Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00679

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00677 and CCNA_00678 are separated by 4 nucleotidesCCNA_00678 and CCNA_00679 are separated by 536 nucleotidesCCNA_00679 and CCNA_00680 are separated by 132 nucleotidesCCNA_00680 and CCNA_00681 overlap by 4 nucleotides CCNA_00677: CCNA_00677 - LSU ribosomal protein L1P, at 733,882 to 734,571 _00677 CCNA_00678: CCNA_00678 - LSU ribosomal protein L11P, at 734,576 to 735,007 _00678 CCNA_00679: CCNA_00679 - transposase, IS116/IS110/IS902 family, at 735,544 to 736,479 _00679 CCNA_00680: CCNA_00680 - 2-hydroxychromene-2-carboxylate isomerase, at 736,612 to 737,247 _00680 CCNA_00681: CCNA_00681 - short chain dehydrogenase, at 737,244 to 737,981 _00681 Position (kb) 735 736 737Strain fitness (log2 ratio) -2 -1 0 1at 735.162 kb on - strandat 735.173 kb on + strandat 735.188 kb on + strandat 735.188 kb on + strandat 735.188 kb on + strandat 735.188 kb on + strandat 735.188 kb on + strandat 735.188 kb on + strandat 735.188 kb on + strandat 735.188 kb on + strandat 735.188 kb on + strandat 735.188 kb on + strandat 735.196 kb on - strandat 735.196 kb on - strandat 735.196 kb on - strandat 735.196 kb on - strandat 735.196 kb on - strandat 735.196 kb on - strandat 735.196 kb on - strandat 735.196 kb on - strandat 735.198 kb on - strandat 735.229 kb on + strandat 735.255 kb on + strandat 735.266 kb on - strandat 735.283 kb on + strandat 735.283 kb on + strandat 735.288 kb on + strandat 735.291 kb on - strandat 735.291 kb on - strandat 735.291 kb on - strandat 736.489 kb on + strandat 736.499 kb on + strandat 736.499 kb on + strandat 736.499 kb on + strandat 736.499 kb on + strandat 736.499 kb on + strandat 736.512 kb on + strandat 736.544 kb on - strandat 736.559 kb on - strandat 736.564 kb on - strandat 736.564 kb on - strandat 736.568 kb on + strandat 736.577 kb on - strandat 736.584 kb on - strandat 736.588 kb on + strandat 736.602 kb on - strandat 736.621 kb on + strandat 736.639 kb on - strandat 736.639 kb on - strandat 736.644 kb on - strandat 736.668 kb on + strandat 736.727 kb on + strand, within CCNA_00680at 736.743 kb on - strand, within CCNA_00680at 736.748 kb on - strand, within CCNA_00680at 736.753 kb on - strand, within CCNA_00680at 736.753 kb on - strand, within CCNA_00680at 736.753 kb on - strand, within CCNA_00680at 736.753 kb on - strand, within CCNA_00680at 736.753 kb on - strand, within CCNA_00680at 736.753 kb on - strand, within CCNA_00680at 736.797 kb on - strand, within CCNA_00680at 736.824 kb on + strand, within CCNA_00680at 736.832 kb on - strand, within CCNA_00680at 736.858 kb on - strand, within CCNA_00680at 736.862 kb on + strand, within CCNA_00680at 736.862 kb on + strand, within CCNA_00680at 736.864 kb on + strand, within CCNA_00680at 736.883 kb on - strand, within CCNA_00680at 736.883 kb on - strand, within CCNA_00680at 736.885 kb on + strand, within CCNA_00680at 736.905 kb on + strand, within CCNA_00680at 737.008 kb on + strand, within CCNA_00680at 737.008 kb on + strand, within CCNA_00680at 737.034 kb on + strand, within CCNA_00680at 737.078 kb on + strand, within CCNA_00680at 737.092 kb on + strand, within CCNA_00680at 737.172 kb on + strand, within CCNA_00680at 737.179 kb on - strand, within CCNA_00680at 737.215 kb on - strandat 737.239 kb on + strandat 737.270 kb on + strandat 737.270 kb on + strandat 737.270 kb on + strandat 737.270 kb on + strandat 737.270 kb on + strandat 737.270 kb on + strandat 737.270 kb on + strandat 737.270 kb on + strandat 737.276 kb on + strandat 737.278 kb on - strandat 737.278 kb on - strandat 737.278 kb on - strandat 737.278 kb on - strandat 737.278 kb on - strandat 737.283 kb on + strandat 737.283 kb on + strandat 737.283 kb on + strandat 737.297 kb on - strandat 737.312 kb on + strandat 737.317 kb on + strandat 737.320 kb on - strand, within CCNA_00681at 737.349 kb on + strand, within CCNA_00681at 737.349 kb on - strand, within CCNA_00681at 737.360 kb on + strand, within CCNA_00681at 737.377 kb on + strand, within CCNA_00681at 737.379 kb on - strand, within CCNA_00681at 737.397 kb on + strand, within CCNA_00681at 737.397 kb on + strand, within CCNA_00681at 737.397 kb on + strand, within CCNA_00681at 737.397 kb on + strand, within CCNA_00681at 737.405 kb on - strand, within CCNA_00681at 737.440 kb on - strand, within CCNA_00681at 737.476 kb on + strand, within CCNA_00681

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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735,162 - +0.6
735,173 + +0.5
735,188 + +1.1
735,188 + -1.2
735,188 + +0.5
735,188 + +0.5
735,188 + -0.4
735,188 + +0.2
735,188 + +0.5
735,188 + -0.1
735,188 + +0.1
735,188 + -0.1
735,196 - -0.2
735,196 - -0.7
735,196 - -1.8
735,196 - -0.3
735,196 - -0.6
735,196 - -1.2
735,196 - +0.7
735,196 - -0.2
735,198 - -0.0
735,229 + -0.6
735,255 + +0.3
735,266 - +0.0
735,283 + -0.1
735,283 + +0.0
735,288 + -0.1
735,291 - -0.2
735,291 - -0.1
735,291 - +0.5
736,489 + +0.1
736,499 + +0.3
736,499 + +0.3
736,499 + -0.6
736,499 + +0.6
736,499 + +0.4
736,512 + -0.7
736,544 - +0.2
736,559 - -0.7
736,564 - +0.5
736,564 - -0.2
736,568 + +0.0
736,577 - -0.6
736,584 - -0.5
736,588 + +1.3
736,602 - -0.3
736,621 + +0.1
736,639 - -0.2
736,639 - -1.5
736,644 - +0.6
736,668 + -1.3
736,727 + CCNA_00680 0.18 +1.1
736,743 - CCNA_00680 0.21 -1.2
736,748 - CCNA_00680 0.21 -0.7
736,753 - CCNA_00680 0.22 -0.2
736,753 - CCNA_00680 0.22 -0.2
736,753 - CCNA_00680 0.22 +0.2
736,753 - CCNA_00680 0.22 -1.7
736,753 - CCNA_00680 0.22 -0.8
736,753 - CCNA_00680 0.22 -0.2
736,797 - CCNA_00680 0.29 -0.1
736,824 + CCNA_00680 0.33 +0.2
736,832 - CCNA_00680 0.35 +0.4
736,858 - CCNA_00680 0.39 +0.3
736,862 + CCNA_00680 0.39 -0.0
736,862 + CCNA_00680 0.39 -0.3
736,864 + CCNA_00680 0.40 -1.4
736,883 - CCNA_00680 0.43 +0.0
736,883 - CCNA_00680 0.43 -0.0
736,885 + CCNA_00680 0.43 -0.3
736,905 + CCNA_00680 0.46 +0.2
737,008 + CCNA_00680 0.62 -0.8
737,008 + CCNA_00680 0.62 -1.7
737,034 + CCNA_00680 0.66 +0.5
737,078 + CCNA_00680 0.73 +0.4
737,092 + CCNA_00680 0.75 +0.2
737,172 + CCNA_00680 0.88 -0.3
737,179 - CCNA_00680 0.89 -0.9
737,215 - +0.7
737,239 + -0.7
737,270 + +0.5
737,270 + -0.7
737,270 + +0.3
737,270 + -1.2
737,270 + -1.1
737,270 + +0.8
737,270 + +0.1
737,270 + +0.1
737,276 + -1.1
737,278 - +0.1
737,278 - -0.7
737,278 - -0.6
737,278 - +1.1
737,278 - -0.4
737,283 + +0.0
737,283 + -0.1
737,283 + -0.3
737,297 - +1.4
737,312 + -1.6
737,317 + -1.6
737,320 - CCNA_00681 0.10 +0.1
737,349 + CCNA_00681 0.14 +0.1
737,349 - CCNA_00681 0.14 +0.3
737,360 + CCNA_00681 0.16 -0.5
737,377 + CCNA_00681 0.18 -0.4
737,379 - CCNA_00681 0.18 -1.9
737,397 + CCNA_00681 0.21 -0.2
737,397 + CCNA_00681 0.21 +0.5
737,397 + CCNA_00681 0.21 -0.3
737,397 + CCNA_00681 0.21 -1.4
737,405 - CCNA_00681 0.22 +0.2
737,440 - CCNA_00681 0.27 +1.0
737,476 + CCNA_00681 0.31 -1.1

Or see this region's nucleotide sequence