Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00954

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00952 and CCNA_00953 are separated by 15 nucleotidesCCNA_00953 and CCNA_00954 are separated by 33 nucleotidesCCNA_00954 and CCNA_00956 are separated by 267 nucleotides CCNA_00952: CCNA_00952 - flagellar assembly protein FlbE/FliH, at 1,029,681 to 1,030,319 _00952 CCNA_00953: CCNA_00953 - flagellar motor switch protein FliN, at 1,030,335 to 1,030,667 _00953 CCNA_00954: CCNA_00954 - AAA-family response regulator flbD, at 1,030,701 to 1,032,068 _00954 CCNA_00956: CCNA_00956 - flagellar biosynthesis protein FlhA, at 1,032,336 to 1,034,438 _00956 Position (kb) 1030 1031 1032 1033Strain fitness (log2 ratio) -2 -1 0 1at 1029.743 kb on + strandat 1029.743 kb on + strandat 1029.743 kb on + strandat 1029.751 kb on - strand, within CCNA_00952at 1029.832 kb on + strand, within CCNA_00952at 1029.834 kb on + strand, within CCNA_00952at 1029.834 kb on + strand, within CCNA_00952at 1029.839 kb on + strand, within CCNA_00952at 1029.847 kb on - strand, within CCNA_00952at 1029.857 kb on - strand, within CCNA_00952at 1029.889 kb on - strand, within CCNA_00952at 1029.917 kb on - strand, within CCNA_00952at 1029.990 kb on + strand, within CCNA_00952at 1030.028 kb on + strand, within CCNA_00952at 1030.029 kb on - strand, within CCNA_00952at 1030.035 kb on + strand, within CCNA_00952at 1030.036 kb on - strand, within CCNA_00952at 1030.098 kb on - strand, within CCNA_00952at 1030.250 kb on + strand, within CCNA_00952at 1030.250 kb on + strand, within CCNA_00952at 1030.292 kb on + strandat 1030.457 kb on + strand, within CCNA_00953at 1030.467 kb on + strand, within CCNA_00953at 1030.475 kb on - strand, within CCNA_00953at 1030.656 kb on + strandat 1030.661 kb on + strandat 1030.664 kb on - strandat 1030.669 kb on - strandat 1030.700 kb on - strandat 1030.855 kb on + strand, within CCNA_00954at 1030.941 kb on + strand, within CCNA_00954at 1030.963 kb on + strand, within CCNA_00954at 1030.993 kb on - strand, within CCNA_00954at 1031.075 kb on + strand, within CCNA_00954at 1031.125 kb on - strand, within CCNA_00954at 1031.130 kb on + strand, within CCNA_00954at 1031.133 kb on - strand, within CCNA_00954at 1031.216 kb on + strand, within CCNA_00954at 1031.344 kb on + strand, within CCNA_00954at 1031.406 kb on + strand, within CCNA_00954at 1031.414 kb on - strand, within CCNA_00954at 1031.445 kb on - strand, within CCNA_00954at 1031.492 kb on + strand, within CCNA_00954at 1031.492 kb on + strand, within CCNA_00954at 1031.492 kb on + strand, within CCNA_00954at 1031.548 kb on + strand, within CCNA_00954at 1031.681 kb on + strand, within CCNA_00954at 1031.757 kb on + strand, within CCNA_00954at 1032.071 kb on - strandat 1032.072 kb on - strandat 1032.113 kb on - strandat 1032.116 kb on + strandat 1032.124 kb on - strandat 1032.165 kb on + strandat 1032.167 kb on - strandat 1032.175 kb on + strandat 1032.207 kb on - strandat 1032.291 kb on + strandat 1032.308 kb on + strandat 1032.384 kb on - strandat 1032.384 kb on - strandat 1032.506 kb on + strandat 1032.609 kb on + strand, within CCNA_00956at 1032.609 kb on + strand, within CCNA_00956at 1032.609 kb on + strand, within CCNA_00956at 1032.639 kb on - strand, within CCNA_00956at 1032.811 kb on + strand, within CCNA_00956at 1032.817 kb on + strand, within CCNA_00956at 1032.884 kb on + strand, within CCNA_00956at 1032.909 kb on + strand, within CCNA_00956at 1032.917 kb on - strand, within CCNA_00956at 1032.947 kb on - strand, within CCNA_00956at 1032.962 kb on + strand, within CCNA_00956at 1033.035 kb on + strand, within CCNA_00956at 1033.038 kb on + strand, within CCNA_00956at 1033.065 kb on + strand, within CCNA_00956at 1033.065 kb on + strand, within CCNA_00956

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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1,029,743 + -0.2
1,029,743 + -1.5
1,029,743 + -1.0
1,029,751 - CCNA_00952 0.11 -0.7
1,029,832 + CCNA_00952 0.24 -0.3
1,029,834 + CCNA_00952 0.24 -0.2
1,029,834 + CCNA_00952 0.24 +0.8
1,029,839 + CCNA_00952 0.25 -0.6
1,029,847 - CCNA_00952 0.26 -0.6
1,029,857 - CCNA_00952 0.28 -0.2
1,029,889 - CCNA_00952 0.33 +1.0
1,029,917 - CCNA_00952 0.37 -0.0
1,029,990 + CCNA_00952 0.48 -0.1
1,030,028 + CCNA_00952 0.54 -1.1
1,030,029 - CCNA_00952 0.54 -2.1
1,030,035 + CCNA_00952 0.55 -1.1
1,030,036 - CCNA_00952 0.56 -0.9
1,030,098 - CCNA_00952 0.65 +0.2
1,030,250 + CCNA_00952 0.89 -2.2
1,030,250 + CCNA_00952 0.89 +0.1
1,030,292 + +0.4
1,030,457 + CCNA_00953 0.37 -2.3
1,030,467 + CCNA_00953 0.40 -0.4
1,030,475 - CCNA_00953 0.42 +0.2
1,030,656 + -0.0
1,030,661 + +0.2
1,030,664 - +0.2
1,030,669 - -1.9
1,030,700 - -1.1
1,030,855 + CCNA_00954 0.11 -0.5
1,030,941 + CCNA_00954 0.18 -1.4
1,030,963 + CCNA_00954 0.19 -0.5
1,030,993 - CCNA_00954 0.21 -1.0
1,031,075 + CCNA_00954 0.27 -0.4
1,031,125 - CCNA_00954 0.31 -0.2
1,031,130 + CCNA_00954 0.31 +1.6
1,031,133 - CCNA_00954 0.32 +0.8
1,031,216 + CCNA_00954 0.38 -0.2
1,031,344 + CCNA_00954 0.47 +0.6
1,031,406 + CCNA_00954 0.52 +0.3
1,031,414 - CCNA_00954 0.52 -0.2
1,031,445 - CCNA_00954 0.54 -0.8
1,031,492 + CCNA_00954 0.58 +1.2
1,031,492 + CCNA_00954 0.58 +0.8
1,031,492 + CCNA_00954 0.58 -0.2
1,031,548 + CCNA_00954 0.62 -0.4
1,031,681 + CCNA_00954 0.72 -1.0
1,031,757 + CCNA_00954 0.77 -0.2
1,032,071 - +0.6
1,032,072 - -0.6
1,032,113 - +0.0
1,032,116 + +1.0
1,032,124 - -0.6
1,032,165 + +0.9
1,032,167 - -0.1
1,032,175 + -0.3
1,032,207 - -0.0
1,032,291 + +0.8
1,032,308 + +0.3
1,032,384 - -1.5
1,032,384 - +1.2
1,032,506 + -1.3
1,032,609 + CCNA_00956 0.13 +0.5
1,032,609 + CCNA_00956 0.13 -0.6
1,032,609 + CCNA_00956 0.13 -1.7
1,032,639 - CCNA_00956 0.14 +0.5
1,032,811 + CCNA_00956 0.23 -0.0
1,032,817 + CCNA_00956 0.23 +0.5
1,032,884 + CCNA_00956 0.26 -0.0
1,032,909 + CCNA_00956 0.27 +0.5
1,032,917 - CCNA_00956 0.28 +0.8
1,032,947 - CCNA_00956 0.29 -1.8
1,032,962 + CCNA_00956 0.30 +1.5
1,033,035 + CCNA_00956 0.33 -0.9
1,033,038 + CCNA_00956 0.33 +0.2
1,033,065 + CCNA_00956 0.35 +0.8
1,033,065 + CCNA_00956 0.35 +0.5

Or see this region's nucleotide sequence