 - CCNA_01129 0.33 +0.5 1,233,617 + CCNA_01129 0.42 -2.0 1,233,617 + CCNA_01129 0.42 -0.7 1,233,617 + CCNA_01129 0.42 +1.1 1,233,648 + CCNA_01129 0.54 -0.5 1,233,773 + +0.1 1,233,819 - +0.8 1,233,854 + +0.3 1,233,854 + -1.4 1,233,861 - CCNA_01130 0.10 -0.0 1,233,963 + CCNA_01130 0.24 +0.2 1,233,963 + CCNA_01130 0.24 -1.5 1,233,963 + CCNA_01130 0.24 +0.8 1,233,963 + CCNA_01130 0.24 -0.4 1,233,971 - CCNA_01130 0.25 +0.5 1,233,971 - CCNA_01130 0.25 +0.8 1,233,971 - CCNA_01130 0.25 +0.8 1,233,971 - CCNA_01130 0.25 -0.9 1,233,971 - CCNA_01130 0.25 +0.2 1,233,971 - CCNA_01130 0.25 -0.0 1,234,013 + CCNA_01130 0.30 +0.8 1,234,021 - CCNA_01130 0.31 -0.8 1,234,216 + CCNA_01130 0.57 +0.8 1,234,306 - CCNA_01130 0.69 +0.2 1,234,317 + CCNA_01130 0.70 -1.7 1,234,385 + CCNA_01130 0.79 -0.4 1,234,399 + CCNA_01130 0.81 +0.1 1,234,438 + CCNA_01130 0.86 -0.6 1,234,495 + +1.0 1,234,495 + +0.0 1,234,495 + -0.0 1,234,495 + +0.6 1,234,495 + -0.4 1,234,495 + +1.2 1,234,495 + +0.7 1,234,495 + -0.3 1,234,495 + +1.0 1,234,495 + +0.2 1,234,503 - -0.1 1,234,503 - -0.1 1,234,503 - -0.8 1,234,503 - -1.1 1,234,520 + +1.5 1,234,520 + -0.5 1,234,520 + +0.2 1,234,520 - +0.2 1,234,530 + +0.4 1,234,536 + +0.2 1,234,544 - +0.5 1,234,632 - -1.5 1,234,738 - CCNA_01131 0.17 -0.2 1,234,802 - CCNA_01131 0.23 +1.5 1,234,822 + CCNA_01131 0.25 -1.6 1,234,831 + CCNA_01131 0.26 -0.5 1,234,912 + CCNA_01131 0.33 -2.0 1,234,912 + CCNA_01131 0.33 -0.9 1,234,949 + CCNA_01131 0.37 -1.4 1,234,949 + CCNA_01131 0.37 +0.5 1,234,950 - CCNA_01131 0.37 -0.4 1,235,078 + CCNA_01131 0.49 -1.0 1,235,119 + CCNA_01131 0.52 -1.1 1,235,119 + CCNA_01131 0.52 +1.2 1,235,127 - CCNA_01131 0.53 -0.4 1,235,127 - CCNA_01131 0.53 +0.2 1,235,139 + CCNA_01131 0.54 -0.1 1,235,228 - CCNA_01131 0.62 +0.2 1,235,228 - CCNA_01131 0.62 -1.1 1,235,228 - CCNA_01131 0.62 -0.9 1,235,269 + CCNA_01131 0.66 -0.5 1,235,269 + CCNA_01131 0.66 -2.1 1,235,269 + CCNA_01131 0.66 -1.0 1,235,365 + CCNA_01131 0.75 +0.4 1,235,385 + CCNA_01131 0.77 -0.5 1,235,486 + CCNA_01131 0.86 +0.8 1,235,516 + CCNA_01131 0.89 -0.6 1,235,516 + CCNA_01131 0.89 +0.8 1,235,516 + CCNA_01131 0.89 +0.3 1,235,524 - CCNA_01131 0.90 +0.8 1,235,524 - CCNA_01131 0.90 -0.5 1,235,560 + -1.0 1,235,560 + -1.4 1,235,586 + -0.1 1,235,586 + +0.4 1,235,591 + -0.0 1,235,594 - -1.1 1,235,594 - -1.1 1,235,713 + +1.2 1,235,773 - -0.4
Or see this region's nucleotide sequence