Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00551 and CCNA_00552 are separated by 255 nucleotides CCNA_00552 and CCNA_00553 overlap by 4 nucleotides CCNA_00553 and CCNA_00554 are separated by 65 nucleotides CCNA_00554 and CCNA_00555 are separated by 72 nucleotides
CCNA_00551: CCNA_00551 - hypothetical protein, at 568,260 to 568,700
_00551
CCNA_00552: CCNA_00552 - cupin superfamily protein, at 568,956 to 569,426
_00552
CCNA_00553: CCNA_00553 - hydroxyacylglutathione hydrolase, at 569,423 to 570,172
_00553
CCNA_00554: CCNA_00554 - methyltransferase, at 570,238 to 571,044
_00554
CCNA_00555: CCNA_00555 - nitrogen regulatory protein P-II, at 571,117 to 571,461
_00555
Position (kb) 569
570
571 Strain fitness (log2 ratio) -1
0
1
2 at 568.450 kb on - strand, within CCNA_00551 at 568.457 kb on + strand, within CCNA_00551 at 568.495 kb on - strand, within CCNA_00551 at 568.550 kb on + strand, within CCNA_00551 at 568.558 kb on - strand, within CCNA_00551 at 568.596 kb on + strand, within CCNA_00551 at 568.601 kb on + strand, within CCNA_00551 at 568.601 kb on + strand, within CCNA_00551 at 568.601 kb on + strand, within CCNA_00551 at 568.601 kb on + strand, within CCNA_00551 at 568.601 kb on + strand, within CCNA_00551 at 568.608 kb on + strand, within CCNA_00551 at 568.609 kb on - strand, within CCNA_00551 at 568.609 kb on - strand, within CCNA_00551 at 568.609 kb on - strand, within CCNA_00551 at 568.609 kb on - strand, within CCNA_00551 at 568.609 kb on - strand, within CCNA_00551 at 568.609 kb on - strand, within CCNA_00551 at 568.633 kb on + strand, within CCNA_00551 at 568.634 kb on - strand, within CCNA_00551 at 568.691 kb on + strand at 568.691 kb on + strand at 568.699 kb on - strand at 568.699 kb on - strand at 568.699 kb on - strand at 568.699 kb on - strand at 568.699 kb on - strand at 568.699 kb on - strand at 568.758 kb on - strand at 568.785 kb on + strand at 568.857 kb on - strand at 568.866 kb on + strand at 568.879 kb on - strand at 568.884 kb on + strand at 568.888 kb on + strand at 568.896 kb on - strand at 568.896 kb on - strand at 568.913 kb on + strand at 568.918 kb on + strand at 568.921 kb on - strand at 568.926 kb on - strand at 568.926 kb on - strand at 568.930 kb on + strand at 568.970 kb on - strand at 568.972 kb on + strand at 568.980 kb on - strand at 568.980 kb on - strand at 569.039 kb on + strand, within CCNA_00552 at 569.042 kb on - strand, within CCNA_00552 at 569.073 kb on + strand, within CCNA_00552 at 569.080 kb on + strand, within CCNA_00552 at 569.094 kb on - strand, within CCNA_00552 at 569.117 kb on + strand, within CCNA_00552 at 569.117 kb on + strand, within CCNA_00552 at 569.117 kb on + strand, within CCNA_00552 at 569.125 kb on - strand, within CCNA_00552 at 569.125 kb on - strand, within CCNA_00552 at 569.125 kb on - strand, within CCNA_00552 at 569.129 kb on + strand, within CCNA_00552 at 569.132 kb on + strand, within CCNA_00552 at 569.137 kb on - strand, within CCNA_00552 at 569.205 kb on + strand, within CCNA_00552 at 569.205 kb on + strand, within CCNA_00552 at 569.213 kb on - strand, within CCNA_00552 at 569.226 kb on + strand, within CCNA_00552 at 569.226 kb on + strand, within CCNA_00552 at 569.234 kb on - strand, within CCNA_00552 at 569.236 kb on - strand, within CCNA_00552 at 569.238 kb on + strand, within CCNA_00552 at 569.238 kb on + strand, within CCNA_00552 at 569.241 kb on - strand, within CCNA_00552 at 569.241 kb on - strand, within CCNA_00552 at 569.267 kb on - strand, within CCNA_00552 at 569.279 kb on - strand, within CCNA_00552 at 569.334 kb on - strand, within CCNA_00552 at 569.359 kb on - strand, within CCNA_00552 at 569.396 kb on + strand at 569.402 kb on + strand at 569.404 kb on - strand at 569.404 kb on - strand at 569.404 kb on - strand at 569.410 kb on - strand at 569.428 kb on + strand at 569.436 kb on - strand at 569.438 kb on + strand at 569.438 kb on + strand at 569.438 kb on + strand at 569.438 kb on + strand at 569.438 kb on + strand at 569.446 kb on - strand at 569.446 kb on - strand at 569.446 kb on - strand at 569.446 kb on - strand at 569.446 kb on - strand at 569.446 kb on - strand at 569.493 kb on - strand at 569.498 kb on - strand, within CCNA_00553 at 569.508 kb on - strand, within CCNA_00553 at 569.589 kb on + strand, within CCNA_00553 at 569.589 kb on + strand, within CCNA_00553 at 569.589 kb on + strand, within CCNA_00553 at 569.589 kb on + strand, within CCNA_00553 at 569.597 kb on - strand, within CCNA_00553 at 569.597 kb on - strand, within CCNA_00553 at 569.597 kb on - strand, within CCNA_00553 at 569.602 kb on + strand, within CCNA_00553 at 569.626 kb on - strand, within CCNA_00553 at 569.655 kb on + strand, within CCNA_00553 at 569.655 kb on + strand, within CCNA_00553 at 569.663 kb on - strand, within CCNA_00553 at 569.680 kb on - strand, within CCNA_00553 at 569.712 kb on + strand, within CCNA_00553 at 569.726 kb on + strand, within CCNA_00553 at 569.739 kb on + strand, within CCNA_00553 at 569.747 kb on - strand, within CCNA_00553 at 569.759 kb on + strand, within CCNA_00553 at 569.759 kb on + strand, within CCNA_00553 at 569.767 kb on - strand, within CCNA_00553 at 569.877 kb on + strand, within CCNA_00553 at 569.881 kb on + strand, within CCNA_00553 at 569.881 kb on + strand, within CCNA_00553 at 569.889 kb on - strand, within CCNA_00553 at 569.901 kb on + strand, within CCNA_00553 at 569.906 kb on + strand, within CCNA_00553 at 569.906 kb on + strand, within CCNA_00553 at 569.914 kb on - strand, within CCNA_00553 at 569.990 kb on - strand, within CCNA_00553 at 570.012 kb on + strand, within CCNA_00553 at 570.016 kb on + strand, within CCNA_00553 at 570.057 kb on - strand, within CCNA_00553 at 570.077 kb on - strand, within CCNA_00553 at 570.095 kb on - strand, within CCNA_00553 at 570.107 kb on - strand at 570.169 kb on + strand at 570.177 kb on - strand at 570.177 kb on - strand at 570.177 kb on - strand at 570.185 kb on + strand at 570.203 kb on + strand at 570.211 kb on - strand at 570.250 kb on - strand at 570.265 kb on + strand at 570.267 kb on + strand at 570.267 kb on + strand at 570.288 kb on - strand at 570.326 kb on - strand, within CCNA_00554 at 570.327 kb on + strand, within CCNA_00554 at 570.327 kb on + strand, within CCNA_00554 at 570.327 kb on + strand, within CCNA_00554 at 570.335 kb on - strand, within CCNA_00554 at 570.335 kb on - strand, within CCNA_00554 at 570.369 kb on - strand, within CCNA_00554 at 570.369 kb on - strand, within CCNA_00554 at 570.389 kb on - strand, within CCNA_00554 at 570.433 kb on + strand, within CCNA_00554 at 570.445 kb on + strand, within CCNA_00554 at 570.457 kb on - strand, within CCNA_00554 at 570.510 kb on + strand, within CCNA_00554 at 570.512 kb on + strand, within CCNA_00554 at 570.518 kb on - strand, within CCNA_00554 at 570.518 kb on - strand, within CCNA_00554 at 570.631 kb on + strand, within CCNA_00554 at 570.649 kb on - strand, within CCNA_00554 at 570.656 kb on - strand, within CCNA_00554 at 570.680 kb on + strand, within CCNA_00554 at 570.700 kb on - strand, within CCNA_00554 at 570.743 kb on - strand, within CCNA_00554 at 570.752 kb on + strand, within CCNA_00554 at 570.760 kb on - strand, within CCNA_00554 at 570.760 kb on - strand, within CCNA_00554 at 570.760 kb on - strand, within CCNA_00554 at 570.760 kb on - strand, within CCNA_00554 at 570.760 kb on - strand, within CCNA_00554 at 570.797 kb on - strand, within CCNA_00554 at 570.805 kb on - strand, within CCNA_00554 at 570.806 kb on + strand, within CCNA_00554 at 570.807 kb on - strand, within CCNA_00554 at 570.821 kb on + strand, within CCNA_00554 at 570.821 kb on + strand, within CCNA_00554 at 570.824 kb on - strand, within CCNA_00554 at 570.824 kb on - strand, within CCNA_00554 at 570.824 kb on - strand, within CCNA_00554 at 570.824 kb on - strand, within CCNA_00554 at 570.827 kb on + strand, within CCNA_00554 at 570.829 kb on - strand, within CCNA_00554 at 570.871 kb on + strand, within CCNA_00554 at 570.891 kb on + strand, within CCNA_00554 at 570.894 kb on - strand, within CCNA_00554 at 570.945 kb on - strand, within CCNA_00554 at 570.947 kb on + strand, within CCNA_00554 at 570.950 kb on - strand, within CCNA_00554 at 570.950 kb on - strand, within CCNA_00554 at 570.955 kb on - strand, within CCNA_00554 at 570.996 kb on + strand at 570.996 kb on + strand at 570.999 kb on - strand at 570.999 kb on - strand at 571.004 kb on - strand at 571.026 kb on + strand at 571.031 kb on + strand at 571.031 kb on + strand at 571.031 kb on + strand at 571.039 kb on - strand at 571.039 kb on - strand at 571.041 kb on - strand at 571.075 kb on + strand at 571.102 kb on + strand at 571.102 kb on + strand at 571.115 kb on + strand at 571.151 kb on + strand at 571.164 kb on + strand, within CCNA_00555
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 568,450 - CCNA_00551 0.43 -0.3 568,457 + CCNA_00551 0.45 +1.8 568,495 - CCNA_00551 0.53 +0.5 568,550 + CCNA_00551 0.66 +2.2 568,558 - CCNA_00551 0.68 +0.4 568,596 + CCNA_00551 0.76 +0.4 568,601 + CCNA_00551 0.77 +0.8 568,601 + CCNA_00551 0.77 -0.6 568,601 + CCNA_00551 0.77 +0.5 568,601 + CCNA_00551 0.77 -0.1 568,601 + CCNA_00551 0.77 +0.1 568,608 + CCNA_00551 0.79 -0.0 568,609 - CCNA_00551 0.79 +0.7 568,609 - CCNA_00551 0.79 -0.2 568,609 - CCNA_00551 0.79 -0.6 568,609 - CCNA_00551 0.79 +0.8 568,609 - CCNA_00551 0.79 -0.0 568,609 - CCNA_00551 0.79 +1.0 568,633 + CCNA_00551 0.85 -0.2 568,634 - CCNA_00551 0.85 +0.5 568,691 + +0.4 568,691 + +0.0 568,699 - -0.1 568,699 - -0.5 568,699 - +1.0 568,699 - +0.1 568,699 - +0.0 568,699 - -0.9 568,758 - -0.0 568,785 + +0.3 568,857 - +0.1 568,866 + -0.4 568,879 - +0.8 568,884 + +1.2 568,888 + -0.1 568,896 - +0.1 568,896 - +0.3 568,913 + +0.0 568,918 + -0.7 568,921 - -0.2 568,926 - -0.4 568,926 - +1.2 568,930 + -0.2 568,970 - +0.1 568,972 + +0.4 568,980 - -0.7 568,980 - +0.3 569,039 + CCNA_00552 0.18 -0.5 569,042 - CCNA_00552 0.18 +0.5 569,073 + CCNA_00552 0.25 -0.0 569,080 + CCNA_00552 0.26 -0.8 569,094 - CCNA_00552 0.29 +0.5 569,117 + CCNA_00552 0.34 +0.1 569,117 + CCNA_00552 0.34 -0.2 569,117 + CCNA_00552 0.34 -0.9 569,125 - CCNA_00552 0.36 +0.6 569,125 - CCNA_00552 0.36 +0.1 569,125 - CCNA_00552 0.36 +0.4 569,129 + CCNA_00552 0.37 -0.5 569,132 + CCNA_00552 0.37 -0.4 569,137 - CCNA_00552 0.38 -0.0 569,205 + CCNA_00552 0.53 +0.3 569,205 + CCNA_00552 0.53 -0.1 569,213 - CCNA_00552 0.55 +0.2 569,226 + CCNA_00552 0.57 +0.1 569,226 + CCNA_00552 0.57 +0.6 569,234 - CCNA_00552 0.59 +0.5 569,236 - CCNA_00552 0.59 +0.2 569,238 + CCNA_00552 0.60 -1.0 569,238 + CCNA_00552 0.60 -1.1 569,241 - CCNA_00552 0.61 +0.5 569,241 - CCNA_00552 0.61 -0.3 569,267 - CCNA_00552 0.66 +0.0 569,279 - CCNA_00552 0.69 +0.2 569,334 - CCNA_00552 0.80 +0.4 569,359 - CCNA_00552 0.86 -0.0 569,396 + -0.1 569,402 + +0.1 569,404 - +1.1 569,404 - +0.9 569,404 - +0.7 569,410 - +0.5 569,428 + -1.4 569,436 - -0.1 569,438 + +0.5 569,438 + +0.7 569,438 + +0.6 569,438 + +0.5 569,438 + +0.5 569,446 - +0.2 569,446 - +0.3 569,446 - -0.1 569,446 - +0.1 569,446 - -0.3 569,446 - +0.3 569,493 - -0.4 569,498 - CCNA_00553 0.10 +0.1 569,508 - CCNA_00553 0.11 +0.6 569,589 + CCNA_00553 0.22 +0.1 569,589 + CCNA_00553 0.22 +0.1 569,589 + CCNA_00553 0.22 -0.7 569,589 + CCNA_00553 0.22 -1.2 569,597 - CCNA_00553 0.23 -0.4 569,597 - CCNA_00553 0.23 -0.5 569,597 - CCNA_00553 0.23 -0.0 569,602 + CCNA_00553 0.24 +0.3 569,626 - CCNA_00553 0.27 +0.2 569,655 + CCNA_00553 0.31 +0.2 569,655 + CCNA_00553 0.31 +0.2 569,663 - CCNA_00553 0.32 -0.1 569,680 - CCNA_00553 0.34 +0.1 569,712 + CCNA_00553 0.39 -0.3 569,726 + CCNA_00553 0.40 -0.7 569,739 + CCNA_00553 0.42 -0.2 569,747 - CCNA_00553 0.43 -0.0 569,759 + CCNA_00553 0.45 -0.1 569,759 + CCNA_00553 0.45 -0.4 569,767 - CCNA_00553 0.46 -0.9 569,877 + CCNA_00553 0.61 -0.5 569,881 + CCNA_00553 0.61 -0.1 569,881 + CCNA_00553 0.61 +2.5 569,889 - CCNA_00553 0.62 -0.0 569,901 + CCNA_00553 0.64 +0.2 569,906 + CCNA_00553 0.64 -0.3 569,906 + CCNA_00553 0.64 +0.2 569,914 - CCNA_00553 0.65 -0.1 569,990 - CCNA_00553 0.76 -0.3 570,012 + CCNA_00553 0.79 -0.1 570,016 + CCNA_00553 0.79 +0.1 570,057 - CCNA_00553 0.85 +0.2 570,077 - CCNA_00553 0.87 +1.2 570,095 - CCNA_00553 0.90 +1.3 570,107 - +1.0 570,169 + -1.3 570,177 - -0.3 570,177 - -0.2 570,177 - +0.7 570,185 + +0.5 570,203 + -0.3 570,211 - -1.0 570,250 - +0.1 570,265 + +0.5 570,267 + +0.2 570,267 + +0.2 570,288 - -0.1 570,326 - CCNA_00554 0.11 -0.6 570,327 + CCNA_00554 0.11 +0.3 570,327 + CCNA_00554 0.11 +0.5 570,327 + CCNA_00554 0.11 +0.2 570,335 - CCNA_00554 0.12 +0.1 570,335 - CCNA_00554 0.12 -0.4 570,369 - CCNA_00554 0.16 +0.3 570,369 - CCNA_00554 0.16 +0.7 570,389 - CCNA_00554 0.19 +1.2 570,433 + CCNA_00554 0.24 +0.7 570,445 + CCNA_00554 0.26 +0.2 570,457 - CCNA_00554 0.27 +0.4 570,510 + CCNA_00554 0.34 +0.4 570,512 + CCNA_00554 0.34 +0.8 570,518 - CCNA_00554 0.35 -0.3 570,518 - CCNA_00554 0.35 +0.1 570,631 + CCNA_00554 0.49 -0.3 570,649 - CCNA_00554 0.51 -0.2 570,656 - CCNA_00554 0.52 -0.0 570,680 + CCNA_00554 0.55 +1.7 570,700 - CCNA_00554 0.57 +0.7 570,743 - CCNA_00554 0.63 -0.0 570,752 + CCNA_00554 0.64 +0.5 570,760 - CCNA_00554 0.65 +0.7 570,760 - CCNA_00554 0.65 +0.3 570,760 - CCNA_00554 0.65 +0.2 570,760 - CCNA_00554 0.65 +0.1 570,760 - CCNA_00554 0.65 +0.9 570,797 - CCNA_00554 0.69 +0.5 570,805 - CCNA_00554 0.70 -0.5 570,806 + CCNA_00554 0.70 +0.3 570,807 - CCNA_00554 0.71 -0.8 570,821 + CCNA_00554 0.72 +0.5 570,821 + CCNA_00554 0.72 +0.0 570,824 - CCNA_00554 0.73 -0.1 570,824 - CCNA_00554 0.73 +0.1 570,824 - CCNA_00554 0.73 +0.1 570,824 - CCNA_00554 0.73 -0.3 570,827 + CCNA_00554 0.73 +0.2 570,829 - CCNA_00554 0.73 -0.1 570,871 + CCNA_00554 0.78 +0.1 570,891 + CCNA_00554 0.81 +0.3 570,894 - CCNA_00554 0.81 -0.3 570,945 - CCNA_00554 0.88 -0.0 570,947 + CCNA_00554 0.88 +0.5 570,950 - CCNA_00554 0.88 -1.1 570,950 - CCNA_00554 0.88 -0.1 570,955 - CCNA_00554 0.89 +0.0 570,996 + -0.1 570,996 + +0.2 570,999 - -0.1 570,999 - +0.1 571,004 - -0.1 571,026 + -0.2 571,031 + -0.5 571,031 + -0.6 571,031 + +0.6 571,039 - +0.3 571,039 - +0.4 571,041 - +0.3 571,075 + -0.7 571,102 + +0.0 571,102 + +0.1 571,115 + +0.7 571,151 + -0.2 571,164 + CCNA_00555 0.14 +0.1
Or see this region's nucleotide sequence