Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00950

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00947 and CCNA_00948 are separated by 168 nucleotidesCCNA_00948 and CCNA_00949 are separated by 20 nucleotidesCCNA_00949 and CCNA_00950 are separated by 18 nucleotidesCCNA_00950 and CCNA_00951 overlap by 1 nucleotides CCNA_00947: CCNA_00947 - flagellar hook protein FlgE, at 1,024,495 to 1,026,270 _00947 CCNA_00948: CCNA_00948 - CtrA inhibitory protein SciP, at 1,026,439 to 1,026,720 _00948 CCNA_00949: CCNA_00949 - hypothetical protein, at 1,026,741 to 1,026,965 _00949 CCNA_00950: CCNA_00950 - flagellar M-ring protein FliF, at 1,026,984 to 1,028,648 _00950 CCNA_00951: CCNA_00951 - flagellar motor switch protein FliG, at 1,028,648 to 1,029,670 _00951 Position (kb) 1026 1027 1028 1029Strain fitness (log2 ratio) -2 -1 0 1 2at 1026.012 kb on - strand, within CCNA_00947at 1026.028 kb on + strand, within CCNA_00947at 1026.028 kb on + strand, within CCNA_00947at 1026.028 kb on + strand, within CCNA_00947at 1026.028 kb on + strand, within CCNA_00947at 1026.028 kb on + strand, within CCNA_00947at 1026.036 kb on - strand, within CCNA_00947at 1026.036 kb on - strand, within CCNA_00947at 1026.037 kb on + strand, within CCNA_00947at 1026.053 kb on - strand, within CCNA_00947at 1026.095 kb on - strandat 1026.100 kb on + strandat 1026.103 kb on - strandat 1026.127 kb on + strandat 1026.142 kb on + strandat 1026.156 kb on - strandat 1026.180 kb on + strandat 1026.180 kb on + strandat 1026.188 kb on - strandat 1026.195 kb on + strandat 1026.429 kb on + strandat 1026.437 kb on - strandat 1026.721 kb on + strandat 1026.864 kb on - strand, within CCNA_00949at 1026.871 kb on + strand, within CCNA_00949at 1026.894 kb on + strand, within CCNA_00949at 1026.972 kb on + strandat 1026.980 kb on - strandat 1026.991 kb on + strandat 1027.011 kb on - strandat 1027.082 kb on + strandat 1027.115 kb on + strandat 1027.149 kb on + strandat 1027.213 kb on + strand, within CCNA_00950at 1027.328 kb on + strand, within CCNA_00950at 1027.374 kb on + strand, within CCNA_00950at 1027.436 kb on + strand, within CCNA_00950at 1027.441 kb on + strand, within CCNA_00950at 1027.451 kb on + strand, within CCNA_00950at 1027.467 kb on + strand, within CCNA_00950at 1027.480 kb on - strand, within CCNA_00950at 1027.536 kb on + strand, within CCNA_00950at 1027.536 kb on + strand, within CCNA_00950at 1027.568 kb on + strand, within CCNA_00950at 1027.568 kb on + strand, within CCNA_00950at 1027.764 kb on + strand, within CCNA_00950at 1027.764 kb on + strand, within CCNA_00950at 1027.772 kb on - strand, within CCNA_00950at 1027.783 kb on + strand, within CCNA_00950at 1027.829 kb on + strand, within CCNA_00950at 1027.899 kb on + strand, within CCNA_00950at 1027.950 kb on + strand, within CCNA_00950at 1027.950 kb on + strand, within CCNA_00950at 1027.950 kb on + strand, within CCNA_00950at 1027.950 kb on + strand, within CCNA_00950at 1028.141 kb on + strand, within CCNA_00950at 1028.182 kb on + strand, within CCNA_00950at 1028.183 kb on + strand, within CCNA_00950at 1028.183 kb on + strand, within CCNA_00950at 1028.215 kb on + strand, within CCNA_00950at 1028.225 kb on + strand, within CCNA_00950at 1028.244 kb on - strand, within CCNA_00950at 1028.281 kb on + strand, within CCNA_00950at 1028.373 kb on + strand, within CCNA_00950at 1028.375 kb on + strand, within CCNA_00950at 1028.381 kb on - strand, within CCNA_00950at 1028.402 kb on - strand, within CCNA_00950at 1028.402 kb on - strand, within CCNA_00950at 1028.557 kb on - strandat 1028.721 kb on + strandat 1028.743 kb on + strandat 1028.743 kb on + strandat 1028.743 kb on + strandat 1028.751 kb on - strand, within CCNA_00951at 1028.761 kb on - strand, within CCNA_00951at 1028.796 kb on - strand, within CCNA_00951at 1028.798 kb on + strand, within CCNA_00951at 1028.798 kb on + strand, within CCNA_00951at 1028.886 kb on + strand, within CCNA_00951at 1028.886 kb on + strand, within CCNA_00951at 1028.936 kb on + strand, within CCNA_00951at 1029.043 kb on + strand, within CCNA_00951at 1029.067 kb on + strand, within CCNA_00951at 1029.074 kb on + strand, within CCNA_00951at 1029.149 kb on + strand, within CCNA_00951at 1029.200 kb on - strand, within CCNA_00951at 1029.404 kb on + strand, within CCNA_00951at 1029.412 kb on - strand, within CCNA_00951at 1029.448 kb on + strand, within CCNA_00951at 1029.530 kb on + strand, within CCNA_00951at 1029.538 kb on + strand, within CCNA_00951at 1029.556 kb on + strand, within CCNA_00951at 1029.575 kb on + strandat 1029.590 kb on + strandat 1029.596 kb on - strandat 1029.619 kb on + strandat 1029.623 kb on + strandat 1029.642 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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1,026,012 - CCNA_00947 0.85 -1.0
1,026,028 + CCNA_00947 0.86 +0.7
1,026,028 + CCNA_00947 0.86 +0.1
1,026,028 + CCNA_00947 0.86 +0.5
1,026,028 + CCNA_00947 0.86 +0.2
1,026,028 + CCNA_00947 0.86 +0.5
1,026,036 - CCNA_00947 0.87 +0.1
1,026,036 - CCNA_00947 0.87 -0.3
1,026,037 + CCNA_00947 0.87 +0.5
1,026,053 - CCNA_00947 0.88 -1.9
1,026,095 - -0.7
1,026,100 + +0.5
1,026,103 - -1.5
1,026,127 + +0.1
1,026,142 + +0.3
1,026,156 - -0.3
1,026,180 + +0.8
1,026,180 + -0.1
1,026,188 - +0.5
1,026,195 + +0.7
1,026,429 + -0.3
1,026,437 - -1.0
1,026,721 + -0.1
1,026,864 - CCNA_00949 0.55 +0.2
1,026,871 + CCNA_00949 0.58 -0.6
1,026,894 + CCNA_00949 0.68 -1.1
1,026,972 + +1.4
1,026,980 - -0.6
1,026,991 + +0.7
1,027,011 - -1.3
1,027,082 + +0.8
1,027,115 + +0.6
1,027,149 + -1.3
1,027,213 + CCNA_00950 0.14 +0.4
1,027,328 + CCNA_00950 0.21 +1.0
1,027,374 + CCNA_00950 0.23 -1.5
1,027,436 + CCNA_00950 0.27 +0.5
1,027,441 + CCNA_00950 0.27 -0.6
1,027,451 + CCNA_00950 0.28 -1.2
1,027,467 + CCNA_00950 0.29 -1.6
1,027,480 - CCNA_00950 0.30 +1.2
1,027,536 + CCNA_00950 0.33 -1.2
1,027,536 + CCNA_00950 0.33 -0.4
1,027,568 + CCNA_00950 0.35 -1.3
1,027,568 + CCNA_00950 0.35 -0.1
1,027,764 + CCNA_00950 0.47 +0.3
1,027,764 + CCNA_00950 0.47 +0.5
1,027,772 - CCNA_00950 0.47 -0.8
1,027,783 + CCNA_00950 0.48 +1.8
1,027,829 + CCNA_00950 0.51 -0.9
1,027,899 + CCNA_00950 0.55 +0.3
1,027,950 + CCNA_00950 0.58 +0.2
1,027,950 + CCNA_00950 0.58 -2.3
1,027,950 + CCNA_00950 0.58 +1.0
1,027,950 + CCNA_00950 0.58 -0.7
1,028,141 + CCNA_00950 0.69 -1.2
1,028,182 + CCNA_00950 0.72 +0.0
1,028,183 + CCNA_00950 0.72 -1.0
1,028,183 + CCNA_00950 0.72 -1.2
1,028,215 + CCNA_00950 0.74 -0.5
1,028,225 + CCNA_00950 0.75 -0.6
1,028,244 - CCNA_00950 0.76 +0.8
1,028,281 + CCNA_00950 0.78 -1.0
1,028,373 + CCNA_00950 0.83 -0.6
1,028,375 + CCNA_00950 0.84 +1.0
1,028,381 - CCNA_00950 0.84 +0.2
1,028,402 - CCNA_00950 0.85 +0.2
1,028,402 - CCNA_00950 0.85 -0.8
1,028,557 - +0.5
1,028,721 + -1.1
1,028,743 + +1.2
1,028,743 + -2.6
1,028,743 + -1.5
1,028,751 - CCNA_00951 0.10 -0.9
1,028,761 - CCNA_00951 0.11 +0.2
1,028,796 - CCNA_00951 0.14 -0.0
1,028,798 + CCNA_00951 0.15 +0.1
1,028,798 + CCNA_00951 0.15 -0.1
1,028,886 + CCNA_00951 0.23 +0.2
1,028,886 + CCNA_00951 0.23 -0.5
1,028,936 + CCNA_00951 0.28 +0.8
1,029,043 + CCNA_00951 0.39 -0.7
1,029,067 + CCNA_00951 0.41 -0.8
1,029,074 + CCNA_00951 0.42 +0.2
1,029,149 + CCNA_00951 0.49 +1.5
1,029,200 - CCNA_00951 0.54 +0.2
1,029,404 + CCNA_00951 0.74 +2.4
1,029,412 - CCNA_00951 0.75 -0.5
1,029,448 + CCNA_00951 0.78 +0.8
1,029,530 + CCNA_00951 0.86 -0.8
1,029,538 + CCNA_00951 0.87 +0.3
1,029,556 + CCNA_00951 0.89 +0.2
1,029,575 + -0.2
1,029,590 + +0.5
1,029,596 - -0.2
1,029,619 + +0.2
1,029,623 + +0.1
1,029,642 - -0.6

Or see this region's nucleotide sequence