Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00512

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00510 and CCNA_00511 overlap by 1 nucleotidesCCNA_00511 and CCNA_00512 are separated by 64 nucleotidesCCNA_00512 and CCNA_03885 are separated by 238 nucleotides CCNA_00510: CCNA_00510 - carboxymethylenebutenolidase, at 524,523 to 525,200 _00510 CCNA_00511: CCNA_00511 - carboxymethylenebutenolidase, at 525,200 to 525,880 _00511 CCNA_00512: CCNA_00512 - GTP-binding protein, probable translation factor, at 525,945 to 527,045 _00512 CCNA_03885: CCNA_03885 - Abi superfamily/CAAX amino terminal protease, at 527,284 to 527,934 _03885 Position (kb) 525 526 527 528Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 524.955 kb on + strand, within CCNA_00510at 524.964 kb on + strand, within CCNA_00510at 524.987 kb on - strand, within CCNA_00510at 525.011 kb on + strand, within CCNA_00510at 525.032 kb on + strand, within CCNA_00510at 525.032 kb on + strand, within CCNA_00510at 525.032 kb on + strand, within CCNA_00510at 525.033 kb on - strand, within CCNA_00510at 525.035 kb on + strand, within CCNA_00510at 525.040 kb on - strand, within CCNA_00510at 525.042 kb on - strand, within CCNA_00510at 525.055 kb on - strand, within CCNA_00510at 525.065 kb on + strand, within CCNA_00510at 525.072 kb on - strand, within CCNA_00510at 525.096 kb on - strand, within CCNA_00510at 525.148 kb on - strandat 525.153 kb on - strandat 525.210 kb on - strandat 525.219 kb on + strandat 525.236 kb on + strandat 525.242 kb on - strandat 525.330 kb on + strand, within CCNA_00511at 525.365 kb on - strand, within CCNA_00511at 525.365 kb on - strand, within CCNA_00511at 525.437 kb on - strand, within CCNA_00511at 525.509 kb on + strand, within CCNA_00511at 525.517 kb on - strand, within CCNA_00511at 525.517 kb on - strand, within CCNA_00511at 525.559 kb on - strand, within CCNA_00511at 525.578 kb on + strand, within CCNA_00511at 525.617 kb on - strand, within CCNA_00511at 525.664 kb on - strand, within CCNA_00511at 525.674 kb on - strand, within CCNA_00511at 525.709 kb on + strand, within CCNA_00511at 525.709 kb on + strand, within CCNA_00511at 525.717 kb on - strand, within CCNA_00511at 525.717 kb on - strand, within CCNA_00511at 525.740 kb on + strand, within CCNA_00511at 525.752 kb on + strand, within CCNA_00511at 525.828 kb on + strandat 525.829 kb on - strandat 525.835 kb on + strandat 525.836 kb on - strandat 525.843 kb on - strandat 525.843 kb on - strandat 525.862 kb on + strandat 525.862 kb on + strandat 525.870 kb on + strandat 525.878 kb on - strandat 525.890 kb on - strandat 525.943 kb on + strandat 525.951 kb on - strandat 525.951 kb on - strandat 525.971 kb on - strandat 526.057 kb on - strand, within CCNA_00512at 526.094 kb on - strand, within CCNA_00512at 526.133 kb on + strand, within CCNA_00512at 526.177 kb on - strand, within CCNA_00512at 526.179 kb on - strand, within CCNA_00512at 526.212 kb on + strand, within CCNA_00512at 526.212 kb on + strand, within CCNA_00512at 526.236 kb on + strand, within CCNA_00512at 526.244 kb on - strand, within CCNA_00512at 526.256 kb on + strand, within CCNA_00512at 526.264 kb on + strand, within CCNA_00512at 526.350 kb on + strand, within CCNA_00512at 526.350 kb on + strand, within CCNA_00512at 526.369 kb on + strand, within CCNA_00512at 526.395 kb on - strand, within CCNA_00512at 526.407 kb on + strand, within CCNA_00512at 526.452 kb on - strand, within CCNA_00512at 526.455 kb on - strand, within CCNA_00512at 526.465 kb on + strand, within CCNA_00512at 526.465 kb on + strand, within CCNA_00512at 526.473 kb on - strand, within CCNA_00512at 526.479 kb on - strand, within CCNA_00512at 526.566 kb on - strand, within CCNA_00512at 526.627 kb on - strand, within CCNA_00512at 526.629 kb on + strand, within CCNA_00512at 526.664 kb on + strand, within CCNA_00512at 526.782 kb on + strand, within CCNA_00512at 526.795 kb on + strand, within CCNA_00512at 526.802 kb on - strand, within CCNA_00512at 526.820 kb on - strand, within CCNA_00512at 526.867 kb on - strand, within CCNA_00512at 526.873 kb on + strand, within CCNA_00512at 526.873 kb on + strand, within CCNA_00512at 526.881 kb on - strand, within CCNA_00512at 526.961 kb on + strandat 526.962 kb on + strandat 526.980 kb on - strandat 526.984 kb on + strandat 526.984 kb on + strandat 526.992 kb on - strandat 526.992 kb on - strandat 526.992 kb on - strandat 527.016 kb on - strandat 527.034 kb on + strandat 527.042 kb on - strandat 527.134 kb on + strandat 527.134 kb on + strandat 527.142 kb on - strandat 527.142 kb on - strandat 527.157 kb on - strandat 527.176 kb on - strandat 527.176 kb on - strandat 527.195 kb on + strandat 527.200 kb on - strandat 527.236 kb on + strandat 527.236 kb on + strandat 527.239 kb on - strandat 527.244 kb on - strandat 527.244 kb on - strandat 527.255 kb on + strandat 527.255 kb on - strandat 527.255 kb on - strandat 527.274 kb on + strandat 527.362 kb on + strand, within CCNA_03885at 527.370 kb on - strand, within CCNA_03885at 527.372 kb on + strand, within CCNA_03885at 527.380 kb on - strand, within CCNA_03885at 527.380 kb on - strand, within CCNA_03885at 527.424 kb on - strand, within CCNA_03885at 527.438 kb on + strand, within CCNA_03885at 527.446 kb on - strand, within CCNA_03885at 527.467 kb on - strand, within CCNA_03885at 527.477 kb on - strand, within CCNA_03885at 527.494 kb on + strand, within CCNA_03885at 527.494 kb on + strand, within CCNA_03885at 527.494 kb on + strand, within CCNA_03885at 527.502 kb on - strand, within CCNA_03885at 527.502 kb on - strand, within CCNA_03885at 527.502 kb on - strand, within CCNA_03885at 527.622 kb on + strand, within CCNA_03885at 527.638 kb on + strand, within CCNA_03885at 527.645 kb on + strand, within CCNA_03885at 527.684 kb on + strand, within CCNA_03885at 527.684 kb on - strand, within CCNA_03885at 527.709 kb on - strand, within CCNA_03885at 527.761 kb on + strand, within CCNA_03885at 527.807 kb on + strand, within CCNA_03885at 527.824 kb on + strand, within CCNA_03885at 527.844 kb on + strand, within CCNA_03885at 527.844 kb on + strand, within CCNA_03885at 527.844 kb on + strand, within CCNA_03885at 527.844 kb on + strand, within CCNA_03885at 527.844 kb on - strand, within CCNA_03885at 527.852 kb on - strand, within CCNA_03885at 527.852 kb on - strand, within CCNA_03885at 527.852 kb on - strand, within CCNA_03885at 527.861 kb on + strand, within CCNA_03885at 527.888 kb on + strandat 527.888 kb on + strandat 527.896 kb on - strandat 527.900 kb on + strandat 527.923 kb on + strandat 527.923 kb on + strandat 527.955 kb on + strandat 527.984 kb on - strandat 528.003 kb on + strandat 528.003 kb on + strandat 528.010 kb on - strandat 528.011 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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524,955 + CCNA_00510 0.64 -0.1
524,964 + CCNA_00510 0.65 +0.6
524,987 - CCNA_00510 0.68 -0.0
525,011 + CCNA_00510 0.72 -0.7
525,032 + CCNA_00510 0.75 +1.2
525,032 + CCNA_00510 0.75 +0.5
525,032 + CCNA_00510 0.75 +0.7
525,033 - CCNA_00510 0.75 +0.7
525,035 + CCNA_00510 0.76 +0.1
525,040 - CCNA_00510 0.76 -0.6
525,042 - CCNA_00510 0.77 +0.3
525,055 - CCNA_00510 0.78 -0.2
525,065 + CCNA_00510 0.80 +0.8
525,072 - CCNA_00510 0.81 +0.8
525,096 - CCNA_00510 0.85 +0.1
525,148 - +1.1
525,153 - +0.5
525,210 - +0.3
525,219 + -0.3
525,236 + -0.4
525,242 - +0.3
525,330 + CCNA_00511 0.19 +0.1
525,365 - CCNA_00511 0.24 +0.7
525,365 - CCNA_00511 0.24 +0.6
525,437 - CCNA_00511 0.35 +1.8
525,509 + CCNA_00511 0.45 +0.0
525,517 - CCNA_00511 0.47 +0.2
525,517 - CCNA_00511 0.47 +1.0
525,559 - CCNA_00511 0.53 +0.0
525,578 + CCNA_00511 0.56 +0.2
525,617 - CCNA_00511 0.61 +0.4
525,664 - CCNA_00511 0.68 +0.4
525,674 - CCNA_00511 0.70 +1.3
525,709 + CCNA_00511 0.75 +2.1
525,709 + CCNA_00511 0.75 +0.2
525,717 - CCNA_00511 0.76 -0.4
525,717 - CCNA_00511 0.76 -0.3
525,740 + CCNA_00511 0.79 +0.5
525,752 + CCNA_00511 0.81 -0.5
525,828 + +0.1
525,829 - +1.3
525,835 + +0.3
525,836 - -1.8
525,843 - +0.5
525,843 - -0.0
525,862 + -0.2
525,862 + +0.5
525,870 + +0.2
525,878 - -1.0
525,890 - +0.4
525,943 + +0.8
525,951 - +0.1
525,951 - +0.1
525,971 - +0.8
526,057 - CCNA_00512 0.10 -0.1
526,094 - CCNA_00512 0.14 +0.2
526,133 + CCNA_00512 0.17 +0.2
526,177 - CCNA_00512 0.21 -1.2
526,179 - CCNA_00512 0.21 -1.7
526,212 + CCNA_00512 0.24 -0.0
526,212 + CCNA_00512 0.24 -0.5
526,236 + CCNA_00512 0.26 +0.5
526,244 - CCNA_00512 0.27 -0.9
526,256 + CCNA_00512 0.28 -0.7
526,264 + CCNA_00512 0.29 -0.2
526,350 + CCNA_00512 0.37 +0.3
526,350 + CCNA_00512 0.37 -0.2
526,369 + CCNA_00512 0.39 +0.8
526,395 - CCNA_00512 0.41 +0.9
526,407 + CCNA_00512 0.42 +0.9
526,452 - CCNA_00512 0.46 -0.8
526,455 - CCNA_00512 0.46 -1.3
526,465 + CCNA_00512 0.47 +0.5
526,465 + CCNA_00512 0.47 -1.2
526,473 - CCNA_00512 0.48 -0.5
526,479 - CCNA_00512 0.49 -0.4
526,566 - CCNA_00512 0.56 -1.1
526,627 - CCNA_00512 0.62 -0.7
526,629 + CCNA_00512 0.62 -0.4
526,664 + CCNA_00512 0.65 -0.2
526,782 + CCNA_00512 0.76 -0.0
526,795 + CCNA_00512 0.77 -1.5
526,802 - CCNA_00512 0.78 -1.5
526,820 - CCNA_00512 0.79 -0.3
526,867 - CCNA_00512 0.84 -0.5
526,873 + CCNA_00512 0.84 +1.9
526,873 + CCNA_00512 0.84 +0.3
526,881 - CCNA_00512 0.85 -1.1
526,961 + -0.5
526,962 + +0.1
526,980 - -0.9
526,984 + +0.2
526,984 + -0.0
526,992 - +0.5
526,992 - +1.1
526,992 - -1.5
527,016 - -1.1
527,034 + +1.3
527,042 - -2.5
527,134 + -0.1
527,134 + -0.4
527,142 - +0.4
527,142 - +0.6
527,157 - +0.1
527,176 - -0.5
527,176 - -0.2
527,195 + -0.3
527,200 - -0.3
527,236 + +0.1
527,236 + -0.8
527,239 - +0.4
527,244 - -0.1
527,244 - +0.4
527,255 + +0.2
527,255 - +0.7
527,255 - -0.2
527,274 + +0.6
527,362 + CCNA_03885 0.12 -0.3
527,370 - CCNA_03885 0.13 +0.7
527,372 + CCNA_03885 0.14 -0.0
527,380 - CCNA_03885 0.15 -0.3
527,380 - CCNA_03885 0.15 -0.0
527,424 - CCNA_03885 0.22 -0.7
527,438 + CCNA_03885 0.24 -0.7
527,446 - CCNA_03885 0.25 +0.0
527,467 - CCNA_03885 0.28 -0.6
527,477 - CCNA_03885 0.30 -0.1
527,494 + CCNA_03885 0.32 -0.7
527,494 + CCNA_03885 0.32 +1.6
527,494 + CCNA_03885 0.32 +0.8
527,502 - CCNA_03885 0.33 +0.2
527,502 - CCNA_03885 0.33 +0.2
527,502 - CCNA_03885 0.33 -0.1
527,622 + CCNA_03885 0.52 +0.9
527,638 + CCNA_03885 0.54 +0.9
527,645 + CCNA_03885 0.55 +0.2
527,684 + CCNA_03885 0.61 +1.0
527,684 - CCNA_03885 0.61 -0.0
527,709 - CCNA_03885 0.65 +1.1
527,761 + CCNA_03885 0.73 -0.2
527,807 + CCNA_03885 0.80 +1.1
527,824 + CCNA_03885 0.83 -1.4
527,844 + CCNA_03885 0.86 -0.5
527,844 + CCNA_03885 0.86 +0.3
527,844 + CCNA_03885 0.86 +0.0
527,844 + CCNA_03885 0.86 +0.3
527,844 - CCNA_03885 0.86 -2.3
527,852 - CCNA_03885 0.87 +0.2
527,852 - CCNA_03885 0.87 -2.9
527,852 - CCNA_03885 0.87 +1.4
527,861 + CCNA_03885 0.89 +0.3
527,888 + +0.2
527,888 + -0.6
527,896 - -0.2
527,900 + +0.4
527,923 + -0.3
527,923 + -0.7
527,955 + +0.2
527,984 - -0.1
528,003 + -0.1
528,003 + +0.4
528,010 - -0.2
528,011 - +0.3

Or see this region's nucleotide sequence