Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00860

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00859 and CCNA_00860 are separated by 55 nucleotidesCCNA_00860 and CCNA_00861 are separated by 123 nucleotidesCCNA_00861 and CCNA_00862 are separated by 138 nucleotides CCNA_00859: CCNA_00859 - acetyltransferase, GNAT family, at 937,676 to 938,563 _00859 CCNA_00860: CCNA_00860 - holdfast inhibitor protein HfiA, at 938,619 to 938,855 _00860 CCNA_00861: CCNA_00861 - hypothetical protein, at 938,979 to 939,557 _00861 CCNA_00862: CCNA_00862 - xylonate dehydratase xylD, at 939,696 to 941,471 _00862 Position (kb) 938 939Strain fitness (log2 ratio) -2 -1 0 1at 937.634 kb on - strandat 937.700 kb on + strandat 937.700 kb on + strandat 937.700 kb on + strandat 937.708 kb on - strandat 937.786 kb on - strand, within CCNA_00859at 937.808 kb on - strand, within CCNA_00859at 937.820 kb on + strand, within CCNA_00859at 937.924 kb on + strand, within CCNA_00859at 937.935 kb on + strand, within CCNA_00859at 937.945 kb on + strand, within CCNA_00859at 937.969 kb on + strand, within CCNA_00859at 937.977 kb on - strand, within CCNA_00859at 938.030 kb on + strand, within CCNA_00859at 938.045 kb on + strand, within CCNA_00859at 938.045 kb on + strand, within CCNA_00859at 938.047 kb on + strand, within CCNA_00859at 938.047 kb on + strand, within CCNA_00859at 938.055 kb on - strand, within CCNA_00859at 938.143 kb on - strand, within CCNA_00859at 938.187 kb on + strand, within CCNA_00859at 938.195 kb on - strand, within CCNA_00859at 938.205 kb on - strand, within CCNA_00859at 938.254 kb on - strand, within CCNA_00859at 938.264 kb on + strand, within CCNA_00859at 938.264 kb on + strand, within CCNA_00859at 938.272 kb on - strand, within CCNA_00859at 938.272 kb on - strand, within CCNA_00859at 938.286 kb on - strand, within CCNA_00859at 938.301 kb on + strand, within CCNA_00859at 938.340 kb on + strand, within CCNA_00859at 938.345 kb on - strand, within CCNA_00859at 938.355 kb on - strand, within CCNA_00859at 938.357 kb on - strand, within CCNA_00859at 938.408 kb on + strand, within CCNA_00859at 938.410 kb on - strand, within CCNA_00859at 938.410 kb on - strand, within CCNA_00859at 938.420 kb on + strand, within CCNA_00859at 938.420 kb on + strand, within CCNA_00859at 938.425 kb on + strand, within CCNA_00859at 938.427 kb on + strand, within CCNA_00859at 938.440 kb on - strand, within CCNA_00859at 938.447 kb on - strand, within CCNA_00859at 938.476 kb on + strandat 938.478 kb on + strandat 938.508 kb on - strandat 938.524 kb on + strandat 938.532 kb on - strandat 938.561 kb on + strandat 938.579 kb on - strandat 938.589 kb on - strandat 938.615 kb on + strandat 938.618 kb on - strandat 938.732 kb on + strand, within CCNA_00860at 938.749 kb on + strand, within CCNA_00860at 938.771 kb on + strand, within CCNA_00860at 938.771 kb on + strand, within CCNA_00860at 938.818 kb on + strand, within CCNA_00860at 938.827 kb on - strand, within CCNA_00860at 938.838 kb on + strandat 938.993 kb on - strandat 939.014 kb on - strandat 939.051 kb on + strand, within CCNA_00861at 939.059 kb on - strand, within CCNA_00861at 939.070 kb on + strand, within CCNA_00861at 939.075 kb on + strand, within CCNA_00861at 939.075 kb on + strand, within CCNA_00861at 939.075 kb on + strand, within CCNA_00861at 939.083 kb on - strand, within CCNA_00861at 939.108 kb on - strand, within CCNA_00861at 939.110 kb on + strand, within CCNA_00861at 939.118 kb on - strand, within CCNA_00861at 939.124 kb on + strand, within CCNA_00861at 939.124 kb on + strand, within CCNA_00861at 939.132 kb on - strand, within CCNA_00861at 939.204 kb on + strand, within CCNA_00861at 939.212 kb on - strand, within CCNA_00861at 939.240 kb on + strand, within CCNA_00861at 939.240 kb on + strand, within CCNA_00861at 939.248 kb on - strand, within CCNA_00861at 939.248 kb on - strand, within CCNA_00861at 939.263 kb on + strand, within CCNA_00861at 939.263 kb on + strand, within CCNA_00861at 939.318 kb on - strand, within CCNA_00861at 939.437 kb on + strand, within CCNA_00861at 939.483 kb on + strand, within CCNA_00861at 939.488 kb on + strand, within CCNA_00861at 939.496 kb on - strand, within CCNA_00861at 939.496 kb on - strand, within CCNA_00861at 939.507 kb on - strandat 939.633 kb on + strandat 939.670 kb on + strandat 939.678 kb on + strandat 939.709 kb on - strandat 939.750 kb on + strandat 939.750 kb on + strandat 939.758 kb on - strandat 939.758 kb on - strandat 939.758 kb on - strandat 939.798 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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937,634 - +0.0
937,700 + -0.6
937,700 + -0.6
937,700 + +0.1
937,708 - +0.5
937,786 - CCNA_00859 0.12 -0.1
937,808 - CCNA_00859 0.15 +0.6
937,820 + CCNA_00859 0.16 -0.9
937,924 + CCNA_00859 0.28 -1.2
937,935 + CCNA_00859 0.29 +0.3
937,945 + CCNA_00859 0.30 -2.0
937,969 + CCNA_00859 0.33 +0.6
937,977 - CCNA_00859 0.34 +1.0
938,030 + CCNA_00859 0.40 -0.1
938,045 + CCNA_00859 0.42 -1.0
938,045 + CCNA_00859 0.42 -0.2
938,047 + CCNA_00859 0.42 -0.5
938,047 + CCNA_00859 0.42 +0.1
938,055 - CCNA_00859 0.43 -0.2
938,143 - CCNA_00859 0.53 +0.5
938,187 + CCNA_00859 0.58 -1.3
938,195 - CCNA_00859 0.58 -0.8
938,205 - CCNA_00859 0.60 -0.1
938,254 - CCNA_00859 0.65 +0.2
938,264 + CCNA_00859 0.66 -0.5
938,264 + CCNA_00859 0.66 +0.2
938,272 - CCNA_00859 0.67 +0.3
938,272 - CCNA_00859 0.67 +0.3
938,286 - CCNA_00859 0.69 +0.2
938,301 + CCNA_00859 0.70 +0.2
938,340 + CCNA_00859 0.75 -0.4
938,345 - CCNA_00859 0.75 -0.8
938,355 - CCNA_00859 0.76 -0.3
938,357 - CCNA_00859 0.77 +1.1
938,408 + CCNA_00859 0.82 +0.2
938,410 - CCNA_00859 0.83 +0.8
938,410 - CCNA_00859 0.83 -0.0
938,420 + CCNA_00859 0.84 -0.5
938,420 + CCNA_00859 0.84 +0.2
938,425 + CCNA_00859 0.84 +0.8
938,427 + CCNA_00859 0.85 -0.2
938,440 - CCNA_00859 0.86 +1.0
938,447 - CCNA_00859 0.87 +0.3
938,476 + +0.6
938,478 + +0.3
938,508 - -0.5
938,524 + -1.2
938,532 - -0.1
938,561 + +0.6
938,579 - +0.5
938,589 - +0.8
938,615 + -0.5
938,618 - +0.7
938,732 + CCNA_00860 0.48 -1.3
938,749 + CCNA_00860 0.55 +0.1
938,771 + CCNA_00860 0.64 -0.5
938,771 + CCNA_00860 0.64 -1.9
938,818 + CCNA_00860 0.84 -1.2
938,827 - CCNA_00860 0.88 -0.7
938,838 + -0.1
938,993 - +0.2
939,014 - -0.2
939,051 + CCNA_00861 0.12 +0.5
939,059 - CCNA_00861 0.14 -0.1
939,070 + CCNA_00861 0.16 -0.3
939,075 + CCNA_00861 0.17 -0.4
939,075 + CCNA_00861 0.17 +0.4
939,075 + CCNA_00861 0.17 +0.2
939,083 - CCNA_00861 0.18 +0.5
939,108 - CCNA_00861 0.22 -0.3
939,110 + CCNA_00861 0.23 +0.4
939,118 - CCNA_00861 0.24 +0.4
939,124 + CCNA_00861 0.25 -0.2
939,124 + CCNA_00861 0.25 +0.3
939,132 - CCNA_00861 0.26 +0.5
939,204 + CCNA_00861 0.39 +0.1
939,212 - CCNA_00861 0.40 +1.1
939,240 + CCNA_00861 0.45 -0.7
939,240 + CCNA_00861 0.45 +0.1
939,248 - CCNA_00861 0.46 +0.7
939,248 - CCNA_00861 0.46 +0.0
939,263 + CCNA_00861 0.49 +0.2
939,263 + CCNA_00861 0.49 -0.4
939,318 - CCNA_00861 0.59 +1.0
939,437 + CCNA_00861 0.79 -0.3
939,483 + CCNA_00861 0.87 -2.3
939,488 + CCNA_00861 0.88 -0.9
939,496 - CCNA_00861 0.89 +0.6
939,496 - CCNA_00861 0.89 +0.4
939,507 - +0.6
939,633 + -0.0
939,670 + -0.6
939,678 + -0.8
939,709 - +0.1
939,750 + -0.3
939,750 + -0.4
939,758 - +0.4
939,758 - -0.1
939,758 - +0.4
939,798 - +1.1

Or see this region's nucleotide sequence