Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03998 and CCNA_00464 are separated by 713 nucleotides CCNA_00464 and CCNA_00465 are separated by 242 nucleotides
CCNA_03998: CCNA_03998 - GT1/WbuB-like N-acetyl-L-fucosamine transferase, at 475,532 to 476,800
_03998
CCNA_00464: CCNA_00464 - Undecaprenyl-phosphate sugar phosphotransferase-related protein, at 477,514 to 477,678
_00464
CCNA_00465: CCNA_00465 - UDP-galactopyranose mutase, at 477,921 to 479,033
_00465
Position (kb) 477
478 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 476.536 kb on + strand, within CCNA_03998 at 476.552 kb on + strand, within CCNA_03998 at 476.562 kb on + strand, within CCNA_03998 at 476.567 kb on + strand, within CCNA_03998 at 476.570 kb on - strand, within CCNA_03998 at 476.580 kb on - strand, within CCNA_03998 at 476.590 kb on + strand, within CCNA_03998 at 476.603 kb on + strand, within CCNA_03998 at 476.608 kb on + strand, within CCNA_03998 at 476.609 kb on + strand, within CCNA_03998 at 476.666 kb on + strand, within CCNA_03998 at 476.674 kb on - strand at 476.676 kb on + strand at 476.707 kb on + strand at 476.732 kb on + strand at 476.735 kb on - strand at 476.740 kb on - strand at 476.748 kb on + strand at 476.748 kb on + strand at 476.748 kb on + strand at 476.756 kb on - strand at 476.756 kb on - strand at 476.758 kb on + strand at 476.807 kb on - strand at 476.808 kb on + strand at 476.816 kb on - strand at 476.816 kb on - strand at 476.816 kb on - strand at 476.816 kb on - strand at 476.834 kb on + strand at 476.866 kb on + strand at 476.872 kb on + strand at 476.872 kb on + strand at 476.880 kb on - strand at 476.888 kb on + strand at 476.910 kb on + strand at 476.918 kb on - strand at 477.212 kb on + strand at 477.212 kb on + strand at 477.219 kb on + strand at 477.220 kb on + strand at 477.246 kb on + strand at 477.258 kb on - strand at 477.264 kb on - strand at 477.289 kb on + strand at 477.297 kb on - strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.312 kb on - strand at 477.312 kb on - strand at 477.312 kb on - strand at 477.312 kb on - strand at 477.330 kb on - strand at 477.370 kb on - strand at 477.382 kb on + strand at 477.388 kb on - strand at 477.390 kb on - strand at 477.458 kb on + strand at 477.469 kb on + strand at 477.474 kb on + strand at 477.477 kb on - strand at 477.487 kb on - strand at 477.488 kb on - strand at 477.495 kb on + strand at 477.503 kb on - strand at 477.504 kb on + strand at 477.514 kb on - strand at 477.550 kb on + strand, within CCNA_00464 at 477.551 kb on + strand, within CCNA_00464 at 477.556 kb on + strand, within CCNA_00464 at 477.558 kb on - strand, within CCNA_00464 at 477.558 kb on - strand, within CCNA_00464 at 477.558 kb on - strand, within CCNA_00464 at 477.558 kb on - strand, within CCNA_00464 at 477.564 kb on - strand, within CCNA_00464 at 477.574 kb on - strand, within CCNA_00464 at 477.576 kb on + strand, within CCNA_00464 at 477.584 kb on - strand, within CCNA_00464 at 477.584 kb on - strand, within CCNA_00464 at 477.619 kb on + strand, within CCNA_00464 at 477.632 kb on - strand, within CCNA_00464 at 477.673 kb on - strand at 477.684 kb on + strand at 477.684 kb on + strand at 477.692 kb on - strand at 477.729 kb on + strand at 477.827 kb on + strand at 477.827 kb on + strand at 477.827 kb on + strand at 477.827 kb on + strand at 477.835 kb on - strand at 477.835 kb on - strand at 477.835 kb on - strand at 477.835 kb on - strand at 477.835 kb on - strand at 477.835 kb on - strand at 477.835 kb on - strand at 477.845 kb on - strand at 477.848 kb on + strand at 477.850 kb on + strand at 477.850 kb on + strand at 477.858 kb on - strand at 477.860 kb on + strand at 477.868 kb on - strand at 477.895 kb on + strand at 477.901 kb on + strand at 477.903 kb on - strand at 477.903 kb on - strand at 477.903 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 476,536 + CCNA_03998 0.79 +0.3 476,552 + CCNA_03998 0.80 +0.6 476,562 + CCNA_03998 0.81 +0.3 476,567 + CCNA_03998 0.82 +0.3 476,570 - CCNA_03998 0.82 -0.4 476,580 - CCNA_03998 0.83 +0.3 476,590 + CCNA_03998 0.83 +1.3 476,603 + CCNA_03998 0.84 +0.2 476,608 + CCNA_03998 0.85 +0.2 476,609 + CCNA_03998 0.85 +0.8 476,666 + CCNA_03998 0.89 +1.0 476,674 - +0.5 476,676 + -0.1 476,707 + -0.1 476,732 + -0.1 476,735 - -0.5 476,740 - -1.7 476,748 + -0.5 476,748 + +1.1 476,748 + +0.2 476,756 - -0.9 476,756 - -0.2 476,758 + -0.1 476,807 - -0.4 476,808 + +1.0 476,816 - -0.0 476,816 - -0.6 476,816 - -0.7 476,816 - +1.4 476,834 + +0.8 476,866 + -0.1 476,872 + -0.6 476,872 + +0.2 476,880 - -1.2 476,888 + +0.9 476,910 + +0.5 476,918 - -0.3 477,212 + -0.5 477,212 + -0.4 477,219 + -0.1 477,220 + +0.8 477,246 + -1.0 477,258 - -0.6 477,264 - +0.4 477,289 + +0.3 477,297 - -0.5 477,304 + -0.0 477,304 + +0.3 477,304 + -0.0 477,304 + -0.8 477,304 + -0.3 477,304 + +0.3 477,304 + +0.4 477,304 + -1.0 477,312 - +0.6 477,312 - +1.2 477,312 - -0.1 477,312 - -0.2 477,330 - -2.3 477,370 - -1.8 477,382 + +0.1 477,388 - -0.3 477,390 - -3.1 477,458 + +0.5 477,469 + +0.1 477,474 + +0.1 477,477 - -0.4 477,487 - +0.2 477,488 - +1.0 477,495 + +0.1 477,503 - +0.8 477,504 + +0.2 477,514 - -0.6 477,550 + CCNA_00464 0.22 +0.4 477,551 + CCNA_00464 0.22 +0.0 477,556 + CCNA_00464 0.25 -0.6 477,558 - CCNA_00464 0.27 -1.0 477,558 - CCNA_00464 0.27 -1.1 477,558 - CCNA_00464 0.27 -1.7 477,558 - CCNA_00464 0.27 -1.5 477,564 - CCNA_00464 0.30 +0.1 477,574 - CCNA_00464 0.36 +0.5 477,576 + CCNA_00464 0.38 +0.3 477,584 - CCNA_00464 0.42 -0.4 477,584 - CCNA_00464 0.42 +0.3 477,619 + CCNA_00464 0.64 +0.3 477,632 - CCNA_00464 0.72 -2.0 477,673 - -1.0 477,684 + -0.2 477,684 + +0.2 477,692 - -0.1 477,729 + +1.3 477,827 + +0.1 477,827 + +0.0 477,827 + +0.4 477,827 + -0.1 477,835 - -1.8 477,835 - +0.5 477,835 - -0.9 477,835 - -0.3 477,835 - -0.5 477,835 - -1.1 477,835 - -0.9 477,845 - +2.4 477,848 + -0.3 477,850 + +0.4 477,850 + +0.3 477,858 - -0.5 477,860 + -0.0 477,868 - -1.1 477,895 + +0.1 477,901 + +0.3 477,903 - -2.0 477,903 - -1.1 477,903 - -0.5
Or see this region's nucleotide sequence