Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00921 and CCNA_00922 are separated by 98 nucleotides CCNA_00922 and CCNA_00923 are separated by 219 nucleotides CCNA_00923 and CCNA_00924 are separated by 9 nucleotides CCNA_00924 and CCNA_00925 are separated by 0 nucleotides
CCNA_00921: CCNA_00921 - zinc metalloprotease, at 997,744 to 998,499
_00921
CCNA_00922: CCNA_00922 - ClpB protein, at 998,598 to 1,001,177
_00922
CCNA_00923: CCNA_00923 - hypothetical protein, at 1,001,397 to 1,001,729
_00923
CCNA_00924: CCNA_00924 - MarR/EmrR family transcriptional regulator, at 1,001,739 to 1,002,017
_00924
CCNA_00925: CCNA_00925 - hypothetical protein, at 1,002,018 to 1,002,560
_00925
Position (kb) 998
999
1000
1001
1002 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 997.659 kb on - strand at 997.701 kb on + strand at 997.740 kb on + strand at 997.740 kb on + strand at 997.748 kb on - strand at 997.748 kb on - strand at 997.749 kb on - strand at 997.764 kb on + strand at 997.785 kb on + strand at 997.795 kb on + strand at 997.795 kb on - strand at 997.808 kb on + strand at 997.821 kb on + strand, within CCNA_00921 at 997.834 kb on - strand, within CCNA_00921 at 997.844 kb on - strand, within CCNA_00921 at 997.844 kb on - strand, within CCNA_00921 at 997.845 kb on - strand, within CCNA_00921 at 997.876 kb on + strand, within CCNA_00921 at 997.881 kb on + strand, within CCNA_00921 at 997.881 kb on + strand, within CCNA_00921 at 997.889 kb on - strand, within CCNA_00921 at 997.890 kb on - strand, within CCNA_00921 at 997.895 kb on - strand, within CCNA_00921 at 997.926 kb on + strand, within CCNA_00921 at 997.941 kb on + strand, within CCNA_00921 at 997.955 kb on - strand, within CCNA_00921 at 998.060 kb on + strand, within CCNA_00921 at 998.064 kb on - strand, within CCNA_00921 at 998.137 kb on + strand, within CCNA_00921 at 998.140 kb on - strand, within CCNA_00921 at 998.140 kb on - strand, within CCNA_00921 at 998.188 kb on + strand, within CCNA_00921 at 998.305 kb on + strand, within CCNA_00921 at 998.396 kb on + strand, within CCNA_00921 at 998.437 kb on - strand at 998.442 kb on + strand at 998.442 kb on - strand at 998.450 kb on - strand at 998.495 kb on + strand at 998.545 kb on - strand at 998.556 kb on + strand at 998.556 kb on + strand at 998.564 kb on - strand at 998.564 kb on - strand at 998.612 kb on + strand at 998.612 kb on + strand at 998.614 kb on + strand at 998.646 kb on + strand at 998.646 kb on + strand at 998.654 kb on - strand at 998.654 kb on - strand at 998.654 kb on - strand at 998.654 kb on - strand at 998.654 kb on - strand at 998.654 kb on - strand at 998.654 kb on - strand at 998.654 kb on - strand at 998.654 kb on - strand at 998.654 kb on - strand at 998.665 kb on + strand at 998.681 kb on - strand at 998.714 kb on - strand at 998.782 kb on - strand at 998.796 kb on + strand at 998.801 kb on + strand at 998.801 kb on + strand at 998.801 kb on + strand at 998.809 kb on - strand at 998.809 kb on - strand at 998.837 kb on + strand at 998.857 kb on - strand, within CCNA_00922 at 998.859 kb on + strand, within CCNA_00922 at 998.870 kb on + strand, within CCNA_00922 at 999.002 kb on - strand, within CCNA_00922 at 999.074 kb on - strand, within CCNA_00922 at 999.168 kb on + strand, within CCNA_00922 at 999.194 kb on + strand, within CCNA_00922 at 999.202 kb on - strand, within CCNA_00922 at 999.255 kb on + strand, within CCNA_00922 at 999.304 kb on - strand, within CCNA_00922 at 999.318 kb on + strand, within CCNA_00922 at 999.366 kb on - strand, within CCNA_00922 at 999.371 kb on + strand, within CCNA_00922 at 999.371 kb on + strand, within CCNA_00922 at 999.371 kb on + strand, within CCNA_00922 at 999.371 kb on + strand, within CCNA_00922 at 999.419 kb on + strand, within CCNA_00922 at 999.442 kb on + strand, within CCNA_00922 at 999.454 kb on - strand, within CCNA_00922 at 999.481 kb on + strand, within CCNA_00922 at 999.481 kb on + strand, within CCNA_00922 at 999.489 kb on - strand, within CCNA_00922 at 999.491 kb on + strand, within CCNA_00922 at 999.499 kb on - strand, within CCNA_00922 at 999.516 kb on + strand, within CCNA_00922 at 999.526 kb on + strand, within CCNA_00922 at 999.535 kb on + strand, within CCNA_00922 at 999.579 kb on + strand, within CCNA_00922 at 999.603 kb on + strand, within CCNA_00922 at 999.632 kb on - strand, within CCNA_00922 at 999.645 kb on - strand, within CCNA_00922 at 999.652 kb on + strand, within CCNA_00922 at 999.652 kb on + strand, within CCNA_00922 at 999.660 kb on - strand, within CCNA_00922 at 999.660 kb on - strand, within CCNA_00922 at 999.660 kb on - strand, within CCNA_00922 at 999.660 kb on - strand, within CCNA_00922 at 999.673 kb on - strand, within CCNA_00922 at 999.676 kb on + strand, within CCNA_00922 at 999.684 kb on - strand, within CCNA_00922 at 999.720 kb on + strand, within CCNA_00922 at 999.788 kb on + strand, within CCNA_00922 at 999.828 kb on + strand, within CCNA_00922 at 999.860 kb on + strand, within CCNA_00922 at 999.860 kb on + strand, within CCNA_00922 at 999.868 kb on - strand, within CCNA_00922 at 999.903 kb on + strand, within CCNA_00922 at 999.904 kb on + strand, within CCNA_00922 at 999.925 kb on + strand, within CCNA_00922 at 999.926 kb on + strand, within CCNA_00922 at 999.934 kb on - strand, within CCNA_00922 at 999.948 kb on + strand, within CCNA_00922 at 999.963 kb on + strand, within CCNA_00922 at 999.969 kb on - strand, within CCNA_00922 at 1000.022 kb on - strand, within CCNA_00922 at 1000.063 kb on - strand, within CCNA_00922 at 1000.119 kb on + strand, within CCNA_00922 at 1000.172 kb on - strand, within CCNA_00922 at 1000.196 kb on + strand, within CCNA_00922 at 1000.268 kb on + strand, within CCNA_00922 at 1000.268 kb on + strand, within CCNA_00922 at 1000.274 kb on - strand, within CCNA_00922 at 1000.276 kb on - strand, within CCNA_00922 at 1000.294 kb on + strand, within CCNA_00922 at 1000.314 kb on - strand, within CCNA_00922 at 1000.367 kb on - strand, within CCNA_00922 at 1000.367 kb on - strand, within CCNA_00922 at 1000.367 kb on - strand, within CCNA_00922 at 1000.367 kb on - strand, within CCNA_00922 at 1000.380 kb on - strand, within CCNA_00922 at 1000.418 kb on + strand, within CCNA_00922 at 1000.418 kb on + strand, within CCNA_00922 at 1000.426 kb on - strand, within CCNA_00922 at 1000.431 kb on - strand, within CCNA_00922 at 1000.511 kb on + strand, within CCNA_00922 at 1000.539 kb on + strand, within CCNA_00922 at 1000.547 kb on - strand, within CCNA_00922 at 1000.547 kb on - strand, within CCNA_00922 at 1000.547 kb on - strand, within CCNA_00922 at 1000.555 kb on + strand, within CCNA_00922 at 1000.572 kb on + strand, within CCNA_00922 at 1000.580 kb on - strand, within CCNA_00922 at 1000.591 kb on + strand, within CCNA_00922 at 1000.624 kb on - strand, within CCNA_00922 at 1000.633 kb on - strand, within CCNA_00922 at 1000.639 kb on + strand, within CCNA_00922 at 1000.695 kb on + strand, within CCNA_00922 at 1000.703 kb on - strand, within CCNA_00922 at 1000.790 kb on + strand, within CCNA_00922 at 1000.798 kb on - strand, within CCNA_00922 at 1000.814 kb on + strand, within CCNA_00922 at 1000.820 kb on - strand, within CCNA_00922 at 1000.858 kb on - strand, within CCNA_00922 at 1000.877 kb on + strand, within CCNA_00922 at 1000.877 kb on + strand, within CCNA_00922 at 1000.885 kb on - strand, within CCNA_00922 at 1000.914 kb on + strand, within CCNA_00922 at 1000.965 kb on + strand at 1000.965 kb on + strand at 1000.986 kb on + strand at 1000.986 kb on + strand at 1000.994 kb on - strand at 1001.029 kb on - strand at 1001.037 kb on + strand at 1001.045 kb on - strand at 1001.055 kb on - strand at 1001.060 kb on + strand at 1001.069 kb on - strand at 1001.085 kb on + strand at 1001.088 kb on - strand at 1001.151 kb on - strand at 1001.183 kb on - strand at 1001.190 kb on - strand at 1001.203 kb on + strand at 1001.216 kb on - strand at 1001.243 kb on + strand at 1001.243 kb on + strand at 1001.243 kb on - strand at 1001.251 kb on - strand at 1001.251 kb on - strand at 1001.270 kb on + strand at 1001.298 kb on - strand at 1001.305 kb on + strand at 1001.306 kb on + strand at 1001.372 kb on + strand at 1001.395 kb on - strand at 1001.399 kb on + strand at 1001.400 kb on + strand at 1001.400 kb on + strand at 1001.408 kb on - strand at 1001.463 kb on + strand, within CCNA_00923 at 1001.488 kb on + strand, within CCNA_00923 at 1001.488 kb on + strand, within CCNA_00923 at 1001.531 kb on + strand, within CCNA_00923 at 1001.531 kb on + strand, within CCNA_00923 at 1001.531 kb on + strand, within CCNA_00923 at 1001.531 kb on + strand, within CCNA_00923 at 1001.539 kb on - strand, within CCNA_00923 at 1001.539 kb on - strand, within CCNA_00923 at 1001.544 kb on - strand, within CCNA_00923 at 1001.548 kb on + strand, within CCNA_00923 at 1001.561 kb on - strand, within CCNA_00923 at 1001.588 kb on + strand, within CCNA_00923 at 1001.726 kb on + strand at 1001.745 kb on - strand at 1001.745 kb on - strand at 1001.756 kb on - strand at 1001.764 kb on - strand at 1001.837 kb on - strand, within CCNA_00924 at 1001.849 kb on - strand, within CCNA_00924 at 1001.885 kb on - strand, within CCNA_00924 at 1001.885 kb on - strand, within CCNA_00924 at 1001.977 kb on - strand, within CCNA_00924 at 1001.982 kb on - strand, within CCNA_00924 at 1002.051 kb on - strand at 1002.085 kb on - strand, within CCNA_00925 at 1002.085 kb on - strand, within CCNA_00925 at 1002.085 kb on - strand, within CCNA_00925 at 1002.090 kb on - strand, within CCNA_00925 at 1002.092 kb on - strand, within CCNA_00925 at 1002.092 kb on - strand, within CCNA_00925 at 1002.124 kb on + strand, within CCNA_00925 at 1002.140 kb on + strand, within CCNA_00925 at 1002.148 kb on - strand, within CCNA_00925 at 1002.148 kb on - strand, within CCNA_00925
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 997,659 - -0.4 997,701 + +0.7 997,740 + +0.7 997,740 + +1.1 997,748 - -1.7 997,748 - -0.7 997,749 - +0.2 997,764 + +0.7 997,785 + +0.0 997,795 + -0.2 997,795 - -3.2 997,808 + -1.3 997,821 + CCNA_00921 0.10 +0.4 997,834 - CCNA_00921 0.12 +0.2 997,844 - CCNA_00921 0.13 +1.3 997,844 - CCNA_00921 0.13 -0.3 997,845 - CCNA_00921 0.13 +0.3 997,876 + CCNA_00921 0.17 -0.4 997,881 + CCNA_00921 0.18 +0.8 997,881 + CCNA_00921 0.18 +0.7 997,889 - CCNA_00921 0.19 +0.1 997,890 - CCNA_00921 0.19 +0.4 997,895 - CCNA_00921 0.20 +0.2 997,926 + CCNA_00921 0.24 +0.2 997,941 + CCNA_00921 0.26 -0.8 997,955 - CCNA_00921 0.28 -0.5 998,060 + CCNA_00921 0.42 +0.6 998,064 - CCNA_00921 0.42 +0.9 998,137 + CCNA_00921 0.52 -0.0 998,140 - CCNA_00921 0.52 -2.2 998,140 - CCNA_00921 0.52 +1.0 998,188 + CCNA_00921 0.59 -0.2 998,305 + CCNA_00921 0.74 +0.7 998,396 + CCNA_00921 0.86 -0.2 998,437 - -0.6 998,442 + -0.0 998,442 - -0.9 998,450 - -0.0 998,495 + +0.4 998,545 - -1.3 998,556 + +0.8 998,556 + -0.1 998,564 - -1.4 998,564 - -1.1 998,612 + +0.3 998,612 + +0.1 998,614 + +0.5 998,646 + +0.4 998,646 + +0.6 998,654 - -0.0 998,654 - -0.4 998,654 - -1.6 998,654 - +0.0 998,654 - -0.0 998,654 - +0.6 998,654 - -0.1 998,654 - +0.5 998,654 - +0.5 998,654 - +1.2 998,665 + +0.2 998,681 - +0.1 998,714 - -2.4 998,782 - +0.6 998,796 + +0.0 998,801 + +0.8 998,801 + +0.7 998,801 + +0.4 998,809 - -1.7 998,809 - -0.6 998,837 + +0.3 998,857 - CCNA_00922 0.10 -0.2 998,859 + CCNA_00922 0.10 +0.5 998,870 + CCNA_00922 0.11 -0.0 999,002 - CCNA_00922 0.16 +1.1 999,074 - CCNA_00922 0.18 -0.4 999,168 + CCNA_00922 0.22 -0.1 999,194 + CCNA_00922 0.23 +0.7 999,202 - CCNA_00922 0.23 -0.1 999,255 + CCNA_00922 0.25 +0.2 999,304 - CCNA_00922 0.27 -0.0 999,318 + CCNA_00922 0.28 +0.2 999,366 - CCNA_00922 0.30 +1.7 999,371 + CCNA_00922 0.30 +0.5 999,371 + CCNA_00922 0.30 -0.1 999,371 + CCNA_00922 0.30 +0.5 999,371 + CCNA_00922 0.30 +1.8 999,419 + CCNA_00922 0.32 -0.0 999,442 + CCNA_00922 0.33 +0.3 999,454 - CCNA_00922 0.33 +0.4 999,481 + CCNA_00922 0.34 +0.4 999,481 + CCNA_00922 0.34 +0.8 999,489 - CCNA_00922 0.35 +0.8 999,491 + CCNA_00922 0.35 +1.3 999,499 - CCNA_00922 0.35 -0.4 999,516 + CCNA_00922 0.36 +0.2 999,526 + CCNA_00922 0.36 +0.7 999,535 + CCNA_00922 0.36 -0.9 999,579 + CCNA_00922 0.38 +0.3 999,603 + CCNA_00922 0.39 +0.5 999,632 - CCNA_00922 0.40 +0.9 999,645 - CCNA_00922 0.41 -0.4 999,652 + CCNA_00922 0.41 +1.0 999,652 + CCNA_00922 0.41 +0.5 999,660 - CCNA_00922 0.41 -0.4 999,660 - CCNA_00922 0.41 +0.1 999,660 - CCNA_00922 0.41 -0.1 999,660 - CCNA_00922 0.41 +0.5 999,673 - CCNA_00922 0.42 -0.9 999,676 + CCNA_00922 0.42 +1.3 999,684 - CCNA_00922 0.42 -2.9 999,720 + CCNA_00922 0.43 -0.2 999,788 + CCNA_00922 0.46 +0.3 999,828 + CCNA_00922 0.48 -0.4 999,860 + CCNA_00922 0.49 -0.3 999,860 + CCNA_00922 0.49 +0.2 999,868 - CCNA_00922 0.49 +1.4 999,903 + CCNA_00922 0.51 +0.1 999,904 + CCNA_00922 0.51 -0.5 999,925 + CCNA_00922 0.51 +0.1 999,926 + CCNA_00922 0.51 +0.2 999,934 - CCNA_00922 0.52 -1.0 999,948 + CCNA_00922 0.52 +0.0 999,963 + CCNA_00922 0.53 +0.5 999,969 - CCNA_00922 0.53 +2.2 1,000,022 - CCNA_00922 0.55 -1.0 1,000,063 - CCNA_00922 0.57 -0.1 1,000,119 + CCNA_00922 0.59 -0.1 1,000,172 - CCNA_00922 0.61 -0.1 1,000,196 + CCNA_00922 0.62 +0.2 1,000,268 + CCNA_00922 0.65 +0.2 1,000,268 + CCNA_00922 0.65 +0.6 1,000,274 - CCNA_00922 0.65 +0.1 1,000,276 - CCNA_00922 0.65 -1.2 1,000,294 + CCNA_00922 0.66 +0.4 1,000,314 - CCNA_00922 0.67 +0.0 1,000,367 - CCNA_00922 0.69 -2.5 1,000,367 - CCNA_00922 0.69 +1.1 1,000,367 - CCNA_00922 0.69 +0.1 1,000,367 - CCNA_00922 0.69 -1.2 1,000,380 - CCNA_00922 0.69 -0.1 1,000,418 + CCNA_00922 0.71 +1.0 1,000,418 + CCNA_00922 0.71 +0.0 1,000,426 - CCNA_00922 0.71 -1.2 1,000,431 - CCNA_00922 0.71 -0.2 1,000,511 + CCNA_00922 0.74 +0.2 1,000,539 + CCNA_00922 0.75 +0.6 1,000,547 - CCNA_00922 0.76 +0.3 1,000,547 - CCNA_00922 0.76 +0.4 1,000,547 - CCNA_00922 0.76 -0.4 1,000,555 + CCNA_00922 0.76 +0.2 1,000,572 + CCNA_00922 0.77 -1.6 1,000,580 - CCNA_00922 0.77 -2.0 1,000,591 + CCNA_00922 0.77 -0.0 1,000,624 - CCNA_00922 0.79 -0.2 1,000,633 - CCNA_00922 0.79 +1.8 1,000,639 + CCNA_00922 0.79 +0.1 1,000,695 + CCNA_00922 0.81 +0.4 1,000,703 - CCNA_00922 0.82 -1.0 1,000,790 + CCNA_00922 0.85 +0.4 1,000,798 - CCNA_00922 0.85 -0.3 1,000,814 + CCNA_00922 0.86 -2.5 1,000,820 - CCNA_00922 0.86 -0.0 1,000,858 - CCNA_00922 0.88 +0.5 1,000,877 + CCNA_00922 0.88 +0.2 1,000,877 + CCNA_00922 0.88 +0.2 1,000,885 - CCNA_00922 0.89 +0.2 1,000,914 + CCNA_00922 0.90 +0.2 1,000,965 + -0.0 1,000,965 + +1.3 1,000,986 + +0.5 1,000,986 + +0.5 1,000,994 - -0.1 1,001,029 - -0.5 1,001,037 + +1.2 1,001,045 - +0.2 1,001,055 - -0.8 1,001,060 + -0.1 1,001,069 - -0.1 1,001,085 + +0.5 1,001,088 - -0.5 1,001,151 - -0.7 1,001,183 - -0.3 1,001,190 - +0.7 1,001,203 + -0.2 1,001,216 - +0.3 1,001,243 + +0.0 1,001,243 + +0.1 1,001,243 - +0.9 1,001,251 - -0.2 1,001,251 - +0.4 1,001,270 + +0.2 1,001,298 - -0.3 1,001,305 + +0.9 1,001,306 + -2.0 1,001,372 + +0.8 1,001,395 - -1.3 1,001,399 + +0.1 1,001,400 + +0.3 1,001,400 + -0.6 1,001,408 - -1.0 1,001,463 + CCNA_00923 0.20 -0.1 1,001,488 + CCNA_00923 0.27 -0.5 1,001,488 + CCNA_00923 0.27 -0.4 1,001,531 + CCNA_00923 0.40 +0.4 1,001,531 + CCNA_00923 0.40 -0.1 1,001,531 + CCNA_00923 0.40 +1.8 1,001,531 + CCNA_00923 0.40 +0.2 1,001,539 - CCNA_00923 0.43 +0.3 1,001,539 - CCNA_00923 0.43 -0.6 1,001,544 - CCNA_00923 0.44 -0.2 1,001,548 + CCNA_00923 0.45 -0.3 1,001,561 - CCNA_00923 0.49 -0.4 1,001,588 + CCNA_00923 0.57 -0.6 1,001,726 + -0.3 1,001,745 - -0.1 1,001,745 - +0.8 1,001,756 - -1.1 1,001,764 - +0.8 1,001,837 - CCNA_00924 0.35 +1.7 1,001,849 - CCNA_00924 0.39 +0.8 1,001,885 - CCNA_00924 0.52 +0.0 1,001,885 - CCNA_00924 0.52 +0.4 1,001,977 - CCNA_00924 0.85 +0.2 1,001,982 - CCNA_00924 0.87 +0.7 1,002,051 - +0.0 1,002,085 - CCNA_00925 0.12 +0.2 1,002,085 - CCNA_00925 0.12 +0.3 1,002,085 - CCNA_00925 0.12 +0.7 1,002,090 - CCNA_00925 0.13 -0.2 1,002,092 - CCNA_00925 0.14 -0.5 1,002,092 - CCNA_00925 0.14 -0.1 1,002,124 + CCNA_00925 0.20 -1.4 1,002,140 + CCNA_00925 0.22 +1.4 1,002,148 - CCNA_00925 0.24 +0.8 1,002,148 - CCNA_00925 0.24 +1.1
Or see this region's nucleotide sequence