Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00951 and CCNA_00952 are separated by 10 nucleotides CCNA_00952 and CCNA_00953 are separated by 15 nucleotides CCNA_00953 and CCNA_00954 are separated by 33 nucleotides
CCNA_00951: CCNA_00951 - flagellar motor switch protein FliG, at 1,028,648 to 1,029,670
_00951
CCNA_00952: CCNA_00952 - flagellar assembly protein FlbE/FliH, at 1,029,681 to 1,030,319
_00952
CCNA_00953: CCNA_00953 - flagellar motor switch protein FliN, at 1,030,335 to 1,030,667
_00953
CCNA_00954: CCNA_00954 - AAA-family response regulator flbD, at 1,030,701 to 1,032,068
_00954
Position (kb)
1029
1030
1031 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1028.721 kb on + strand at 1028.743 kb on + strand at 1028.743 kb on + strand at 1028.743 kb on + strand at 1028.751 kb on - strand, within CCNA_00951 at 1028.761 kb on - strand, within CCNA_00951 at 1028.796 kb on - strand, within CCNA_00951 at 1028.798 kb on + strand, within CCNA_00951 at 1028.798 kb on + strand, within CCNA_00951 at 1028.886 kb on + strand, within CCNA_00951 at 1028.886 kb on + strand, within CCNA_00951 at 1028.936 kb on + strand, within CCNA_00951 at 1029.043 kb on + strand, within CCNA_00951 at 1029.067 kb on + strand, within CCNA_00951 at 1029.074 kb on + strand, within CCNA_00951 at 1029.149 kb on + strand, within CCNA_00951 at 1029.200 kb on - strand, within CCNA_00951 at 1029.404 kb on + strand, within CCNA_00951 at 1029.412 kb on - strand, within CCNA_00951 at 1029.448 kb on + strand, within CCNA_00951 at 1029.530 kb on + strand, within CCNA_00951 at 1029.538 kb on + strand, within CCNA_00951 at 1029.556 kb on + strand, within CCNA_00951 at 1029.575 kb on + strand at 1029.590 kb on + strand at 1029.596 kb on - strand at 1029.619 kb on + strand at 1029.623 kb on + strand at 1029.642 kb on - strand at 1029.666 kb on + strand at 1029.669 kb on - strand at 1029.672 kb on - strand at 1029.696 kb on - strand at 1029.743 kb on + strand at 1029.743 kb on + strand at 1029.743 kb on + strand at 1029.751 kb on - strand, within CCNA_00952 at 1029.832 kb on + strand, within CCNA_00952 at 1029.834 kb on + strand, within CCNA_00952 at 1029.834 kb on + strand, within CCNA_00952 at 1029.839 kb on + strand, within CCNA_00952 at 1029.847 kb on - strand, within CCNA_00952 at 1029.857 kb on - strand, within CCNA_00952 at 1029.889 kb on - strand, within CCNA_00952 at 1029.917 kb on - strand, within CCNA_00952 at 1029.990 kb on + strand, within CCNA_00952 at 1030.028 kb on + strand, within CCNA_00952 at 1030.029 kb on - strand, within CCNA_00952 at 1030.035 kb on + strand, within CCNA_00952 at 1030.036 kb on - strand, within CCNA_00952 at 1030.098 kb on - strand, within CCNA_00952 at 1030.250 kb on + strand, within CCNA_00952 at 1030.250 kb on + strand, within CCNA_00952 at 1030.292 kb on + strand at 1030.457 kb on + strand, within CCNA_00953 at 1030.467 kb on + strand, within CCNA_00953 at 1030.475 kb on - strand, within CCNA_00953 at 1030.656 kb on + strand at 1030.661 kb on + strand at 1030.664 kb on - strand at 1030.669 kb on - strand at 1030.700 kb on - strand at 1030.855 kb on + strand, within CCNA_00954 at 1030.941 kb on + strand, within CCNA_00954 at 1030.963 kb on + strand, within CCNA_00954 at 1030.993 kb on - strand, within CCNA_00954 at 1031.075 kb on + strand, within CCNA_00954 at 1031.125 kb on - strand, within CCNA_00954 at 1031.130 kb on + strand, within CCNA_00954 at 1031.133 kb on - strand, within CCNA_00954 at 1031.216 kb on + strand, within CCNA_00954
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 1,028,721 + -1.1 1,028,743 + +1.2 1,028,743 + -2.6 1,028,743 + -1.5 1,028,751 - CCNA_00951 0.10 -0.9 1,028,761 - CCNA_00951 0.11 +0.2 1,028,796 - CCNA_00951 0.14 -0.0 1,028,798 + CCNA_00951 0.15 +0.1 1,028,798 + CCNA_00951 0.15 -0.1 1,028,886 + CCNA_00951 0.23 +0.2 1,028,886 + CCNA_00951 0.23 -0.5 1,028,936 + CCNA_00951 0.28 +0.8 1,029,043 + CCNA_00951 0.39 -0.7 1,029,067 + CCNA_00951 0.41 -0.8 1,029,074 + CCNA_00951 0.42 +0.2 1,029,149 + CCNA_00951 0.49 +1.5 1,029,200 - CCNA_00951 0.54 +0.2 1,029,404 + CCNA_00951 0.74 +2.4 1,029,412 - CCNA_00951 0.75 -0.5 1,029,448 + CCNA_00951 0.78 +0.8 1,029,530 + CCNA_00951 0.86 -0.8 1,029,538 + CCNA_00951 0.87 +0.3 1,029,556 + CCNA_00951 0.89 +0.2 1,029,575 + -0.2 1,029,590 + +0.5 1,029,596 - -0.2 1,029,619 + +0.2 1,029,623 + +0.1 1,029,642 - -0.6 1,029,666 + -0.3 1,029,669 - -0.3 1,029,672 - -0.4 1,029,696 - +0.5 1,029,743 + -0.2 1,029,743 + -1.5 1,029,743 + -1.0 1,029,751 - CCNA_00952 0.11 -0.7 1,029,832 + CCNA_00952 0.24 -0.3 1,029,834 + CCNA_00952 0.24 -0.2 1,029,834 + CCNA_00952 0.24 +0.8 1,029,839 + CCNA_00952 0.25 -0.6 1,029,847 - CCNA_00952 0.26 -0.6 1,029,857 - CCNA_00952 0.28 -0.2 1,029,889 - CCNA_00952 0.33 +1.0 1,029,917 - CCNA_00952 0.37 -0.0 1,029,990 + CCNA_00952 0.48 -0.1 1,030,028 + CCNA_00952 0.54 -1.1 1,030,029 - CCNA_00952 0.54 -2.1 1,030,035 + CCNA_00952 0.55 -1.1 1,030,036 - CCNA_00952 0.56 -0.9 1,030,098 - CCNA_00952 0.65 +0.2 1,030,250 + CCNA_00952 0.89 -2.2 1,030,250 + CCNA_00952 0.89 +0.1 1,030,292 + +0.4 1,030,457 + CCNA_00953 0.37 -2.3 1,030,467 + CCNA_00953 0.40 -0.4 1,030,475 - CCNA_00953 0.42 +0.2 1,030,656 + -0.0 1,030,661 + +0.2 1,030,664 - +0.2 1,030,669 - -1.9 1,030,700 - -1.1 1,030,855 + CCNA_00954 0.11 -0.5 1,030,941 + CCNA_00954 0.18 -1.4 1,030,963 + CCNA_00954 0.19 -0.5 1,030,993 - CCNA_00954 0.21 -1.0 1,031,075 + CCNA_00954 0.27 -0.4 1,031,125 - CCNA_00954 0.31 -0.2 1,031,130 + CCNA_00954 0.31 +1.6 1,031,133 - CCNA_00954 0.32 +0.8 1,031,216 + CCNA_00954 0.38 -0.2
Or see this region's nucleotide sequence