Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00326

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00323 and CCNA_00324 are separated by 203 nucleotidesCCNA_00324 and CCNA_00326 are separated by 243 nucleotidesCCNA_00326 and CCNA_00327 are separated by 162 nucleotidesCCNA_00327 and CCNA_00328 are separated by 84 nucleotides CCNA_00323: CCNA_00323 - low-affinity zinc transport protein, at 336,631 to 337,728 _00323 CCNA_00324: CCNA_00324 - ExbD-family protein, at 337,932 to 338,390 _00324 CCNA_00326: CCNA_00326 - vegetatible incompatibility protein HET-E-1, at 338,634 to 339,665 _00326 CCNA_00327: CCNA_00327 - FMN-binding nitroreductase family enzyme, at 339,828 to 340,490 _00327 CCNA_00328: CCNA_00328 - monofunctional biosynthetic peptidoglycan transglycosylase MtgA, at 340,575 to 341,264 _00328 Position (kb) 338 339 340Strain fitness (log2 ratio) -2 -1 0 1at 337.671 kb on - strandat 337.693 kb on + strandat 337.706 kb on + strandat 337.823 kb on - strandat 337.844 kb on + strandat 337.850 kb on - strandat 337.850 kb on - strandat 337.891 kb on - strandat 337.920 kb on + strandat 337.960 kb on + strandat 337.970 kb on + strandat 337.999 kb on + strand, within CCNA_00324at 338.016 kb on + strand, within CCNA_00324at 338.124 kb on + strand, within CCNA_00324at 338.183 kb on - strand, within CCNA_00324at 338.241 kb on - strand, within CCNA_00324at 338.252 kb on - strand, within CCNA_00324at 338.378 kb on + strandat 338.382 kb on + strandat 338.382 kb on + strandat 338.382 kb on + strandat 338.385 kb on - strandat 338.400 kb on - strandat 338.400 kb on - strandat 338.431 kb on - strandat 338.447 kb on + strandat 338.452 kb on + strandat 338.496 kb on - strandat 338.496 kb on - strandat 338.512 kb on - strandat 338.559 kb on - strandat 338.566 kb on - strandat 338.594 kb on - strandat 338.618 kb on + strandat 338.618 kb on + strandat 338.626 kb on - strandat 338.626 kb on - strandat 338.850 kb on + strand, within CCNA_00326at 338.850 kb on + strand, within CCNA_00326at 338.877 kb on + strand, within CCNA_00326at 338.884 kb on - strand, within CCNA_00326at 338.941 kb on + strand, within CCNA_00326at 338.949 kb on - strand, within CCNA_00326at 338.949 kb on - strand, within CCNA_00326at 338.976 kb on + strand, within CCNA_00326at 339.042 kb on + strand, within CCNA_00326at 339.050 kb on - strand, within CCNA_00326at 339.050 kb on - strand, within CCNA_00326at 339.062 kb on + strand, within CCNA_00326at 339.072 kb on - strand, within CCNA_00326at 339.099 kb on + strand, within CCNA_00326at 339.107 kb on - strand, within CCNA_00326at 339.107 kb on - strand, within CCNA_00326at 339.138 kb on + strand, within CCNA_00326at 339.138 kb on + strand, within CCNA_00326at 339.138 kb on + strand, within CCNA_00326at 339.146 kb on - strand, within CCNA_00326at 339.146 kb on - strand, within CCNA_00326at 339.146 kb on - strand, within CCNA_00326at 339.165 kb on - strand, within CCNA_00326at 339.168 kb on + strand, within CCNA_00326at 339.168 kb on + strand, within CCNA_00326at 339.191 kb on + strand, within CCNA_00326at 339.191 kb on + strand, within CCNA_00326at 339.197 kb on + strand, within CCNA_00326at 339.200 kb on - strand, within CCNA_00326at 339.229 kb on + strand, within CCNA_00326at 339.281 kb on + strand, within CCNA_00326at 339.308 kb on + strand, within CCNA_00326at 339.308 kb on + strand, within CCNA_00326at 339.309 kb on + strand, within CCNA_00326at 339.342 kb on - strand, within CCNA_00326at 339.381 kb on + strand, within CCNA_00326at 339.398 kb on + strand, within CCNA_00326at 339.450 kb on + strand, within CCNA_00326at 339.468 kb on + strand, within CCNA_00326at 339.468 kb on + strand, within CCNA_00326at 339.468 kb on + strand, within CCNA_00326at 339.468 kb on + strand, within CCNA_00326at 339.476 kb on - strand, within CCNA_00326at 339.480 kb on + strand, within CCNA_00326at 339.480 kb on + strand, within CCNA_00326at 339.481 kb on - strand, within CCNA_00326at 339.485 kb on + strand, within CCNA_00326at 339.485 kb on + strand, within CCNA_00326at 339.485 kb on + strand, within CCNA_00326at 339.493 kb on - strand, within CCNA_00326at 339.519 kb on - strand, within CCNA_00326at 339.524 kb on + strand, within CCNA_00326at 339.524 kb on + strand, within CCNA_00326at 339.532 kb on - strand, within CCNA_00326at 339.539 kb on - strand, within CCNA_00326at 339.548 kb on + strand, within CCNA_00326at 339.561 kb on - strand, within CCNA_00326at 339.595 kb on - strandat 339.595 kb on - strandat 339.618 kb on - strandat 339.660 kb on + strandat 339.663 kb on - strandat 339.668 kb on - strandat 339.689 kb on - strandat 339.689 kb on - strandat 339.699 kb on - strandat 339.756 kb on - strandat 339.777 kb on - strandat 339.777 kb on - strandat 339.791 kb on - strandat 339.806 kb on + strandat 339.828 kb on + strandat 339.834 kb on - strandat 339.837 kb on + strandat 339.845 kb on - strandat 339.915 kb on - strand, within CCNA_00327at 339.920 kb on - strand, within CCNA_00327at 339.941 kb on - strand, within CCNA_00327at 339.954 kb on + strand, within CCNA_00327at 339.961 kb on - strand, within CCNA_00327at 339.974 kb on + strand, within CCNA_00327at 339.974 kb on + strand, within CCNA_00327at 339.974 kb on + strand, within CCNA_00327at 339.974 kb on + strand, within CCNA_00327at 339.978 kb on + strand, within CCNA_00327at 339.982 kb on - strand, within CCNA_00327at 339.982 kb on - strand, within CCNA_00327at 339.988 kb on + strand, within CCNA_00327at 339.988 kb on + strand, within CCNA_00327at 339.993 kb on + strand, within CCNA_00327at 340.008 kb on + strand, within CCNA_00327at 340.010 kb on + strand, within CCNA_00327at 340.016 kb on - strand, within CCNA_00327at 340.016 kb on - strand, within CCNA_00327at 340.037 kb on + strand, within CCNA_00327at 340.045 kb on - strand, within CCNA_00327at 340.045 kb on - strand, within CCNA_00327at 340.045 kb on - strand, within CCNA_00327at 340.055 kb on - strand, within CCNA_00327at 340.055 kb on - strand, within CCNA_00327at 340.079 kb on - strand, within CCNA_00327at 340.134 kb on - strand, within CCNA_00327at 340.139 kb on - strand, within CCNA_00327at 340.150 kb on + strand, within CCNA_00327at 340.168 kb on + strand, within CCNA_00327at 340.176 kb on - strand, within CCNA_00327at 340.194 kb on - strand, within CCNA_00327at 340.196 kb on - strand, within CCNA_00327at 340.198 kb on + strand, within CCNA_00327at 340.200 kb on + strand, within CCNA_00327at 340.206 kb on - strand, within CCNA_00327at 340.208 kb on - strand, within CCNA_00327at 340.210 kb on + strand, within CCNA_00327at 340.213 kb on - strand, within CCNA_00327at 340.225 kb on - strand, within CCNA_00327at 340.251 kb on - strand, within CCNA_00327at 340.251 kb on - strand, within CCNA_00327at 340.251 kb on - strand, within CCNA_00327at 340.258 kb on - strand, within CCNA_00327at 340.269 kb on + strand, within CCNA_00327at 340.274 kb on - strand, within CCNA_00327at 340.291 kb on + strand, within CCNA_00327at 340.353 kb on - strand, within CCNA_00327at 340.362 kb on - strand, within CCNA_00327at 340.374 kb on + strand, within CCNA_00327at 340.396 kb on + strand, within CCNA_00327at 340.398 kb on + strand, within CCNA_00327at 340.398 kb on + strand, within CCNA_00327at 340.404 kb on - strand, within CCNA_00327at 340.423 kb on + strand, within CCNA_00327at 340.423 kb on + strand, within CCNA_00327at 340.441 kb on - strandat 340.475 kb on - strandat 340.499 kb on + strandat 340.507 kb on - strandat 340.513 kb on + strandat 340.516 kb on - strandat 340.521 kb on - strandat 340.521 kb on - strandat 340.545 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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337,671 - +0.1
337,693 + -0.5
337,706 + -0.0
337,823 - +1.2
337,844 + -0.5
337,850 - +0.6
337,850 - +0.1
337,891 - -1.5
337,920 + -0.3
337,960 + -1.5
337,970 + +0.0
337,999 + CCNA_00324 0.15 -1.0
338,016 + CCNA_00324 0.18 +0.6
338,124 + CCNA_00324 0.42 -0.1
338,183 - CCNA_00324 0.55 -0.1
338,241 - CCNA_00324 0.67 -0.4
338,252 - CCNA_00324 0.70 -0.5
338,378 + -0.5
338,382 + +0.4
338,382 + -2.3
338,382 + -1.2
338,385 - -0.4
338,400 - -0.1
338,400 - +1.2
338,431 - +0.1
338,447 + -1.1
338,452 + -1.6
338,496 - +0.3
338,496 - +0.6
338,512 - -0.1
338,559 - +0.1
338,566 - -0.5
338,594 - +0.4
338,618 + +0.8
338,618 + +0.1
338,626 - +0.1
338,626 - -0.2
338,850 + CCNA_00326 0.21 -1.4
338,850 + CCNA_00326 0.21 -0.5
338,877 + CCNA_00326 0.24 +0.7
338,884 - CCNA_00326 0.24 +1.1
338,941 + CCNA_00326 0.30 -1.9
338,949 - CCNA_00326 0.31 -0.3
338,949 - CCNA_00326 0.31 -1.0
338,976 + CCNA_00326 0.33 +0.1
339,042 + CCNA_00326 0.40 +0.6
339,050 - CCNA_00326 0.40 +0.1
339,050 - CCNA_00326 0.40 +0.5
339,062 + CCNA_00326 0.41 +1.3
339,072 - CCNA_00326 0.42 +0.5
339,099 + CCNA_00326 0.45 -0.2
339,107 - CCNA_00326 0.46 -1.0
339,107 - CCNA_00326 0.46 +0.5
339,138 + CCNA_00326 0.49 -1.1
339,138 + CCNA_00326 0.49 -0.3
339,138 + CCNA_00326 0.49 +0.1
339,146 - CCNA_00326 0.50 -0.5
339,146 - CCNA_00326 0.50 +0.2
339,146 - CCNA_00326 0.50 -0.4
339,165 - CCNA_00326 0.51 -0.8
339,168 + CCNA_00326 0.52 -0.6
339,168 + CCNA_00326 0.52 +0.6
339,191 + CCNA_00326 0.54 +0.1
339,191 + CCNA_00326 0.54 +0.0
339,197 + CCNA_00326 0.55 +1.1
339,200 - CCNA_00326 0.55 -0.8
339,229 + CCNA_00326 0.58 +0.0
339,281 + CCNA_00326 0.63 +0.1
339,308 + CCNA_00326 0.65 -0.6
339,308 + CCNA_00326 0.65 +0.1
339,309 + CCNA_00326 0.65 -0.0
339,342 - CCNA_00326 0.69 -1.3
339,381 + CCNA_00326 0.72 -0.3
339,398 + CCNA_00326 0.74 -0.4
339,450 + CCNA_00326 0.79 +0.3
339,468 + CCNA_00326 0.81 +0.2
339,468 + CCNA_00326 0.81 -0.3
339,468 + CCNA_00326 0.81 +0.2
339,468 + CCNA_00326 0.81 -0.2
339,476 - CCNA_00326 0.82 -0.7
339,480 + CCNA_00326 0.82 -0.1
339,480 + CCNA_00326 0.82 -0.5
339,481 - CCNA_00326 0.82 +0.1
339,485 + CCNA_00326 0.82 +0.1
339,485 + CCNA_00326 0.82 +0.3
339,485 + CCNA_00326 0.82 -0.2
339,493 - CCNA_00326 0.83 -0.5
339,519 - CCNA_00326 0.86 +0.1
339,524 + CCNA_00326 0.86 +0.4
339,524 + CCNA_00326 0.86 -0.2
339,532 - CCNA_00326 0.87 -1.1
339,539 - CCNA_00326 0.88 -0.1
339,548 + CCNA_00326 0.89 -0.0
339,561 - CCNA_00326 0.90 -0.4
339,595 - +0.6
339,595 - +0.3
339,618 - -0.0
339,660 + -0.5
339,663 - -0.1
339,668 - +0.1
339,689 - +0.1
339,689 - +0.7
339,699 - +0.1
339,756 - +0.8
339,777 - -0.3
339,777 - +0.2
339,791 - -0.8
339,806 + +0.5
339,828 + +0.9
339,834 - -0.1
339,837 + +0.4
339,845 - +0.3
339,915 - CCNA_00327 0.13 -1.0
339,920 - CCNA_00327 0.14 -0.0
339,941 - CCNA_00327 0.17 -0.5
339,954 + CCNA_00327 0.19 +0.7
339,961 - CCNA_00327 0.20 +0.5
339,974 + CCNA_00327 0.22 -0.6
339,974 + CCNA_00327 0.22 +0.6
339,974 + CCNA_00327 0.22 -0.5
339,974 + CCNA_00327 0.22 -2.0
339,978 + CCNA_00327 0.23 +0.7
339,982 - CCNA_00327 0.23 -0.6
339,982 - CCNA_00327 0.23 -0.0
339,988 + CCNA_00327 0.24 -0.5
339,988 + CCNA_00327 0.24 -0.9
339,993 + CCNA_00327 0.25 -1.2
340,008 + CCNA_00327 0.27 -0.6
340,010 + CCNA_00327 0.27 -0.5
340,016 - CCNA_00327 0.28 +0.0
340,016 - CCNA_00327 0.28 -1.2
340,037 + CCNA_00327 0.32 -0.1
340,045 - CCNA_00327 0.33 +0.8
340,045 - CCNA_00327 0.33 -0.0
340,045 - CCNA_00327 0.33 -0.4
340,055 - CCNA_00327 0.34 -0.2
340,055 - CCNA_00327 0.34 +0.2
340,079 - CCNA_00327 0.38 -0.4
340,134 - CCNA_00327 0.46 -0.3
340,139 - CCNA_00327 0.47 +0.9
340,150 + CCNA_00327 0.49 -1.2
340,168 + CCNA_00327 0.51 +0.5
340,176 - CCNA_00327 0.52 +0.3
340,194 - CCNA_00327 0.55 +0.3
340,196 - CCNA_00327 0.56 +1.4
340,198 + CCNA_00327 0.56 -0.2
340,200 + CCNA_00327 0.56 +0.0
340,206 - CCNA_00327 0.57 +0.2
340,208 - CCNA_00327 0.57 +0.2
340,210 + CCNA_00327 0.58 -1.9
340,213 - CCNA_00327 0.58 +0.1
340,225 - CCNA_00327 0.60 -0.2
340,251 - CCNA_00327 0.64 +1.0
340,251 - CCNA_00327 0.64 +0.0
340,251 - CCNA_00327 0.64 +0.2
340,258 - CCNA_00327 0.65 +1.2
340,269 + CCNA_00327 0.67 +0.0
340,274 - CCNA_00327 0.67 +0.3
340,291 + CCNA_00327 0.70 -1.5
340,353 - CCNA_00327 0.79 +1.3
340,362 - CCNA_00327 0.81 +0.1
340,374 + CCNA_00327 0.82 -0.3
340,396 + CCNA_00327 0.86 +0.7
340,398 + CCNA_00327 0.86 -0.4
340,398 + CCNA_00327 0.86 +0.5
340,404 - CCNA_00327 0.87 +0.1
340,423 + CCNA_00327 0.90 -0.4
340,423 + CCNA_00327 0.90 -1.4
340,441 - +0.4
340,475 - +0.2
340,499 + +0.9
340,507 - -1.1
340,513 + +0.6
340,516 - -0.0
340,521 - -0.1
340,521 - -0.3
340,545 + +0.2

Or see this region's nucleotide sequence