Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00518

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00516 and CCNA_00517 are separated by 2 nucleotidesCCNA_00517 and CCNA_00518 are separated by 87 nucleotidesCCNA_00518 and CCNA_00519 are separated by 157 nucleotides CCNA_00516: CCNA_00516 - integral membrane protein, at 531,683 to 532,432 _00516 CCNA_00517: CCNA_00517 - peptidyl-tRNA hydrolase, at 532,435 to 533,052 _00517 CCNA_00518: CCNA_00518 - LSU ribosomal protein L25P, at 533,140 to 533,733 _00518 CCNA_00519: CCNA_00519 - hypothetical protein, at 533,891 to 534,967 _00519 Position (kb) 533 534Strain fitness (log2 ratio) -2 -1 0 1at 532.151 kb on + strand, within CCNA_00516at 532.170 kb on + strand, within CCNA_00516at 532.248 kb on - strand, within CCNA_00516at 532.248 kb on - strand, within CCNA_00516at 532.267 kb on + strand, within CCNA_00516at 532.272 kb on + strand, within CCNA_00516at 532.276 kb on + strand, within CCNA_00516at 532.280 kb on - strand, within CCNA_00516at 532.280 kb on - strand, within CCNA_00516at 532.319 kb on + strand, within CCNA_00516at 532.319 kb on - strand, within CCNA_00516at 532.355 kb on + strand, within CCNA_00516at 532.376 kb on - strandat 532.378 kb on + strandat 532.469 kb on - strandat 532.488 kb on - strandat 533.099 kb on - strandat 533.112 kb on - strandat 533.129 kb on - strandat 533.223 kb on + strand, within CCNA_00518at 533.266 kb on - strand, within CCNA_00518at 533.363 kb on - strand, within CCNA_00518at 533.437 kb on + strand, within CCNA_00518at 533.452 kb on + strand, within CCNA_00518at 533.859 kb on + strandat 533.877 kb on - strandat 533.921 kb on + strandat 533.921 kb on + strandat 533.921 kb on + strandat 533.922 kb on + strandat 533.922 kb on + strandat 533.929 kb on - strandat 533.929 kb on - strandat 534.004 kb on + strand, within CCNA_00519at 534.021 kb on + strand, within CCNA_00519at 534.052 kb on + strand, within CCNA_00519at 534.056 kb on + strand, within CCNA_00519at 534.056 kb on + strand, within CCNA_00519at 534.056 kb on + strand, within CCNA_00519at 534.060 kb on - strand, within CCNA_00519at 534.067 kb on + strand, within CCNA_00519at 534.118 kb on - strand, within CCNA_00519at 534.125 kb on - strand, within CCNA_00519at 534.126 kb on - strand, within CCNA_00519at 534.165 kb on - strand, within CCNA_00519at 534.165 kb on - strand, within CCNA_00519at 534.229 kb on + strand, within CCNA_00519at 534.250 kb on + strand, within CCNA_00519at 534.280 kb on + strand, within CCNA_00519at 534.288 kb on - strand, within CCNA_00519at 534.288 kb on - strand, within CCNA_00519at 534.288 kb on - strand, within CCNA_00519at 534.349 kb on + strand, within CCNA_00519at 534.357 kb on - strand, within CCNA_00519at 534.376 kb on - strand, within CCNA_00519at 534.412 kb on + strand, within CCNA_00519at 534.420 kb on - strand, within CCNA_00519at 534.420 kb on - strand, within CCNA_00519at 534.420 kb on - strand, within CCNA_00519at 534.437 kb on + strand, within CCNA_00519at 534.468 kb on + strand, within CCNA_00519at 534.476 kb on - strand, within CCNA_00519at 534.479 kb on + strand, within CCNA_00519at 534.486 kb on - strand, within CCNA_00519at 534.492 kb on - strand, within CCNA_00519at 534.501 kb on - strand, within CCNA_00519at 534.509 kb on + strand, within CCNA_00519at 534.542 kb on - strand, within CCNA_00519at 534.544 kb on - strand, within CCNA_00519at 534.557 kb on - strand, within CCNA_00519at 534.580 kb on - strand, within CCNA_00519at 534.595 kb on + strand, within CCNA_00519at 534.658 kb on - strand, within CCNA_00519at 534.663 kb on + strand, within CCNA_00519at 534.671 kb on - strand, within CCNA_00519at 534.676 kb on - strand, within CCNA_00519at 534.706 kb on - strand, within CCNA_00519at 534.726 kb on + strand, within CCNA_00519at 534.726 kb on + strand, within CCNA_00519

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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532,151 + CCNA_00516 0.62 +0.3
532,170 + CCNA_00516 0.65 +0.1
532,248 - CCNA_00516 0.75 +0.6
532,248 - CCNA_00516 0.75 +0.4
532,267 + CCNA_00516 0.78 -0.7
532,272 + CCNA_00516 0.79 +0.2
532,276 + CCNA_00516 0.79 -0.1
532,280 - CCNA_00516 0.80 +1.1
532,280 - CCNA_00516 0.80 -0.0
532,319 + CCNA_00516 0.85 -0.0
532,319 - CCNA_00516 0.85 +0.1
532,355 + CCNA_00516 0.90 -2.2
532,376 - -0.8
532,378 + -0.5
532,469 - +0.4
532,488 - -0.7
533,099 - +0.7
533,112 - +0.0
533,129 - +0.7
533,223 + CCNA_00518 0.14 -1.0
533,266 - CCNA_00518 0.21 +0.3
533,363 - CCNA_00518 0.38 -0.9
533,437 + CCNA_00518 0.50 -1.4
533,452 + CCNA_00518 0.53 -0.9
533,859 + -1.6
533,877 - +0.6
533,921 + -0.7
533,921 + -0.0
533,921 + +1.1
533,922 + -0.6
533,922 + -1.3
533,929 - +0.5
533,929 - +0.3
534,004 + CCNA_00519 0.10 -0.2
534,021 + CCNA_00519 0.12 -0.2
534,052 + CCNA_00519 0.15 -1.2
534,056 + CCNA_00519 0.15 -0.0
534,056 + CCNA_00519 0.15 -1.2
534,056 + CCNA_00519 0.15 -1.0
534,060 - CCNA_00519 0.16 +0.7
534,067 + CCNA_00519 0.16 -0.9
534,118 - CCNA_00519 0.21 -1.0
534,125 - CCNA_00519 0.22 -0.7
534,126 - CCNA_00519 0.22 -0.0
534,165 - CCNA_00519 0.25 +1.7
534,165 - CCNA_00519 0.25 +0.6
534,229 + CCNA_00519 0.31 -0.1
534,250 + CCNA_00519 0.33 -1.6
534,280 + CCNA_00519 0.36 -0.8
534,288 - CCNA_00519 0.37 +0.6
534,288 - CCNA_00519 0.37 -2.0
534,288 - CCNA_00519 0.37 -0.2
534,349 + CCNA_00519 0.43 +0.8
534,357 - CCNA_00519 0.43 +0.3
534,376 - CCNA_00519 0.45 -0.4
534,412 + CCNA_00519 0.48 -1.0
534,420 - CCNA_00519 0.49 -0.1
534,420 - CCNA_00519 0.49 -0.8
534,420 - CCNA_00519 0.49 -0.1
534,437 + CCNA_00519 0.51 -0.2
534,468 + CCNA_00519 0.54 -1.0
534,476 - CCNA_00519 0.54 +0.4
534,479 + CCNA_00519 0.55 +0.1
534,486 - CCNA_00519 0.55 -0.3
534,492 - CCNA_00519 0.56 -0.7
534,501 - CCNA_00519 0.57 -0.3
534,509 + CCNA_00519 0.57 +0.2
534,542 - CCNA_00519 0.60 -1.0
534,544 - CCNA_00519 0.61 -1.1
534,557 - CCNA_00519 0.62 -1.1
534,580 - CCNA_00519 0.64 -0.2
534,595 + CCNA_00519 0.65 +0.5
534,658 - CCNA_00519 0.71 -1.5
534,663 + CCNA_00519 0.72 -2.1
534,671 - CCNA_00519 0.72 -0.8
534,676 - CCNA_00519 0.73 +0.0
534,706 - CCNA_00519 0.76 +0.8
534,726 + CCNA_00519 0.78 +0.8
534,726 + CCNA_00519 0.78 -1.2

Or see this region's nucleotide sequence