Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01060

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01059 and CCNA_01060 are separated by 242 nucleotidesCCNA_01060 and CCNA_01061 are separated by 67 nucleotides CCNA_01059: CCNA_01059 - S-layer protein rsaA, at 1,159,693 to 1,162,773 _01059 CCNA_01060: CCNA_01060 - type I protein secretion ATP-binding protein RsaD, at 1,163,016 to 1,164,752 _01060 CCNA_01061: CCNA_01061 - type I secretion adaptor protein RsaE, at 1,164,820 to 1,166,130 _01061 Position (kb) 1163 1164 1165Strain fitness (log2 ratio) -1 0 1at 1162.151 kb on + strand, within CCNA_01059at 1162.316 kb on + strand, within CCNA_01059at 1162.437 kb on + strand, within CCNA_01059at 1162.718 kb on + strandat 1162.756 kb on + strandat 1162.875 kb on + strandat 1162.878 kb on - strandat 1162.888 kb on - strandat 1162.901 kb on - strandat 1163.040 kb on - strandat 1163.074 kb on + strandat 1163.243 kb on + strand, within CCNA_01060at 1163.325 kb on + strand, within CCNA_01060at 1163.333 kb on - strand, within CCNA_01060at 1163.385 kb on - strand, within CCNA_01060at 1163.733 kb on + strand, within CCNA_01060at 1163.909 kb on - strand, within CCNA_01060at 1164.386 kb on - strand, within CCNA_01060at 1164.548 kb on + strand, within CCNA_01060at 1164.749 kb on + strandat 1164.777 kb on + strandat 1164.855 kb on + strandat 1164.863 kb on - strandat 1164.934 kb on + strandat 1164.984 kb on + strand, within CCNA_01061at 1165.035 kb on + strand, within CCNA_01061at 1165.058 kb on - strand, within CCNA_01061at 1165.140 kb on + strand, within CCNA_01061at 1165.293 kb on - strand, within CCNA_01061at 1165.326 kb on + strand, within CCNA_01061at 1165.518 kb on + strand, within CCNA_01061at 1165.518 kb on + strand, within CCNA_01061at 1165.518 kb on + strand, within CCNA_01061at 1165.557 kb on - strand, within CCNA_01061at 1165.655 kb on + strand, within CCNA_01061

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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1,162,151 + CCNA_01059 0.80 +0.9
1,162,316 + CCNA_01059 0.85 +1.2
1,162,437 + CCNA_01059 0.89 +0.1
1,162,718 + +0.4
1,162,756 + +0.4
1,162,875 + +0.6
1,162,878 - +0.7
1,162,888 - +0.6
1,162,901 - +0.6
1,163,040 - -1.5
1,163,074 + -1.2
1,163,243 + CCNA_01060 0.13 -1.0
1,163,325 + CCNA_01060 0.18 -1.0
1,163,333 - CCNA_01060 0.18 -0.4
1,163,385 - CCNA_01060 0.21 -0.9
1,163,733 + CCNA_01060 0.41 +0.5
1,163,909 - CCNA_01060 0.51 +0.2
1,164,386 - CCNA_01060 0.79 +0.8
1,164,548 + CCNA_01060 0.88 +0.6
1,164,749 + +1.2
1,164,777 + +1.1
1,164,855 + +0.4
1,164,863 - -0.3
1,164,934 + -0.7
1,164,984 + CCNA_01061 0.13 -1.7
1,165,035 + CCNA_01061 0.16 -0.9
1,165,058 - CCNA_01061 0.18 -0.4
1,165,140 + CCNA_01061 0.24 +0.8
1,165,293 - CCNA_01061 0.36 -0.6
1,165,326 + CCNA_01061 0.39 +0.8
1,165,518 + CCNA_01061 0.53 -1.1
1,165,518 + CCNA_01061 0.53 -0.6
1,165,518 + CCNA_01061 0.53 +0.2
1,165,557 - CCNA_01061 0.56 -0.0
1,165,655 + CCNA_01061 0.64 +0.2

Or see this region's nucleotide sequence