Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00304

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00303 and CCNA_00304 overlap by 4 nucleotidesCCNA_00304 and CCNA_00305 overlap by 31 nucleotides CCNA_00303: CCNA_00303 - tetraacyldisaccharide-1-P 4'-kinase, at 317,027 to 318,034 _00303 CCNA_00304: CCNA_00304 - 3-deoxy-D-manno-octulosonic-acid transferase, at 318,031 to 319,308 _00304 CCNA_00305: CCNA_00305 - cobalt-zinc-cadmium resistance protein czcD, at 319,278 to 320,303 _00305 Position (kb) 318 319 320Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 317.040 kb on + strandat 318.029 kb on + strandat 318.195 kb on - strand, within CCNA_00304at 318.273 kb on - strand, within CCNA_00304at 318.410 kb on - strand, within CCNA_00304at 318.587 kb on + strand, within CCNA_00304at 318.595 kb on - strand, within CCNA_00304at 318.726 kb on + strand, within CCNA_00304at 319.001 kb on - strand, within CCNA_00304at 319.034 kb on + strand, within CCNA_00304at 319.047 kb on - strand, within CCNA_00304at 319.099 kb on + strand, within CCNA_00304at 319.150 kb on + strand, within CCNA_00304at 319.150 kb on + strand, within CCNA_00304at 319.362 kb on - strandat 319.362 kb on - strandat 319.376 kb on - strandat 319.390 kb on + strand, within CCNA_00305at 319.411 kb on + strand, within CCNA_00305at 319.419 kb on - strand, within CCNA_00305at 319.465 kb on + strand, within CCNA_00305at 319.478 kb on - strand, within CCNA_00305at 319.487 kb on - strand, within CCNA_00305at 319.487 kb on - strand, within CCNA_00305at 319.487 kb on - strand, within CCNA_00305at 319.558 kb on - strand, within CCNA_00305at 319.597 kb on - strand, within CCNA_00305at 319.640 kb on + strand, within CCNA_00305at 319.640 kb on + strand, within CCNA_00305at 319.642 kb on - strand, within CCNA_00305at 319.650 kb on + strand, within CCNA_00305at 319.671 kb on + strand, within CCNA_00305at 319.679 kb on - strand, within CCNA_00305at 319.743 kb on - strand, within CCNA_00305at 319.750 kb on - strand, within CCNA_00305at 319.753 kb on + strand, within CCNA_00305at 319.761 kb on - strand, within CCNA_00305at 319.762 kb on - strand, within CCNA_00305at 319.773 kb on + strand, within CCNA_00305at 319.773 kb on + strand, within CCNA_00305at 319.781 kb on - strand, within CCNA_00305at 319.791 kb on + strand, within CCNA_00305at 319.920 kb on - strand, within CCNA_00305at 319.933 kb on + strand, within CCNA_00305at 319.949 kb on + strand, within CCNA_00305at 319.949 kb on + strand, within CCNA_00305at 319.949 kb on + strand, within CCNA_00305at 319.949 kb on + strand, within CCNA_00305at 319.949 kb on + strand, within CCNA_00305at 319.949 kb on + strand, within CCNA_00305at 319.949 kb on + strand, within CCNA_00305at 319.949 kb on + strand, within CCNA_00305at 319.957 kb on - strand, within CCNA_00305at 319.957 kb on - strand, within CCNA_00305at 319.957 kb on - strand, within CCNA_00305at 319.983 kb on + strand, within CCNA_00305at 319.991 kb on - strand, within CCNA_00305at 319.993 kb on + strand, within CCNA_00305at 320.034 kb on + strand, within CCNA_00305at 320.034 kb on + strand, within CCNA_00305at 320.042 kb on - strand, within CCNA_00305at 320.067 kb on - strand, within CCNA_00305at 320.112 kb on + strand, within CCNA_00305at 320.112 kb on + strand, within CCNA_00305at 320.120 kb on - strand, within CCNA_00305at 320.120 kb on - strand, within CCNA_00305at 320.156 kb on - strand, within CCNA_00305at 320.193 kb on - strand, within CCNA_00305at 320.199 kb on - strand, within CCNA_00305at 320.209 kb on - strandat 320.246 kb on - strandat 320.246 kb on - strandat 320.267 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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317,040 + +0.3
318,029 + +0.9
318,195 - CCNA_00304 0.13 -3.7
318,273 - CCNA_00304 0.19 -0.3
318,410 - CCNA_00304 0.30 -0.9
318,587 + CCNA_00304 0.44 -2.2
318,595 - CCNA_00304 0.44 -0.2
318,726 + CCNA_00304 0.54 -1.3
319,001 - CCNA_00304 0.76 +0.3
319,034 + CCNA_00304 0.78 -0.3
319,047 - CCNA_00304 0.79 +0.7
319,099 + CCNA_00304 0.84 -0.3
319,150 + CCNA_00304 0.88 +0.1
319,150 + CCNA_00304 0.88 +0.3
319,362 - -0.3
319,362 - -0.3
319,376 - -0.0
319,390 + CCNA_00305 0.11 -2.2
319,411 + CCNA_00305 0.13 +0.5
319,419 - CCNA_00305 0.14 -0.6
319,465 + CCNA_00305 0.18 -2.5
319,478 - CCNA_00305 0.19 +0.1
319,487 - CCNA_00305 0.20 +0.0
319,487 - CCNA_00305 0.20 -1.2
319,487 - CCNA_00305 0.20 -0.3
319,558 - CCNA_00305 0.27 +0.4
319,597 - CCNA_00305 0.31 +0.3
319,640 + CCNA_00305 0.35 +0.5
319,640 + CCNA_00305 0.35 -1.4
319,642 - CCNA_00305 0.35 -2.5
319,650 + CCNA_00305 0.36 -1.4
319,671 + CCNA_00305 0.38 -0.9
319,679 - CCNA_00305 0.39 -0.3
319,743 - CCNA_00305 0.45 +1.3
319,750 - CCNA_00305 0.46 +0.1
319,753 + CCNA_00305 0.46 +1.5
319,761 - CCNA_00305 0.47 -0.8
319,762 - CCNA_00305 0.47 -0.5
319,773 + CCNA_00305 0.48 -0.2
319,773 + CCNA_00305 0.48 -0.1
319,781 - CCNA_00305 0.49 +0.3
319,791 + CCNA_00305 0.50 -2.7
319,920 - CCNA_00305 0.63 -0.0
319,933 + CCNA_00305 0.64 +0.3
319,949 + CCNA_00305 0.65 +0.5
319,949 + CCNA_00305 0.65 -0.2
319,949 + CCNA_00305 0.65 +0.3
319,949 + CCNA_00305 0.65 +0.4
319,949 + CCNA_00305 0.65 -1.4
319,949 + CCNA_00305 0.65 +0.9
319,949 + CCNA_00305 0.65 +0.3
319,949 + CCNA_00305 0.65 +0.4
319,957 - CCNA_00305 0.66 +0.4
319,957 - CCNA_00305 0.66 -0.9
319,957 - CCNA_00305 0.66 -1.0
319,983 + CCNA_00305 0.69 -0.6
319,991 - CCNA_00305 0.69 +0.5
319,993 + CCNA_00305 0.70 -0.2
320,034 + CCNA_00305 0.74 -0.7
320,034 + CCNA_00305 0.74 +2.3
320,042 - CCNA_00305 0.74 -0.1
320,067 - CCNA_00305 0.77 +0.4
320,112 + CCNA_00305 0.81 -0.8
320,112 + CCNA_00305 0.81 -1.0
320,120 - CCNA_00305 0.82 -0.0
320,120 - CCNA_00305 0.82 +0.5
320,156 - CCNA_00305 0.86 -1.1
320,193 - CCNA_00305 0.89 -0.3
320,199 - CCNA_00305 0.90 +0.5
320,209 - +0.2
320,246 - +1.2
320,246 - +0.7
320,267 - +0.3

Or see this region's nucleotide sequence